Wall clock time and date at job start Tue Mar 31 2020 04:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35823 * 118.70217 * 2 1 4 4 C 1.40836 * 120.55376 * 179.97438 * 3 2 1 5 5 C 1.38432 * 134.89426 * 180.02562 * 4 3 2 6 6 N 1.33899 * 107.83848 * 179.38803 * 5 4 3 7 7 H 0.97001 * 125.01721 * 180.09096 * 6 5 4 8 8 N 1.39981 * 109.96272 * 0.53670 * 6 5 4 9 9 C 1.31477 * 109.01508 * 359.53087 * 8 6 5 10 10 C 1.46670 * 134.99022 * 179.97438 * 9 8 6 11 11 C 1.47162 * 120.72236 * 0.03039 * 10 9 8 12 12 O 1.21641 * 120.00714 * 359.71252 * 11 10 9 13 13 N 1.34778 * 119.99704 * 179.71834 * 11 10 9 14 14 C 1.46505 * 120.00074 * 179.97438 * 13 11 10 15 15 H 1.09004 * 110.88554 * 37.42252 * 14 13 11 16 16 C 1.54914 * 111.00202 * 273.54598 * 14 13 11 17 17 N 1.47426 * 104.82992 * 204.91694 * 16 14 13 18 18 C 1.36936 * 125.64583 * 204.09666 * 17 16 14 19 19 H 1.08004 * 120.00261 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00145 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99550 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00112 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47257 * 90.00190 * 22 20 18 24 24 H 1.48507 * 109.47158 * 210.00140 * 22 20 18 25 25 H 1.48503 * 109.47321 * 329.99764 * 22 20 18 26 26 C 1.47018 * 108.70517 * 24.12623 * 17 16 14 27 27 C 1.54325 * 107.40412 * 358.86539 * 26 17 16 28 28 H 1.09000 * 110.72188 * 96.24097 * 27 26 17 29 29 O 1.42893 * 110.72271 * 219.52456 * 27 26 17 30 30 C 1.38589 * 118.54922 * 179.74951 * 10 9 8 31 31 H 1.09004 * 109.47415 * 270.02563 * 1 2 3 32 32 H 1.09008 * 109.47008 * 30.02254 * 1 2 3 33 33 H 1.09000 * 109.47470 * 150.02614 * 1 2 3 34 34 H 1.08001 * 119.72130 * 359.96618 * 3 2 1 35 35 H 1.07994 * 126.08153 * 359.96494 * 5 4 3 36 36 H 0.96998 * 120.00184 * 359.97438 * 13 11 10 37 37 H 1.08999 * 110.37121 * 86.07429 * 16 14 13 38 38 H 1.09003 * 110.36718 * 323.75334 * 16 14 13 39 39 H 0.97004 * 119.99606 * 179.97438 * 21 20 18 40 40 H 1.09002 * 109.88241 * 118.36067 * 26 17 16 41 41 H 1.09000 * 109.88049 * 239.37196 * 26 17 16 42 42 H 0.96708 * 113.99585 * 298.54470 * 29 27 26 43 43 H 1.07998 * 119.32072 * 180.23029 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1593 1.1913 0.0000 4 6 3.5669 1.2368 0.0005 5 6 4.5118 2.2486 0.0011 6 7 5.7233 1.6784 0.0151 7 1 6.5651 2.1602 0.0198 8 7 5.5955 0.2845 0.0115 9 6 4.3185 -0.0286 0.0057 10 6 3.5585 -1.2830 -0.0005 11 6 4.2508 -2.5816 -0.0005 12 8 5.4665 -2.6228 -0.0006 13 7 3.5378 -3.7254 -0.0005 14 6 4.2270 -5.0182 -0.0011 15 1 5.1237 -4.9808 0.6175 16 6 4.5666 -5.4657 -1.4448 17 7 4.6629 -6.9350 -1.3716 18 6 5.3711 -7.7321 -2.2308 19 1 5.9224 -7.2898 -3.0474 20 6 5.3805 -9.1087 -2.0522 21 7 4.7083 -9.6477 -1.0573 22 14 6.3460 -10.1960 -3.2247 23 1 7.7291 -10.3699 -2.7132 24 1 5.6857 -11.5223 -3.3271 25 1 6.3905 -9.5605 -4.5661 26 6 3.8722 -7.4027 -0.2238 27 6 3.2777 -6.1566 0.4657 28 1 2.2596 -5.9744 0.1218 29 8 3.3150 -6.2991 1.8870 30 6 2.1741 -1.2186 -0.0004 31 1 -0.3634 0.0005 1.0277 32 1 -0.3633 0.8899 -0.5142 33 1 -0.3634 -0.8902 -0.5134 34 1 1.5938 2.1115 -0.0006 35 1 4.3080 3.3091 0.0008 36 1 2.5684 -3.6926 -0.0002 37 1 5.5183 -5.0383 -1.7605 38 1 3.7717 -5.1714 -2.1301 39 1 4.7145 -10.6097 -0.9328 40 1 3.0692 -8.0546 -0.5678 41 1 4.5139 -7.9415 0.4735 42 1 2.7999 -7.0464 2.2210 43 1 1.6020 -2.1346 -0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077837780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:08 Heat of formation + Delta-G solvation = 45.443715 kcal Electronic energy + Delta-G solvation = -27662.759789 eV Core-core repulsion = 23710.618262 eV Total energy + Delta-G solvation = -3952.141528 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.44177 -39.53303 -37.92494 -37.33665 -35.00202 -33.96067 -32.71522 -31.78809 -31.23900 -30.27874 -28.24551 -26.98373 -26.64654 -24.83376 -24.15939 -22.12726 -21.29904 -20.55476 -20.15953 -19.75602 -18.38681 -17.36853 -17.12716 -16.68449 -16.48186 -15.68629 -15.21736 -15.07895 -14.69379 -14.41514 -14.30966 -14.02777 -13.91792 -13.68999 -13.49174 -12.98474 -12.65483 -12.44157 -12.40452 -12.17102 -11.99902 -11.84842 -11.53737 -11.30355 -11.19182 -10.83674 -10.77731 -10.66708 -10.37576 -10.11963 -9.83488 -9.77417 -9.62540 -9.25198 -9.04380 -8.73306 -8.56821 -7.75292 -6.86020 -5.71921 -3.05751 0.13817 1.54993 2.06050 2.45678 3.05658 3.34955 3.43122 3.47937 3.49756 3.84232 4.00047 4.26981 4.48746 4.63857 4.66150 4.69920 4.91108 5.04516 5.14943 5.22163 5.27431 5.36093 5.42140 5.49126 5.65129 5.71689 5.72992 5.78392 5.87930 5.95845 6.14395 6.19891 6.20265 6.35281 6.56727 6.62877 6.72968 6.81897 6.99639 7.36989 7.42782 7.51063 7.76041 7.83894 8.16818 8.22334 8.57106 9.20078 9.80050 10.43584 11.40062 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.018010 B = 0.002763 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.339231 B =10130.422685 C =10898.828860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.135 4.135 3 C -0.019 4.019 4 C -0.215 4.215 5 C 0.085 3.915 6 N -0.431 5.431 7 H 0.444 0.556 8 N -0.264 5.264 9 C 0.134 3.866 10 C -0.105 4.105 11 C 0.555 3.445 12 O -0.518 6.518 13 N -0.713 5.713 14 C 0.142 3.858 15 H 0.102 0.898 16 C 0.130 3.870 17 N -0.600 5.600 18 C -0.226 4.226 19 H 0.081 0.919 20 C -0.009 4.009 21 N -0.925 5.925 22 Si 0.915 3.085 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.153 3.847 27 C 0.069 3.931 28 H 0.058 0.942 29 O -0.563 6.563 30 C -0.030 4.030 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.126 0.874 35 H 0.189 0.811 36 H 0.394 0.606 37 H 0.051 0.949 38 H 0.024 0.976 39 H 0.253 0.747 40 H 0.049 0.951 41 H 0.061 0.939 42 H 0.377 0.623 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.436 25.177 4.348 27.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.137 4.137 3 C -0.039 4.039 4 C -0.225 4.225 5 C -0.072 4.072 6 N -0.131 5.131 7 H 0.289 0.711 8 N -0.090 5.090 9 C -0.025 4.025 10 C -0.111 4.111 11 C 0.342 3.658 12 O -0.394 6.394 13 N -0.365 5.365 14 C 0.037 3.963 15 H 0.120 0.880 16 C 0.003 3.997 17 N -0.328 5.328 18 C -0.354 4.354 19 H 0.099 0.901 20 C -0.205 4.205 21 N -0.573 5.573 22 Si 0.745 3.255 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.027 3.973 27 C 0.009 3.991 28 H 0.076 0.924 29 O -0.368 6.368 30 C -0.053 4.053 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.143 0.857 35 H 0.206 0.794 36 H 0.229 0.771 37 H 0.070 0.930 38 H 0.042 0.958 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.224 0.776 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.861 24.937 4.278 26.494 hybrid contribution -0.711 -0.469 -0.562 1.020 sum -8.572 24.468 3.716 26.191 Atomic orbital electron populations 1.20786 0.90703 1.02869 1.02290 1.19056 0.96378 0.92288 1.05932 1.20085 0.90804 0.97624 0.95407 1.19547 0.94784 0.91633 1.16565 1.22724 0.85240 0.98962 1.00287 1.46597 1.08111 1.06330 1.52038 0.71134 1.77917 1.16845 0.87260 1.26969 1.21504 0.90087 0.92968 0.97900 1.19951 0.91989 0.89816 1.09362 1.17880 0.87314 0.83352 0.77258 1.90857 1.13006 1.87200 1.48359 1.45812 1.09668 1.05562 1.75442 1.22274 0.95892 0.79715 0.98440 0.87978 1.21862 0.99198 0.86122 0.92551 1.44247 1.57351 0.99513 1.31671 1.19107 1.22696 0.87843 1.05755 0.90147 1.24806 1.00439 0.96556 0.98664 1.69923 1.45465 1.10391 1.31506 0.86065 0.79381 0.79901 0.80109 1.21524 1.21675 1.20637 1.21833 0.95289 0.90543 0.89606 1.23482 0.97176 0.97412 0.81061 0.92436 1.86464 1.75659 1.53780 1.20918 1.21158 0.92226 0.98107 0.93793 0.91356 0.91677 0.91414 0.85659 0.79403 0.77120 0.93033 0.95819 0.93709 0.93304 0.92122 0.77632 0.84953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 9.93 36.01 0.36 -0.30 16 2 C -0.13 -1.21 5.82 -105.23 -0.61 -1.82 16 3 C -0.02 -0.16 9.58 -39.46 -0.38 -0.54 16 4 C -0.22 -2.27 6.34 -105.21 -0.67 -2.94 16 5 C 0.09 0.62 12.08 -16.58 -0.20 0.42 16 6 N -0.43 -3.97 7.18 30.86 0.22 -3.75 16 7 H 0.44 2.33 8.96 -182.69 -1.64 0.70 16 8 N -0.26 -4.09 12.24 34.35 0.42 -3.67 16 9 C 0.13 2.00 7.27 -80.98 -0.59 1.41 16 10 C -0.10 -1.56 6.05 -102.74 -0.62 -2.18 16 11 C 0.56 10.05 7.76 -12.64 -0.10 9.95 16 12 O -0.52 -11.64 16.07 5.24 0.08 -11.56 16 13 N -0.71 -11.72 5.18 -52.74 -0.27 -12.00 16 14 C 0.14 2.85 3.05 -65.64 -0.20 2.65 16 15 H 0.10 2.36 7.73 -51.93 -0.40 1.96 16 16 C 0.13 2.94 6.93 -2.53 -0.02 2.92 16 17 N -0.60 -15.84 3.39 -170.07 -0.58 -16.42 16 18 C -0.23 -6.48 10.28 -15.06 -0.15 -6.64 16 19 H 0.08 2.25 7.83 -52.48 -0.41 1.83 16 20 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -27.19 10.31 55.49 0.57 -26.62 16 22 Si 0.92 22.53 29.55 -169.99 -5.02 17.51 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 C 0.15 3.70 5.14 -3.07 -0.02 3.68 16 27 C 0.07 1.30 3.97 -24.76 -0.10 1.21 16 28 H 0.06 0.95 8.00 -51.93 -0.42 0.53 16 29 O -0.56 -10.01 13.40 -35.23 -0.47 -10.49 16 30 C -0.03 -0.33 9.08 -39.20 -0.36 -0.68 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.31 8.04 -51.92 -0.42 -0.11 16 33 H 0.07 0.37 8.06 -51.93 -0.42 -0.04 16 34 H 0.13 0.65 8.04 -52.49 -0.42 0.23 16 35 H 0.19 0.38 8.06 -52.49 -0.42 -0.04 16 36 H 0.39 5.06 6.56 -40.82 -0.27 4.79 16 37 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.05 1.26 7.50 -51.93 -0.39 0.87 16 41 H 0.06 1.65 7.29 -51.93 -0.38 1.27 16 42 H 0.38 5.12 9.11 45.56 0.42 5.53 16 43 H 0.13 1.13 6.37 -52.49 -0.33 0.79 16 LS Contribution 361.71 15.07 5.45 5.45 Total: -1.00 -39.26 361.71 -9.25 -48.51 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.90 Total: 6.22 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -3.75 Total: 6.80 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: 0.36 Total: -62.45 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.39 Total: -22.05 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -39.26 -9.25 -48.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077837780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.955 kcal (2) G-P(sol) polarization free energy of solvation -39.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds