Wall clock time and date at job start Tue Mar 31 2020 05:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30173 * 125.08805 * 2 1 4 4 C 1.34886 * 109.73561 * 179.97438 * 3 2 1 5 5 C 1.46292 * 126.49825 * 179.97438 * 4 3 2 6 6 O 1.21771 * 119.99807 * 180.02562 * 5 4 3 7 7 N 1.34770 * 119.99774 * 0.02562 * 5 4 3 8 8 C 1.46506 * 119.99803 * 180.02562 * 7 5 4 9 9 H 1.08997 * 110.91739 * 37.44409 * 8 7 5 10 10 C 1.54914 * 111.00108 * 273.54334 * 8 7 5 11 11 N 1.47424 * 104.83297 * 204.91524 * 10 8 7 12 12 C 1.36929 * 125.64830 * 204.09112 * 11 10 8 13 13 H 1.08004 * 120.00341 * 0.27955 * 12 11 10 14 14 C 1.38815 * 120.00031 * 179.97438 * 12 11 10 15 15 N 1.31617 * 119.99916 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99958 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47228 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46793 * 120.00365 * 16 14 12 19 19 H 1.48500 * 109.47000 * 240.00457 * 16 14 12 20 20 C 1.47020 * 108.70055 * 24.35724 * 11 10 8 21 21 C 1.54336 * 107.26729 * 358.58390 * 20 11 10 22 22 H 1.09005 * 110.66569 * 96.52538 * 21 20 11 23 23 O 1.42898 * 110.84754 * 219.67265 * 21 20 11 24 24 C 1.40146 * 107.00540 * 0.26287 * 4 3 2 25 25 C 1.40182 * 133.58054 * 180.48820 * 24 4 3 26 26 C 1.36332 * 119.20137 * 179.57845 * 25 24 4 27 27 C 1.40398 * 119.56011 * 359.70981 * 26 25 24 28 28 C 1.35028 * 120.43814 * 0.02562 * 27 26 25 29 29 N 1.36244 * 125.08732 * 179.97438 * 2 1 3 30 30 H 1.08992 * 109.47288 * 90.02632 * 1 2 3 31 31 H 1.09008 * 109.46898 * 210.02738 * 1 2 3 32 32 H 1.08999 * 109.47084 * 330.02183 * 1 2 3 33 33 H 0.96999 * 120.00449 * 359.97438 * 7 5 4 34 34 H 1.09000 * 110.36358 * 86.07730 * 10 8 7 35 35 H 1.09001 * 110.46151 * 323.80527 * 10 8 7 36 36 H 0.97000 * 120.00284 * 179.97438 * 15 14 12 37 37 H 1.08996 * 109.88473 * 118.13169 * 20 11 10 38 38 H 1.09004 * 109.88289 * 239.29419 * 20 11 10 39 39 H 0.96698 * 114.00088 * 293.68783 * 23 21 20 40 40 H 1.08003 * 120.39910 * 359.28431 * 25 24 4 41 41 H 1.08002 * 120.22374 * 179.73123 * 26 25 24 42 42 H 1.07992 * 119.77980 * 179.97438 * 27 26 25 43 43 H 1.08001 * 119.70173 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2554 1.0652 0.0000 4 6 3.5561 0.7080 0.0006 5 6 4.7065 1.6117 0.0002 6 8 5.8367 1.1585 0.0004 7 7 4.5154 2.9458 -0.0002 8 6 5.6676 3.8508 -0.0011 9 1 6.4726 3.4552 -0.6204 10 6 6.1600 4.1240 1.4420 11 7 6.8409 5.4295 1.3676 12 6 7.8110 5.8736 2.2258 13 1 8.1406 5.2453 3.0401 14 6 8.3755 7.1290 2.0455 15 7 7.9779 7.8925 1.0499 16 14 9.6996 7.7345 3.2158 17 1 9.9664 6.6949 4.2420 18 1 10.9448 8.0094 2.4548 19 1 9.2404 8.9805 3.8806 20 6 6.3011 6.1781 0.2232 21 6 5.2570 5.2734 -0.4647 22 1 4.2515 5.5159 -0.1206 23 8 5.3439 5.3866 -1.8865 24 6 3.5965 -0.6928 -0.0052 25 6 4.6394 -1.6295 0.0012 26 6 4.3390 -2.9594 0.0010 27 6 2.9952 -3.3659 0.0007 28 6 2.0033 -2.4497 0.0000 29 7 2.2902 -1.1148 0.0005 30 1 -0.3633 -0.0005 -1.0276 31 1 -0.3633 -0.8898 0.5143 32 1 -0.3633 0.8902 0.5135 33 1 3.6151 3.3069 -0.0007 34 1 6.8588 3.3492 1.7574 35 1 5.3157 4.1751 2.1295 36 1 8.3720 8.7698 0.9240 37 1 5.8274 7.0961 0.5708 38 1 7.1027 6.4143 -0.4767 39 1 5.0975 6.2572 -2.2276 40 1 5.6685 -1.3017 0.0014 41 1 5.1295 -3.6953 0.0015 42 1 2.7532 -4.4184 0.0002 43 1 0.9737 -2.7757 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077383662.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:00 Heat of formation + Delta-G solvation = 6.547612 kcal Electronic energy + Delta-G solvation = -27718.491571 eV Core-core repulsion = 23764.663382 eV Total energy + Delta-G solvation = -3953.828189 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.93324 -40.88863 -39.33412 -38.49282 -36.71702 -35.55650 -34.64344 -33.60964 -32.55823 -31.13041 -30.24628 -29.00100 -27.78328 -26.39850 -24.92485 -24.54365 -22.46055 -22.17369 -21.94111 -21.39642 -19.29663 -18.91273 -18.26460 -17.89899 -17.35017 -17.31566 -17.21751 -16.54771 -16.40714 -15.97338 -15.72067 -15.58649 -15.38533 -14.72013 -14.50248 -14.46471 -14.27445 -14.00731 -13.78520 -13.43989 -13.22106 -13.18980 -13.08237 -12.78975 -12.75639 -12.66792 -12.61075 -12.06783 -11.90669 -11.71334 -11.68097 -11.57698 -11.27525 -10.91243 -10.79436 -10.40326 -10.22167 -9.00022 -8.52323 -7.89979 -5.27928 -0.39447 0.06116 1.18772 1.40090 1.44850 1.46749 1.57349 2.08390 2.24381 2.46733 2.54382 3.08995 3.17884 3.30654 3.41383 3.50772 3.67862 3.74524 3.82877 3.91999 4.01091 4.07823 4.16296 4.18816 4.39904 4.52814 4.55483 4.71902 4.74981 4.78285 4.83194 4.94866 5.01270 5.12949 5.23492 5.28924 5.34109 5.40235 5.42667 5.53089 5.63155 6.10397 6.11433 6.38646 6.70680 6.84124 7.02656 7.18353 7.66165 8.29951 9.20292 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.020342 B = 0.002657 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.125683 B =10537.068088 C =11205.677287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.168 3.832 3 N -0.441 5.441 4 C -0.115 4.115 5 C 0.601 3.399 6 O -0.582 6.582 7 N -0.692 5.692 8 C 0.156 3.844 9 H 0.073 0.927 10 C 0.134 3.866 11 N -0.621 5.621 12 C -0.249 4.249 13 H 0.081 0.919 14 C -0.062 4.062 15 N -0.949 5.949 16 Si 0.984 3.016 17 H -0.268 1.268 18 H -0.290 1.290 19 H -0.286 1.286 20 C 0.164 3.836 21 C 0.092 3.908 22 H 0.089 0.911 23 O -0.568 6.568 24 C 0.076 3.924 25 C -0.123 4.123 26 C -0.078 4.078 27 C -0.132 4.132 28 C 0.054 3.946 29 N -0.364 5.364 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.414 0.586 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.250 0.750 37 H 0.028 0.972 38 H 0.025 0.975 39 H 0.397 0.603 40 H 0.135 0.865 41 H 0.171 0.829 42 H 0.200 0.800 43 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.676 -24.913 -4.083 32.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.090 4.090 3 N -0.157 5.157 4 C -0.247 4.247 5 C 0.391 3.609 6 O -0.463 6.463 7 N -0.342 5.342 8 C 0.049 3.951 9 H 0.091 0.909 10 C 0.007 3.993 11 N -0.349 5.349 12 C -0.377 4.377 13 H 0.099 0.901 14 C -0.255 4.255 15 N -0.597 5.597 16 Si 0.812 3.188 17 H -0.192 1.192 18 H -0.217 1.217 19 H -0.212 1.212 20 C 0.039 3.961 21 C 0.031 3.969 22 H 0.107 0.893 23 O -0.375 6.375 24 C -0.039 4.039 25 C -0.143 4.143 26 C -0.100 4.100 27 C -0.151 4.151 28 C -0.066 4.066 29 N -0.035 5.035 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.113 0.887 33 H 0.251 0.749 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.043 0.957 39 H 0.247 0.753 40 H 0.153 0.847 41 H 0.189 0.811 42 H 0.217 0.783 43 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -20.002 -24.759 -4.008 32.080 hybrid contribution 1.097 1.058 0.441 1.586 sum -18.905 -23.701 -3.567 30.527 Atomic orbital electron populations 1.20436 0.80184 1.05962 1.05220 1.24265 0.97315 0.78267 1.09203 1.69885 1.01065 1.29532 1.15223 1.20088 0.91357 0.90405 1.22813 1.16882 0.86943 0.81870 0.75230 1.90768 1.24855 1.77284 1.53378 1.45457 1.09715 1.04900 1.74166 1.21759 0.88494 0.88500 0.96323 0.90853 1.21876 0.95374 0.87692 0.94361 1.44530 1.43955 1.14228 1.32168 1.19492 1.12194 0.99554 1.06496 0.90131 1.25699 1.02401 0.96998 1.00429 1.70138 1.46153 1.10703 1.32703 0.84929 0.78037 0.77924 0.77912 1.19234 1.21709 1.21246 1.21609 0.93487 0.92465 0.88574 1.23124 0.98647 0.93637 0.81470 0.89311 1.86434 1.92061 1.39371 1.19673 1.19407 0.85878 0.93843 1.04741 1.20805 0.98112 0.92914 1.02438 1.21758 0.98955 0.94585 0.94723 1.21534 0.90785 1.02275 1.00539 1.22711 1.04351 0.78400 1.01177 1.43103 1.06510 1.08076 1.45772 0.88409 0.87461 0.88684 0.74920 0.94647 0.94718 0.94034 0.95353 0.95656 0.75302 0.84671 0.81146 0.78263 0.76621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.52 10.32 71.24 0.74 0.21 16 2 C 0.17 3.44 7.94 137.84 1.09 4.53 16 3 N -0.44 -12.87 10.90 -175.24 -1.91 -14.78 16 4 C -0.12 -3.91 7.05 41.23 0.29 -3.62 16 5 C 0.60 24.04 7.77 86.34 0.67 24.72 16 6 O -0.58 -26.61 15.50 -4.58 -0.07 -26.68 16 7 N -0.69 -26.28 5.23 -440.24 -2.30 -28.58 16 8 C 0.16 6.77 3.04 46.38 0.14 6.92 16 9 H 0.07 3.64 7.73 -2.39 -0.02 3.62 16 10 C 0.13 6.46 6.93 86.86 0.60 7.07 16 11 N -0.62 -34.68 3.39 -691.96 -2.35 -37.03 16 12 C -0.25 -14.85 10.28 84.04 0.86 -13.99 16 13 H 0.08 4.66 7.83 -2.91 -0.02 4.64 16 14 C -0.06 -3.66 5.49 84.86 0.47 -3.20 16 15 N -0.95 -58.05 10.31 21.65 0.22 -57.83 16 16 Si 0.98 47.37 29.55 68.60 2.03 49.40 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 18 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 19 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 20 C 0.16 8.50 5.16 86.73 0.45 8.95 16 21 C 0.09 3.72 3.94 31.78 0.13 3.85 16 22 H 0.09 3.12 7.99 -2.38 -0.02 3.10 16 23 O -0.57 -21.23 13.39 -148.98 -2.00 -23.23 16 24 C 0.08 2.12 6.72 39.23 0.26 2.38 16 25 C -0.12 -2.95 9.73 22.30 0.22 -2.73 16 26 C -0.08 -1.02 10.08 22.35 0.23 -0.80 16 27 C -0.13 -0.87 9.98 22.06 0.22 -0.65 16 28 C 0.05 0.47 10.77 83.22 0.90 1.36 16 29 N -0.36 -7.00 2.94 -337.19 -0.99 -7.99 16 30 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.11 0.21 7.99 -2.38 -0.02 0.19 16 32 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.41 13.88 8.21 -92.71 -0.76 13.12 16 34 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 37 H 0.03 1.56 7.52 -2.39 -0.02 1.54 16 38 H 0.03 1.47 7.28 -2.39 -0.02 1.46 16 39 H 0.40 11.07 9.12 -74.06 -0.68 10.39 16 40 H 0.14 3.83 7.17 -2.91 -0.02 3.81 16 41 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 42 H 0.20 -0.54 8.06 -2.91 -0.02 -0.56 16 43 H 0.22 -0.36 7.94 -2.91 -0.02 -0.39 16 Total: -1.00 -87.92 363.51 -0.48 -88.40 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: -0.37 Total: 23.31 kcal Atomic # 6 Polarization: 27.74 SS G_CDS: 7.26 Total: 35.00 kcal Atomic # 7 Polarization: -138.88 SS G_CDS: -7.33 Total: -146.20 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: -2.07 Total: -49.91 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -87.92 -0.48 -88.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077383662.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.945 kcal (2) G-P(sol) polarization free energy of solvation -87.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds