Wall clock time and date at job start Tue Mar 31 2020 05:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35443 * 125.68523 * 2 1 4 4 N 1.36438 * 107.21808 * 180.02562 * 3 2 1 5 5 C 1.36726 * 132.26553 * 180.02562 * 4 3 2 6 6 C 1.34546 * 120.95302 * 179.97438 * 5 4 3 7 7 C 1.41774 * 120.14705 * 0.02562 * 6 5 4 8 8 C 1.47654 * 120.37115 * 179.97438 * 7 6 5 9 9 O 1.21583 * 119.99911 * 180.02562 * 8 7 6 10 10 N 1.34780 * 120.00043 * 359.97438 * 8 7 6 11 11 C 1.46499 * 120.00063 * 180.02562 * 10 8 7 12 12 H 1.08994 * 110.88757 * 34.30080 * 11 10 8 13 13 C 1.54906 * 111.03405 * 270.39491 * 11 10 8 14 14 N 1.47428 * 104.83099 * 204.89986 * 13 11 10 15 15 C 1.36940 * 125.65193 * 204.17516 * 14 13 11 16 16 H 1.08000 * 119.99447 * 354.82751 * 15 14 13 17 17 C 1.38805 * 119.99928 * 174.83228 * 15 14 13 18 18 N 1.31613 * 120.00339 * 7.05872 * 17 15 14 19 19 Si 1.86802 * 119.99653 * 187.06713 * 17 15 14 20 20 H 1.48501 * 109.47520 * 94.98432 * 19 17 15 21 21 H 1.48501 * 109.46920 * 214.98541 * 19 17 15 22 22 H 1.48501 * 109.47223 * 334.98395 * 19 17 15 23 23 C 1.47022 * 108.69920 * 24.13106 * 14 13 11 24 24 C 1.54319 * 107.27625 * 358.94200 * 23 14 13 25 25 H 1.08999 * 110.72212 * 96.16387 * 24 23 14 26 26 O 1.42897 * 110.72093 * 219.44578 * 24 23 14 27 27 C 1.38436 * 119.25789 * 0.22709 * 7 6 5 28 28 C 1.37185 * 106.97212 * 0.02562 * 4 3 2 29 29 N 1.32656 * 108.06308 * 359.97438 * 28 4 3 30 30 H 1.09005 * 109.46779 * 269.97399 * 1 2 3 31 31 H 1.08996 * 109.47414 * 29.97188 * 1 2 3 32 32 H 1.08998 * 109.47243 * 149.98323 * 1 2 3 33 33 H 1.08005 * 126.39701 * 0.02562 * 3 2 1 34 34 H 1.08004 * 119.52282 * 359.96227 * 5 4 3 35 35 H 1.07994 * 119.92233 * 179.97438 * 6 5 4 36 36 H 0.97006 * 119.99577 * 0.02562 * 10 8 7 37 37 H 1.08996 * 110.37044 * 323.74246 * 13 11 10 38 38 H 1.09006 * 110.36698 * 86.06589 * 13 11 10 39 39 H 0.97002 * 120.00203 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.88469 * 239.51953 * 23 14 13 41 41 H 1.09004 * 110.00750 * 118.42851 * 23 14 13 42 42 H 0.96703 * 113.99796 * 293.51604 * 26 24 23 43 43 H 1.07998 * 120.45690 * 179.72699 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2971 1.1001 0.0000 4 7 3.5913 0.6679 -0.0006 5 6 4.7840 1.3364 -0.0004 6 6 5.9518 0.6681 -0.0006 7 6 5.9608 -0.7496 -0.0016 8 6 7.2395 -1.4879 -0.0023 9 8 7.2394 -2.7038 -0.0036 10 7 8.4068 -0.8141 -0.0027 11 6 9.6755 -1.5467 -0.0040 12 1 9.5910 -2.4691 -0.5785 13 6 10.1529 -1.8343 1.4413 14 7 11.6155 -1.9850 1.3326 15 6 12.4129 -2.6812 2.2013 16 1 11.9897 -3.1084 3.0985 17 6 13.7649 -2.8376 1.9289 18 7 14.3092 -2.2030 0.9124 19 14 14.8119 -3.9491 3.0049 20 1 14.8942 -5.2986 2.3905 21 1 16.1767 -3.3769 3.1273 22 1 14.1971 -4.0556 4.3525 23 6 12.0759 -1.2650 0.1363 24 6 10.8291 -0.6598 -0.5426 25 1 10.6910 0.3782 -0.2402 26 8 10.9263 -0.7652 -1.9643 27 6 4.7575 -1.4339 -0.0071 28 6 3.5555 -0.7035 -0.0015 29 7 2.2840 -1.0817 -0.0009 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3633 -0.8898 -0.5141 33 1 1.9648 2.1278 0.0004 34 1 4.7888 2.4164 -0.0003 35 1 6.8842 1.2129 -0.0009 36 1 8.4068 0.1559 -0.0020 37 1 9.9053 -0.9989 2.0960 38 1 9.7033 -2.7551 1.8132 39 1 15.2541 -2.3121 0.7223 40 1 12.5702 -1.9570 -0.5456 41 1 12.7651 -0.4702 0.4216 42 1 11.6326 -0.2297 -2.3510 43 1 4.7418 -2.5138 -0.0123 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077674054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:31 Heat of formation + Delta-G solvation = 41.366662 kcal Electronic energy + Delta-G solvation = -27244.910706 eV Core-core repulsion = 23292.592384 eV Total energy + Delta-G solvation = -3952.318322 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.15518 -39.98468 -38.13279 -37.25186 -35.12832 -34.22500 -33.90253 -32.19500 -31.63065 -29.59135 -28.75696 -27.83061 -26.89756 -24.77108 -23.78896 -23.38867 -21.40101 -20.75859 -20.42218 -20.19765 -18.22290 -17.96347 -17.22647 -16.75836 -16.47869 -16.34023 -15.75996 -15.15864 -14.92156 -14.75142 -14.56369 -14.18519 -14.06129 -13.59357 -13.55091 -13.40751 -13.18882 -12.72190 -12.63312 -12.55571 -12.20834 -12.05377 -11.78662 -11.60347 -11.30182 -11.17125 -10.93147 -10.83197 -10.43017 -10.20137 -10.02942 -9.94703 -9.89847 -9.39031 -9.05671 -8.93683 -8.65190 -8.17500 -6.94629 -5.80625 -3.13843 0.20957 0.72746 2.21503 2.35526 2.76222 3.03265 3.38406 3.44210 3.45305 3.47795 3.85466 4.04404 4.24872 4.39328 4.47978 4.56418 4.64474 4.83911 4.86964 5.02484 5.13379 5.28623 5.32194 5.37453 5.38947 5.52107 5.54763 5.61690 5.67512 5.73232 5.77537 6.01482 6.05105 6.07360 6.27526 6.42504 6.58004 6.66841 6.80715 7.25824 7.44537 7.52094 7.55011 7.70863 8.06104 8.13634 8.23635 9.11806 9.72121 10.34985 11.31615 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.027578 B = 0.002261 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.049910 B =12380.814399 C =12884.709913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.057 3.943 3 C -0.093 4.093 4 N -0.353 5.353 5 C 0.049 3.951 6 C -0.115 4.115 7 C -0.118 4.118 8 C 0.562 3.438 9 O -0.526 6.526 10 N -0.706 5.706 11 C 0.138 3.862 12 H 0.107 0.893 13 C 0.130 3.870 14 N -0.600 5.600 15 C -0.230 4.230 16 H 0.081 0.919 17 C -0.006 4.006 18 N -0.922 5.922 19 Si 0.914 3.086 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.152 3.848 24 C 0.069 3.931 25 H 0.058 0.942 26 O -0.563 6.563 27 C -0.002 4.002 28 C 0.213 3.787 29 N -0.477 5.477 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.184 0.816 34 H 0.169 0.831 35 H 0.155 0.845 36 H 0.396 0.604 37 H 0.024 0.976 38 H 0.052 0.948 39 H 0.254 0.746 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.377 0.623 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.710 13.446 -4.142 25.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.077 4.077 3 C -0.226 4.226 4 N -0.025 5.025 5 C -0.072 4.072 6 C -0.136 4.136 7 C -0.127 4.127 8 C 0.348 3.652 9 O -0.403 6.403 10 N -0.357 5.357 11 C 0.033 3.967 12 H 0.125 0.875 13 C 0.002 3.998 14 N -0.327 5.327 15 C -0.358 4.358 16 H 0.099 0.901 17 C -0.203 4.203 18 N -0.569 5.569 19 Si 0.744 3.256 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.205 1.205 23 C 0.027 3.973 24 C 0.009 3.991 25 H 0.075 0.925 26 O -0.368 6.368 27 C -0.024 4.024 28 C -0.029 4.029 29 N -0.198 5.198 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.201 0.799 34 H 0.186 0.814 35 H 0.172 0.828 36 H 0.231 0.769 37 H 0.041 0.959 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.224 0.776 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -22.242 11.349 -4.036 25.294 hybrid contribution 1.504 1.375 0.479 2.093 sum -20.738 12.724 -3.558 24.589 Atomic orbital electron populations 1.20156 0.86654 1.03299 1.02896 1.21015 0.97025 0.87868 1.01809 1.22507 0.80729 1.01209 1.18123 1.42803 1.06191 1.08852 1.44647 1.21434 0.82660 0.98764 1.04379 1.20844 0.97756 0.93368 1.01642 1.19997 0.93887 0.93272 1.05525 1.17818 0.83168 0.87192 0.77027 1.90836 1.87237 1.13056 1.49159 1.45793 1.05568 1.09916 1.74398 1.22329 0.80017 0.95891 0.98429 0.87510 1.21860 0.86368 0.99148 0.92392 1.44239 1.00085 1.60537 1.27871 1.19086 0.89718 1.26131 1.00842 0.90076 1.24838 0.96811 1.00182 0.98420 1.69925 1.11712 1.44705 1.30553 0.86071 0.79600 0.80458 0.79484 1.21446 1.21745 1.20531 1.21836 0.90547 0.96026 0.88905 1.23447 0.97339 0.97278 0.81071 0.92464 1.86474 1.57838 1.72398 1.20042 1.20719 0.86427 1.01465 0.93746 1.20744 0.94273 0.80298 1.07545 1.70600 0.98050 1.29450 1.21711 0.90651 0.90750 0.90542 0.79872 0.81399 0.82761 0.76912 0.95856 0.92921 0.93615 0.91897 0.93443 0.77612 0.81584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.42 36.01 0.38 -0.09 16 2 C 0.06 0.58 7.06 -83.00 -0.59 0.00 16 3 C -0.09 -0.79 11.64 -16.50 -0.19 -0.98 16 4 N -0.35 -3.52 2.94 -62.74 -0.18 -3.71 16 5 C 0.05 0.36 10.91 -16.68 -0.18 0.18 16 6 C -0.12 -0.94 9.48 -39.54 -0.37 -1.32 16 7 C -0.12 -1.40 5.90 -104.63 -0.62 -2.01 16 8 C 0.56 8.45 7.77 -12.41 -0.10 8.36 16 9 O -0.53 -10.07 16.05 5.29 0.08 -9.99 16 10 N -0.71 -9.88 5.17 -52.73 -0.27 -10.15 16 11 C 0.14 2.51 3.09 -65.78 -0.20 2.31 16 12 H 0.11 2.26 7.63 -51.93 -0.40 1.86 16 13 C 0.13 2.71 6.93 -2.53 -0.02 2.69 16 14 N -0.60 -15.06 3.39 -170.07 -0.58 -15.64 16 15 C -0.23 -6.36 10.27 -15.06 -0.15 -6.51 16 16 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 17 C -0.01 -0.17 5.48 -17.44 -0.10 -0.27 16 18 N -0.92 -26.41 10.36 55.49 0.57 -25.83 16 19 Si 0.91 21.97 29.56 -169.99 -5.02 16.94 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.15 3.51 5.16 -3.07 -0.02 3.50 16 24 C 0.07 1.20 3.96 -24.90 -0.10 1.11 16 25 H 0.06 0.85 8.00 -51.93 -0.42 0.44 16 26 O -0.56 -9.27 13.39 -35.23 -0.47 -9.75 16 27 C 0.00 -0.03 9.70 -38.60 -0.37 -0.40 16 28 C 0.21 2.70 7.79 -155.97 -1.22 1.48 16 29 N -0.48 -6.37 11.31 -9.02 -0.10 -6.47 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.18 0.84 8.06 -52.48 -0.42 0.42 16 34 H 0.17 0.58 8.06 -52.48 -0.42 0.15 16 35 H 0.15 0.81 6.46 -52.49 -0.34 0.47 16 36 H 0.40 4.10 6.60 -40.82 -0.27 3.83 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.06 1.65 7.21 -51.93 -0.37 1.28 16 41 H 0.05 1.17 7.61 -51.93 -0.40 0.78 16 42 H 0.38 4.63 9.12 45.56 0.42 5.05 16 43 H 0.17 2.17 7.67 -52.49 -0.40 1.77 16 LS Contribution 362.33 15.07 5.46 5.46 Total: -1.00 -36.12 362.33 -9.04 -45.16 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -4.68 Total: 5.95 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: -3.85 Total: 8.03 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: -0.56 Total: -61.81 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.39 Total: -19.74 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.12 -9.04 -45.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077674054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.531 kcal (2) G-P(sol) polarization free energy of solvation -36.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds