Wall clock time and date at job start Tue Mar 31 2020 04:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39743 * 119.42476 * 2 1 4 4 C 1.38944 * 119.29210 * 180.02562 * 3 2 1 5 5 C 1.47220 * 120.86020 * 180.02562 * 4 3 2 6 6 O 1.21640 * 120.00085 * 179.97438 * 5 4 3 7 7 N 1.34778 * 119.99998 * 0.02562 * 5 4 3 8 8 C 1.46502 * 119.99724 * 180.02562 * 7 5 4 9 9 H 1.08997 * 110.92304 * 31.09424 * 8 7 5 10 10 C 1.54909 * 111.00219 * 267.19171 * 8 7 5 11 11 N 1.47426 * 104.83381 * 204.91950 * 10 8 7 12 12 C 1.36939 * 125.64917 * 204.16150 * 11 10 8 13 13 H 1.08001 * 119.99881 * 359.97438 * 12 11 10 14 14 C 1.38813 * 119.99940 * 179.97438 * 12 11 10 15 15 N 1.31615 * 120.00066 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00060 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.46743 * 59.99931 * 16 14 12 18 18 H 1.48495 * 109.47245 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46854 * 300.00070 * 16 14 12 20 20 C 1.47018 * 108.70104 * 24.12870 * 11 10 8 21 21 C 1.54322 * 107.27336 * 358.94171 * 20 11 10 22 22 H 1.09002 * 110.71963 * 96.17078 * 21 20 11 23 23 O 1.42901 * 110.71944 * 219.26540 * 21 20 11 24 24 C 1.46557 * 118.27744 * 0.27479 * 4 3 2 25 25 N 1.31978 * 132.71668 * 180.51380 * 24 4 3 26 26 C 1.33742 * 109.17274 * 179.48332 * 25 24 4 27 27 C 1.34957 * 108.60291 * 359.69755 * 26 25 24 28 28 N 1.37006 * 107.15240 * 359.97438 * 27 26 25 29 29 C 1.35107 * 119.43063 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47746 * 89.99571 * 1 2 3 31 31 H 1.09002 * 109.46826 * 209.99469 * 1 2 3 32 32 H 1.08994 * 109.47216 * 329.99022 * 1 2 3 33 33 H 1.07998 * 120.35663 * 0.02562 * 3 2 1 34 34 H 0.96998 * 120.00151 * 359.97438 * 7 5 4 35 35 H 1.08998 * 110.36917 * 86.07661 * 10 8 7 36 36 H 1.09009 * 110.46209 * 323.80298 * 10 8 7 37 37 H 0.96994 * 120.00360 * 180.02562 * 15 14 12 38 38 H 1.08998 * 109.88222 * 239.52595 * 20 11 10 39 39 H 1.09005 * 110.01447 * 118.43174 * 20 11 10 40 40 H 0.96689 * 114.00373 * 296.15847 * 23 21 20 41 41 H 1.08004 * 125.70255 * 179.67473 * 26 25 24 42 42 H 1.07999 * 126.42685 * 180.02562 * 27 26 25 43 43 H 1.08004 * 119.14158 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.2172 0.0000 4 6 3.5829 1.2139 -0.0005 5 6 4.3410 2.4760 0.0000 6 8 5.5572 2.4549 0.0000 7 7 3.6875 3.6547 0.0016 8 6 4.4419 4.9105 0.0015 9 1 5.3891 4.7956 -0.5254 10 6 4.6688 5.4219 1.4461 11 7 4.8502 6.8783 1.3067 12 6 5.5178 7.6873 2.1870 13 1 5.9662 7.2656 3.0745 14 6 5.6183 9.0493 1.9388 15 7 5.0715 9.5633 0.8576 16 14 6.5298 10.1528 3.1393 17 1 7.9406 9.7034 3.2513 18 1 6.4934 11.5541 2.6492 19 1 5.8791 10.0780 4.4722 20 6 4.1962 7.3182 0.0656 21 6 3.6023 6.0637 -0.6088 22 1 2.5487 5.9507 -0.3533 23 8 3.7732 6.1229 -2.0264 24 6 4.2743 -0.0783 -0.0073 25 7 5.5515 -0.4104 -0.0007 26 6 5.6588 -1.7435 -0.0009 27 6 4.4183 -2.2752 -0.0009 28 7 3.5312 -1.2311 -0.0002 29 6 2.1709 -1.1767 -0.0005 30 1 -0.3635 0.0001 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3633 0.8898 0.5140 33 1 1.6500 2.1504 0.0004 34 1 2.7176 3.6715 0.0020 35 1 5.5626 4.9675 1.8735 36 1 3.7998 5.2057 2.0678 37 1 5.1420 10.5150 0.6839 38 1 4.9285 7.7825 -0.5948 39 1 3.4009 8.0278 0.2942 40 1 3.2993 6.8517 -2.4496 41 1 6.5835 -2.3015 -0.0013 42 1 4.1712 -3.3266 -0.0006 43 1 1.6077 -2.0983 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077435706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:07 Heat of formation + Delta-G solvation = 17.010848 kcal Electronic energy + Delta-G solvation = -27781.702073 eV Core-core repulsion = 23828.327604 eV Total energy + Delta-G solvation = -3953.374469 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.71257 -41.05876 -39.42343 -38.61688 -36.68417 -35.64130 -34.67537 -33.66571 -32.89255 -30.44093 -29.73211 -28.70511 -27.55498 -26.56097 -25.40077 -23.48600 -22.50102 -22.42097 -21.94083 -21.58995 -19.28656 -18.82682 -18.63094 -18.03292 -17.60318 -17.22997 -16.98896 -16.51105 -16.09299 -15.85841 -15.69887 -15.59550 -15.01481 -14.72364 -14.54315 -14.47594 -14.27073 -14.22765 -13.79182 -13.50623 -13.21790 -13.17173 -13.15980 -12.80076 -12.77368 -12.70538 -12.41846 -12.13720 -11.89253 -11.79538 -11.55296 -11.27823 -10.99238 -10.82959 -10.76727 -10.23759 -9.67995 -8.98366 -8.91544 -7.89352 -5.26570 -0.73167 0.25742 1.44227 1.46144 1.49058 1.54968 1.64635 1.93650 2.02411 2.47266 2.57537 3.09231 3.11743 3.29914 3.35714 3.53504 3.55570 3.77890 3.82299 3.89750 4.05262 4.14568 4.29752 4.43877 4.44262 4.46954 4.53241 4.58522 4.70399 4.78679 4.81771 4.96514 4.97344 5.18737 5.26809 5.35252 5.39889 5.44315 5.51807 5.61915 5.65798 6.05418 6.12936 6.47874 6.88168 6.96010 7.04324 7.18554 7.68170 8.30753 9.20168 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.018701 B = 0.002748 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.888382 B =10186.603123 C =10821.226058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.127 4.127 3 C -0.019 4.019 4 C -0.134 4.134 5 C 0.558 3.442 6 O -0.563 6.563 7 N -0.692 5.692 8 C 0.154 3.846 9 H 0.067 0.933 10 C 0.131 3.869 11 N -0.621 5.621 12 C -0.251 4.251 13 H 0.079 0.921 14 C -0.059 4.059 15 N -0.947 5.947 16 Si 0.981 3.019 17 H -0.283 1.283 18 H -0.289 1.289 19 H -0.273 1.273 20 C 0.161 3.839 21 C 0.094 3.906 22 H 0.102 0.898 23 O -0.570 6.570 24 C 0.219 3.781 25 N -0.529 5.529 26 C -0.006 4.006 27 C -0.076 4.076 28 N -0.373 5.373 29 C 0.086 3.914 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.178 0.822 34 H 0.416 0.584 35 H 0.027 0.973 36 H 0.048 0.952 37 H 0.250 0.750 38 H 0.019 0.981 39 H 0.032 0.968 40 H 0.397 0.603 41 H 0.199 0.801 42 H 0.234 0.766 43 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.984 -25.273 -3.910 31.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.130 4.130 3 C -0.042 4.042 4 C -0.140 4.140 5 C 0.345 3.655 6 O -0.441 6.441 7 N -0.345 5.345 8 C 0.047 3.953 9 H 0.085 0.915 10 C 0.005 3.995 11 N -0.349 5.349 12 C -0.380 4.380 13 H 0.097 0.903 14 C -0.253 4.253 15 N -0.595 5.595 16 Si 0.808 3.192 17 H -0.209 1.209 18 H -0.215 1.215 19 H -0.199 1.199 20 C 0.035 3.965 21 C 0.034 3.966 22 H 0.120 0.880 23 O -0.378 6.378 24 C -0.029 4.029 25 N -0.249 5.249 26 C -0.155 4.155 27 C -0.205 4.205 28 N -0.045 5.045 29 C -0.036 4.036 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.195 0.805 34 H 0.255 0.745 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.038 0.962 39 H 0.050 0.950 40 H 0.247 0.753 41 H 0.216 0.784 42 H 0.251 0.749 43 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -16.018 -25.143 -3.781 30.050 hybrid contribution 0.106 1.024 0.422 1.112 sum -15.912 -24.119 -3.360 29.089 Atomic orbital electron populations 1.20816 0.85180 1.05330 1.04385 1.19746 0.99542 0.90057 1.03634 1.22089 0.90097 1.01222 0.90831 1.19943 0.93719 0.88265 1.12073 1.18110 0.87094 0.83953 0.76300 1.90870 1.15539 1.87668 1.50021 1.45412 1.10527 1.03639 1.74949 1.21739 0.95356 0.82358 0.95812 0.91459 1.21923 0.98808 0.84265 0.94535 1.44496 1.63915 1.02428 1.24074 1.19403 1.27553 0.89431 1.01617 0.90316 1.25639 1.01823 0.97962 0.99840 1.70105 1.49820 1.11805 1.27771 0.85127 0.78277 0.77436 0.78322 1.20897 1.21476 1.19875 1.21655 0.95176 0.92709 0.86960 1.23162 0.98663 0.93685 0.81137 0.88035 1.86441 1.76833 1.55650 1.18869 1.21675 0.87080 0.87777 1.06347 1.70728 1.16252 1.15567 1.22321 1.23222 0.99487 0.89438 1.03317 1.23374 0.87846 0.94437 1.14847 1.43133 1.07231 1.07845 1.46323 1.22381 0.79899 1.02658 0.98619 0.89200 0.88970 0.89513 0.80485 0.74505 0.95441 0.93426 0.94044 0.96236 0.95032 0.75267 0.78400 0.74930 0.77094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.15 9.97 71.24 0.71 0.56 16 2 C -0.13 -1.24 5.82 -20.22 -0.12 -1.36 16 3 C -0.02 -0.30 9.26 22.80 0.21 -0.08 16 4 C -0.13 -3.78 6.06 -18.58 -0.11 -3.89 16 5 C 0.56 20.27 7.77 86.60 0.67 20.95 16 6 O -0.56 -27.14 15.84 -4.16 -0.07 -27.21 16 7 N -0.69 -21.28 5.15 -439.40 -2.26 -23.55 16 8 C 0.15 6.12 3.15 46.38 0.15 6.27 16 9 H 0.07 3.26 7.54 -2.39 -0.02 3.24 16 10 C 0.13 5.91 6.93 86.85 0.60 6.52 16 11 N -0.62 -33.23 3.39 -691.98 -2.35 -35.58 16 12 C -0.25 -14.67 10.28 84.03 0.86 -13.80 16 13 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 14 C -0.06 -3.42 5.49 84.86 0.47 -2.96 16 15 N -0.95 -56.63 10.31 21.65 0.22 -56.40 16 16 Si 0.98 46.66 29.55 68.60 2.03 48.69 16 17 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 18 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 19 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 20 C 0.16 7.84 5.15 86.73 0.45 8.29 16 21 C 0.09 3.39 3.97 31.78 0.13 3.51 16 22 H 0.10 2.84 8.00 -2.39 -0.02 2.82 16 23 O -0.57 -19.37 13.39 -148.98 -2.00 -21.36 16 24 C 0.22 6.77 7.67 135.76 1.04 7.81 16 25 N -0.53 -19.18 10.70 -189.72 -2.03 -21.21 16 26 C -0.01 -0.16 11.83 83.65 0.99 0.83 16 27 C -0.08 -1.28 11.76 83.13 0.98 -0.30 16 28 N -0.37 -7.44 2.94 -347.21 -1.02 -8.46 16 29 C 0.09 0.91 10.48 83.30 0.87 1.79 16 30 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.09 -0.18 8.05 -2.39 -0.02 -0.20 16 32 H 0.09 0.05 8.08 -2.39 -0.02 0.03 16 33 H 0.18 1.56 6.48 -2.91 -0.02 1.54 16 34 H 0.42 8.63 6.66 -92.71 -0.62 8.01 16 35 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 37 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 38 H 0.02 1.10 7.30 -2.39 -0.02 1.08 16 39 H 0.03 1.63 7.51 -2.38 -0.02 1.61 16 40 H 0.40 9.86 9.12 -74.06 -0.68 9.18 16 41 H 0.20 3.63 8.06 -2.91 -0.02 3.60 16 42 H 0.23 1.27 8.06 -2.91 -0.02 1.24 16 43 H 0.21 0.10 8.04 -2.91 -0.02 0.08 16 Total: -1.00 -94.69 361.64 0.20 -94.50 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -0.22 Total: 16.46 kcal Atomic # 6 Polarization: 26.23 SS G_CDS: 7.89 Total: 34.13 kcal Atomic # 7 Polarization: -137.76 SS G_CDS: -7.44 Total: -145.20 kcal Atomic # 8 Polarization: -46.51 SS G_CDS: -2.06 Total: -48.57 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -94.69 0.20 -94.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077435706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.507 kcal (2) G-P(sol) polarization free energy of solvation -94.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds