Wall clock time and date at job start Tue Mar 31 2020 04:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39743 * 119.42476 * 2 1 4 4 C 1.38944 * 119.29210 * 180.02562 * 3 2 1 5 5 C 1.47220 * 120.86020 * 180.02562 * 4 3 2 6 6 O 1.21640 * 120.00085 * 179.97438 * 5 4 3 7 7 N 1.34778 * 119.99998 * 0.02562 * 5 4 3 8 8 C 1.46502 * 119.99724 * 180.02562 * 7 5 4 9 9 H 1.08997 * 110.92304 * 31.09424 * 8 7 5 10 10 C 1.54909 * 111.00219 * 267.19171 * 8 7 5 11 11 N 1.47426 * 104.83381 * 204.91950 * 10 8 7 12 12 C 1.36939 * 125.64917 * 204.16150 * 11 10 8 13 13 H 1.08001 * 119.99881 * 359.97438 * 12 11 10 14 14 C 1.38813 * 119.99940 * 179.97438 * 12 11 10 15 15 N 1.31615 * 120.00066 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00060 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.46743 * 59.99931 * 16 14 12 18 18 H 1.48495 * 109.47245 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46854 * 300.00070 * 16 14 12 20 20 C 1.47018 * 108.70104 * 24.12870 * 11 10 8 21 21 C 1.54322 * 107.27336 * 358.94171 * 20 11 10 22 22 H 1.09002 * 110.71963 * 96.17078 * 21 20 11 23 23 O 1.42901 * 110.71944 * 219.26540 * 21 20 11 24 24 C 1.46557 * 118.27744 * 0.27479 * 4 3 2 25 25 N 1.31978 * 132.71668 * 180.51380 * 24 4 3 26 26 C 1.33742 * 109.17274 * 179.48332 * 25 24 4 27 27 C 1.34957 * 108.60291 * 359.69755 * 26 25 24 28 28 N 1.37006 * 107.15240 * 359.97438 * 27 26 25 29 29 C 1.35107 * 119.43063 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47746 * 89.99571 * 1 2 3 31 31 H 1.09002 * 109.46826 * 209.99469 * 1 2 3 32 32 H 1.08994 * 109.47216 * 329.99022 * 1 2 3 33 33 H 1.07998 * 120.35663 * 0.02562 * 3 2 1 34 34 H 0.96998 * 120.00151 * 359.97438 * 7 5 4 35 35 H 1.08998 * 110.36917 * 86.07661 * 10 8 7 36 36 H 1.09009 * 110.46209 * 323.80298 * 10 8 7 37 37 H 0.96994 * 120.00360 * 180.02562 * 15 14 12 38 38 H 1.08998 * 109.88222 * 239.52595 * 20 11 10 39 39 H 1.09005 * 110.01447 * 118.43174 * 20 11 10 40 40 H 0.96689 * 114.00373 * 296.15847 * 23 21 20 41 41 H 1.08004 * 125.70255 * 179.67473 * 26 25 24 42 42 H 1.07999 * 126.42685 * 180.02562 * 27 26 25 43 43 H 1.08004 * 119.14158 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.2172 0.0000 4 6 3.5829 1.2139 -0.0005 5 6 4.3410 2.4760 0.0000 6 8 5.5572 2.4549 0.0000 7 7 3.6875 3.6547 0.0016 8 6 4.4419 4.9105 0.0015 9 1 5.3891 4.7956 -0.5254 10 6 4.6688 5.4219 1.4461 11 7 4.8502 6.8783 1.3067 12 6 5.5178 7.6873 2.1870 13 1 5.9662 7.2656 3.0745 14 6 5.6183 9.0493 1.9388 15 7 5.0715 9.5633 0.8576 16 14 6.5298 10.1528 3.1393 17 1 7.9406 9.7034 3.2513 18 1 6.4934 11.5541 2.6492 19 1 5.8791 10.0780 4.4722 20 6 4.1962 7.3182 0.0656 21 6 3.6023 6.0637 -0.6088 22 1 2.5487 5.9507 -0.3533 23 8 3.7732 6.1229 -2.0264 24 6 4.2743 -0.0783 -0.0073 25 7 5.5515 -0.4104 -0.0007 26 6 5.6588 -1.7435 -0.0009 27 6 4.4183 -2.2752 -0.0009 28 7 3.5312 -1.2311 -0.0002 29 6 2.1709 -1.1767 -0.0005 30 1 -0.3635 0.0001 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3633 0.8898 0.5140 33 1 1.6500 2.1504 0.0004 34 1 2.7176 3.6715 0.0020 35 1 5.5626 4.9675 1.8735 36 1 3.7998 5.2057 2.0678 37 1 5.1420 10.5150 0.6839 38 1 4.9285 7.7825 -0.5948 39 1 3.4009 8.0278 0.2942 40 1 3.2993 6.8517 -2.4496 41 1 6.5835 -2.3015 -0.0013 42 1 4.1712 -3.3266 -0.0006 43 1 1.6077 -2.0983 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077435706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:08 Heat of formation + Delta-G solvation = 47.617114 kcal Electronic energy + Delta-G solvation = -27780.374886 eV Core-core repulsion = 23828.327604 eV Total energy + Delta-G solvation = -3952.047282 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.90414 -39.66710 -38.07437 -37.62487 -35.04764 -34.12086 -33.69774 -32.40197 -31.55223 -29.21816 -28.25262 -27.10511 -26.97420 -24.99231 -24.09740 -22.52216 -21.75080 -20.79721 -20.43220 -20.14590 -18.18717 -17.60584 -17.10420 -16.61984 -16.56399 -16.15599 -15.70155 -15.31251 -14.70954 -14.46318 -14.30919 -14.10573 -14.00320 -13.92070 -13.77998 -13.17210 -12.94040 -12.67733 -12.56836 -12.46205 -12.37186 -12.02086 -11.68986 -11.52536 -11.22562 -10.94673 -10.85735 -10.77170 -10.18685 -10.13682 -9.88994 -9.80881 -9.75590 -9.31292 -8.93878 -8.80766 -8.60455 -8.12659 -6.89291 -5.74107 -3.08420 0.06785 0.99260 2.24153 2.53677 2.88569 3.21780 3.42343 3.46240 3.47764 3.60760 3.86253 4.02859 4.24085 4.38763 4.46478 4.56082 4.64610 4.90404 4.99795 5.11479 5.13223 5.21664 5.23541 5.38218 5.45832 5.47183 5.59921 5.60564 5.67955 5.72868 5.83845 6.07916 6.13111 6.14516 6.42494 6.53012 6.65864 6.75901 6.91650 7.33767 7.48335 7.67076 7.75635 7.79666 8.13555 8.19590 8.42746 9.17439 9.77413 10.40425 11.37715 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.018701 B = 0.002748 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.888382 B =10186.603123 C =10821.226058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.120 4.120 3 C -0.059 4.059 4 C -0.076 4.076 5 C 0.558 3.442 6 O -0.498 6.498 7 N -0.710 5.710 8 C 0.141 3.859 9 H 0.108 0.892 10 C 0.130 3.870 11 N -0.599 5.599 12 C -0.228 4.228 13 H 0.081 0.919 14 C -0.007 4.007 15 N -0.925 5.925 16 Si 0.915 3.085 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.285 1.285 20 C 0.153 3.847 21 C 0.069 3.931 22 H 0.057 0.943 23 O -0.563 6.563 24 C 0.250 3.750 25 N -0.456 5.456 26 C 0.028 3.972 27 C -0.100 4.100 28 N -0.370 5.370 29 C 0.074 3.926 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.149 0.851 34 H 0.394 0.606 35 H 0.051 0.949 36 H 0.024 0.976 37 H 0.254 0.746 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.376 0.624 41 H 0.182 0.818 42 H 0.184 0.816 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.794 -22.775 -4.109 26.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.124 4.124 3 C -0.083 4.083 4 C -0.082 4.082 5 C 0.342 3.658 6 O -0.371 6.371 7 N -0.362 5.362 8 C 0.036 3.964 9 H 0.126 0.874 10 C 0.002 3.998 11 N -0.327 5.327 12 C -0.356 4.356 13 H 0.098 0.902 14 C -0.203 4.203 15 N -0.572 5.572 16 Si 0.746 3.254 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.211 1.211 20 C 0.028 3.972 21 C 0.009 3.991 22 H 0.075 0.925 23 O -0.368 6.368 24 C 0.003 3.997 25 N -0.174 5.174 26 C -0.123 4.123 27 C -0.230 4.230 28 N -0.043 5.043 29 C -0.049 4.049 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.166 0.834 34 H 0.228 0.772 35 H 0.070 0.930 36 H 0.042 0.958 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.223 0.777 41 H 0.199 0.801 42 H 0.201 0.799 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -11.756 -22.612 -3.970 25.793 hybrid contribution -1.100 0.387 0.509 1.272 sum -12.856 -22.225 -3.462 25.907 Atomic orbital electron populations 1.20711 0.88501 1.03775 1.03149 1.19256 0.97536 0.91212 1.04350 1.21597 0.92043 0.98693 0.95923 1.20286 0.92242 0.90265 1.05435 1.17508 0.87531 0.82623 0.78097 1.90914 1.12614 1.86744 1.46866 1.45760 1.09731 1.05384 1.75368 1.22285 0.95985 0.80299 0.97874 0.87413 1.21857 0.99065 0.86241 0.92616 1.44229 1.63821 1.00920 1.23749 1.19057 1.27055 0.88552 1.00982 0.90162 1.24807 1.00798 0.96726 0.98012 1.69904 1.48958 1.11937 1.26443 0.86142 0.79638 0.79629 0.80033 1.21010 1.21575 1.21130 1.21829 0.96870 0.90515 0.88011 1.23458 0.97217 0.97448 0.81024 0.92546 1.86472 1.75983 1.54591 1.19725 1.21549 0.86828 0.86184 1.05176 1.70860 1.13986 1.12828 1.19719 1.22727 0.97144 0.90461 1.01949 1.22668 0.89127 0.93004 1.18178 1.42878 1.05924 1.08817 1.46636 1.21408 0.81284 1.00298 1.01865 0.90455 0.91063 0.90357 0.83361 0.77177 0.93027 0.95823 0.93615 0.92084 0.93285 0.77667 0.80054 0.79876 0.81955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.39 9.97 36.00 0.36 -0.03 16 2 C -0.12 -0.87 5.82 -105.17 -0.61 -1.48 16 3 C -0.06 -0.55 9.26 -38.76 -0.36 -0.91 16 4 C -0.08 -1.08 6.06 -102.64 -0.62 -1.70 16 5 C 0.56 9.70 7.77 -12.61 -0.10 9.60 16 6 O -0.50 -11.00 15.84 5.24 0.08 -10.92 16 7 N -0.71 -11.00 5.15 -52.86 -0.27 -11.28 16 8 C 0.14 2.72 3.15 -65.78 -0.21 2.51 16 9 H 0.11 2.43 7.54 -51.93 -0.39 2.04 16 10 C 0.13 2.83 6.93 -2.53 -0.02 2.81 16 11 N -0.60 -15.49 3.39 -170.07 -0.58 -16.07 16 12 C -0.23 -6.46 10.28 -15.06 -0.15 -6.61 16 13 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 14 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 15 N -0.92 -26.90 10.31 55.49 0.57 -26.32 16 16 Si 0.92 22.29 29.55 -169.99 -5.02 17.27 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 C 0.15 3.64 5.15 -3.07 -0.02 3.62 16 21 C 0.07 1.26 3.97 -24.90 -0.10 1.16 16 22 H 0.06 0.89 8.00 -51.93 -0.42 0.47 16 23 O -0.56 -9.79 13.39 -35.23 -0.47 -10.26 16 24 C 0.25 3.79 7.67 -154.13 -1.18 2.61 16 25 N -0.46 -7.74 10.70 -11.32 -0.12 -7.86 16 26 C 0.03 0.33 11.83 -17.88 -0.21 0.12 16 27 C -0.10 -0.96 11.76 -16.40 -0.19 -1.15 16 28 N -0.37 -4.11 2.94 -61.10 -0.18 -4.29 16 29 C 0.07 0.57 10.48 -16.75 -0.18 0.39 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.17 8.05 -51.93 -0.42 -0.25 16 32 H 0.08 0.25 8.08 -51.93 -0.42 -0.17 16 33 H 0.15 0.98 6.48 -52.49 -0.34 0.64 16 34 H 0.39 4.58 6.66 -40.82 -0.27 4.30 16 35 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.06 1.64 7.30 -51.93 -0.38 1.26 16 39 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 40 H 0.38 4.95 9.12 45.56 0.42 5.36 16 41 H 0.18 1.57 8.06 -52.48 -0.42 1.15 16 42 H 0.18 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.16 0.61 8.04 -52.48 -0.42 0.19 16 LS Contribution 361.64 15.07 5.45 5.45 Total: -1.00 -38.63 361.64 -8.92 -47.54 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -4.69 Total: 6.09 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: -3.68 Total: 10.65 kcal Atomic # 7 Polarization: -65.24 SS G_CDS: -0.58 Total: -65.82 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.39 Total: -21.18 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.63 -8.92 -47.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077435706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.162 kcal (2) G-P(sol) polarization free energy of solvation -38.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds