Wall clock time and date at job start Tue Mar 31 2020 04:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35823 * 118.70217 * 2 1 4 4 C 1.40836 * 120.55376 * 179.97438 * 3 2 1 5 5 C 1.38432 * 134.89426 * 180.02562 * 4 3 2 6 6 N 1.33899 * 107.83848 * 179.38803 * 5 4 3 7 7 H 0.97001 * 125.01721 * 180.09096 * 6 5 4 8 8 N 1.39981 * 109.96272 * 0.53670 * 6 5 4 9 9 C 1.31477 * 109.01508 * 359.53087 * 8 6 5 10 10 C 1.46670 * 134.99022 * 179.97438 * 9 8 6 11 11 C 1.47162 * 120.72236 * 0.03039 * 10 9 8 12 12 O 1.21641 * 120.00714 * 359.71252 * 11 10 9 13 13 N 1.34778 * 119.99704 * 179.71834 * 11 10 9 14 14 C 1.46505 * 120.00074 * 179.97438 * 13 11 10 15 15 H 1.09004 * 110.88554 * 37.42252 * 14 13 11 16 16 C 1.54914 * 111.00202 * 273.54598 * 14 13 11 17 17 N 1.47426 * 104.82992 * 204.91694 * 16 14 13 18 18 C 1.36936 * 125.64583 * 204.09666 * 17 16 14 19 19 H 1.08004 * 120.00261 * 0.02562 * 18 17 16 20 20 C 1.38814 * 120.00145 * 180.02562 * 18 17 16 21 21 N 1.31617 * 119.99550 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00112 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47257 * 90.00190 * 22 20 18 24 24 H 1.48507 * 109.47158 * 210.00140 * 22 20 18 25 25 H 1.48503 * 109.47321 * 329.99764 * 22 20 18 26 26 C 1.47018 * 108.70517 * 24.12623 * 17 16 14 27 27 C 1.54325 * 107.40412 * 358.86539 * 26 17 16 28 28 H 1.09000 * 110.72188 * 96.24097 * 27 26 17 29 29 O 1.42893 * 110.72271 * 219.52456 * 27 26 17 30 30 C 1.38589 * 118.54922 * 179.74951 * 10 9 8 31 31 H 1.09004 * 109.47415 * 270.02563 * 1 2 3 32 32 H 1.09008 * 109.47008 * 30.02254 * 1 2 3 33 33 H 1.09000 * 109.47470 * 150.02614 * 1 2 3 34 34 H 1.08001 * 119.72130 * 359.96618 * 3 2 1 35 35 H 1.07994 * 126.08153 * 359.96494 * 5 4 3 36 36 H 0.96998 * 120.00184 * 359.97438 * 13 11 10 37 37 H 1.08999 * 110.37121 * 86.07429 * 16 14 13 38 38 H 1.09003 * 110.36718 * 323.75334 * 16 14 13 39 39 H 0.97004 * 119.99606 * 179.97438 * 21 20 18 40 40 H 1.09002 * 109.88241 * 118.36067 * 26 17 16 41 41 H 1.09000 * 109.88049 * 239.37196 * 26 17 16 42 42 H 0.96708 * 113.99585 * 298.54470 * 29 27 26 43 43 H 1.07998 * 119.32072 * 180.23029 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1593 1.1913 0.0000 4 6 3.5669 1.2368 0.0005 5 6 4.5118 2.2486 0.0011 6 7 5.7233 1.6784 0.0151 7 1 6.5651 2.1602 0.0198 8 7 5.5955 0.2845 0.0115 9 6 4.3185 -0.0286 0.0057 10 6 3.5585 -1.2830 -0.0005 11 6 4.2508 -2.5816 -0.0005 12 8 5.4665 -2.6228 -0.0006 13 7 3.5378 -3.7254 -0.0005 14 6 4.2270 -5.0182 -0.0011 15 1 5.1237 -4.9808 0.6175 16 6 4.5666 -5.4657 -1.4448 17 7 4.6629 -6.9350 -1.3716 18 6 5.3711 -7.7321 -2.2308 19 1 5.9224 -7.2898 -3.0474 20 6 5.3805 -9.1087 -2.0522 21 7 4.7083 -9.6477 -1.0573 22 14 6.3460 -10.1960 -3.2247 23 1 7.7291 -10.3699 -2.7132 24 1 5.6857 -11.5223 -3.3271 25 1 6.3905 -9.5605 -4.5661 26 6 3.8722 -7.4027 -0.2238 27 6 3.2777 -6.1566 0.4657 28 1 2.2596 -5.9744 0.1218 29 8 3.3150 -6.2991 1.8870 30 6 2.1741 -1.2186 -0.0004 31 1 -0.3634 0.0005 1.0277 32 1 -0.3633 0.8899 -0.5142 33 1 -0.3634 -0.8902 -0.5134 34 1 1.5938 2.1115 -0.0006 35 1 4.3080 3.3091 0.0008 36 1 2.5684 -3.6926 -0.0002 37 1 5.5183 -5.0383 -1.7605 38 1 3.7717 -5.1714 -2.1301 39 1 4.7145 -10.6097 -0.9328 40 1 3.0692 -8.0546 -0.5678 41 1 4.5139 -7.9415 0.4735 42 1 2.7999 -7.0464 2.2210 43 1 1.6020 -2.1346 -0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077837780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:07 Heat of formation + Delta-G solvation = 12.376386 kcal Electronic energy + Delta-G solvation = -27664.193696 eV Core-core repulsion = 23710.618262 eV Total energy + Delta-G solvation = -3953.575435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.22499 -40.94880 -39.39202 -38.27821 -36.69051 -35.58244 -33.85133 -33.32031 -32.10225 -31.22030 -30.03087 -28.71578 -27.26756 -26.48838 -25.37692 -23.32462 -22.36666 -22.00534 -21.75435 -20.92227 -19.21527 -19.00973 -18.46926 -17.94597 -17.69757 -17.29608 -16.53917 -16.20493 -15.88600 -15.83896 -15.50827 -15.37241 -15.18371 -14.75893 -14.49015 -14.31223 -14.14523 -14.08117 -13.74823 -13.19339 -13.14945 -13.01443 -12.79876 -12.76713 -12.74548 -12.47709 -12.17396 -12.09982 -11.89996 -11.56260 -11.53934 -11.17545 -11.06588 -10.79008 -10.75333 -10.21961 -9.81702 -8.99198 -8.52774 -7.90509 -5.27831 -0.63067 0.82869 1.17793 1.43979 1.46929 1.55327 1.82604 2.02547 2.04884 2.46589 2.87360 3.09961 3.27408 3.29979 3.51570 3.56418 3.78207 3.89241 4.03670 4.11947 4.14466 4.21753 4.40796 4.45462 4.48743 4.53308 4.59141 4.75388 4.79601 4.97705 5.05516 5.07174 5.18018 5.34186 5.36799 5.42081 5.42375 5.44292 5.63814 5.67829 5.93479 6.11665 6.29350 6.54413 6.66040 6.86429 7.03194 7.26954 7.66568 8.29807 9.19356 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.018010 B = 0.002763 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.339231 B =10130.422685 C =10898.828860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.161 4.161 3 C 0.013 3.987 4 C -0.246 4.246 5 C 0.133 3.867 6 N -0.425 5.425 7 H 0.458 0.542 8 N -0.348 5.348 9 C 0.107 3.893 10 C -0.168 4.168 11 C 0.553 3.447 12 O -0.579 6.579 13 N -0.698 5.698 14 C 0.156 3.844 15 H 0.064 0.936 16 C 0.133 3.867 17 N -0.621 5.621 18 C -0.251 4.251 19 H 0.078 0.922 20 C -0.060 4.060 21 N -0.947 5.947 22 Si 0.982 3.018 23 H -0.288 1.288 24 H -0.286 1.286 25 H -0.270 1.270 26 C 0.161 3.839 27 C 0.094 3.906 28 H 0.100 0.900 29 O -0.569 6.569 30 C 0.002 3.998 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.171 0.829 35 H 0.254 0.746 36 H 0.414 0.586 37 H 0.026 0.974 38 H 0.042 0.958 39 H 0.251 0.749 40 H 0.031 0.969 41 H 0.022 0.978 42 H 0.397 0.603 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.514 28.655 4.148 31.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.163 4.163 3 C -0.007 4.007 4 C -0.256 4.256 5 C -0.026 4.026 6 N -0.125 5.125 7 H 0.306 0.694 8 N -0.175 5.175 9 C -0.050 4.050 10 C -0.175 4.175 11 C 0.343 3.657 12 O -0.460 6.460 13 N -0.351 5.351 14 C 0.049 3.951 15 H 0.082 0.918 16 C 0.006 3.994 17 N -0.349 5.349 18 C -0.380 4.380 19 H 0.096 0.904 20 C -0.253 4.253 21 N -0.595 5.595 22 Si 0.810 3.190 23 H -0.215 1.215 24 H -0.212 1.212 25 H -0.194 1.194 26 C 0.035 3.965 27 C 0.034 3.966 28 H 0.117 0.883 29 O -0.377 6.377 30 C -0.020 4.020 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.188 0.812 35 H 0.269 0.731 36 H 0.252 0.748 37 H 0.044 0.956 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.040 0.960 42 H 0.248 0.752 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.983 28.429 4.090 30.750 hybrid contribution 0.220 -1.292 -0.469 1.392 sum -10.763 27.137 3.622 29.417 Atomic orbital electron populations 1.20801 0.88132 1.04013 1.03152 1.19406 0.98114 0.91596 1.07173 1.20652 0.90020 0.99277 0.90725 1.20064 0.96180 0.90609 1.18730 1.23774 0.83311 1.00962 0.94519 1.46625 1.09843 1.04916 1.51104 0.69445 1.77808 1.18201 0.90455 1.31027 1.21861 0.90779 0.94626 0.97741 1.19718 0.93440 0.88071 1.16253 1.18559 0.86837 0.84737 0.75557 1.90806 1.15685 1.88061 1.51403 1.45524 1.10453 1.03893 1.75241 1.21746 0.95434 0.81947 0.95992 0.91822 1.21894 0.98507 0.84335 0.94658 1.44516 1.57533 1.00935 1.31934 1.19435 1.23371 0.88750 1.06413 0.90423 1.25658 1.01537 0.97691 1.00428 1.70120 1.46312 1.10352 1.32717 0.85032 0.77612 0.77911 0.78459 1.21541 1.21214 1.19438 1.21661 0.93798 0.92530 0.88481 1.23176 0.98229 0.93827 0.81380 0.88291 1.86432 1.76505 1.54914 1.19803 1.21505 0.90669 1.00179 0.89628 0.90558 0.89831 0.91123 0.81163 0.73051 0.74756 0.95571 0.93982 0.94008 0.95059 0.96004 0.75236 0.83101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 9.93 71.24 0.71 -0.07 16 2 C -0.16 -2.32 5.82 -20.26 -0.12 -2.44 16 3 C 0.01 0.17 9.58 22.35 0.21 0.38 16 4 C -0.25 -4.50 6.34 -20.25 -0.13 -4.63 16 5 C 0.13 1.39 12.08 84.42 1.02 2.41 16 6 N -0.42 -7.30 7.18 -56.28 -0.40 -7.70 16 7 H 0.46 4.27 8.96 -213.40 -1.91 2.35 16 8 N -0.35 -11.31 12.24 -45.22 -0.55 -11.86 16 9 C 0.11 3.27 7.27 43.75 0.32 3.58 16 10 C -0.17 -5.14 6.05 -18.65 -0.11 -5.25 16 11 C 0.55 21.33 7.76 86.59 0.67 22.00 16 12 O -0.58 -28.56 16.07 -4.16 -0.07 -28.63 16 13 N -0.70 -23.55 5.18 -439.02 -2.28 -25.82 16 14 C 0.16 6.51 3.05 46.47 0.14 6.66 16 15 H 0.06 3.18 7.73 -2.39 -0.02 3.16 16 16 C 0.13 6.30 6.93 86.86 0.60 6.90 16 17 N -0.62 -34.23 3.39 -691.97 -2.35 -36.58 16 18 C -0.25 -14.95 10.28 84.03 0.86 -14.09 16 19 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 20 C -0.06 -3.51 5.49 84.86 0.47 -3.04 16 21 N -0.95 -57.29 10.31 21.65 0.22 -57.07 16 22 Si 0.98 47.27 29.55 68.60 2.03 49.29 16 23 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 24 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 25 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 26 C 0.16 8.07 5.14 86.73 0.45 8.52 16 27 C 0.09 3.57 3.97 31.87 0.13 3.70 16 28 H 0.10 3.02 8.00 -2.39 -0.02 3.00 16 29 O -0.57 -19.99 13.40 -148.98 -2.00 -21.99 16 30 C 0.00 0.05 9.08 22.52 0.20 0.25 16 31 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.08 0.34 8.04 -2.38 -0.02 0.32 16 33 H 0.07 0.50 8.06 -2.39 -0.02 0.48 16 34 H 0.17 0.58 8.04 -2.91 -0.02 0.55 16 35 H 0.25 -0.84 8.06 -2.91 -0.02 -0.86 16 36 H 0.41 10.22 6.56 -92.71 -0.61 9.61 16 37 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 40 H 0.03 1.66 7.50 -2.39 -0.02 1.64 16 41 H 0.02 1.25 7.29 -2.39 -0.02 1.23 16 42 H 0.40 10.37 9.11 -74.05 -0.67 9.69 16 43 H 0.15 2.24 6.37 -2.91 -0.02 2.22 16 Total: -1.00 -95.60 361.71 -2.08 -97.68 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -2.10 Total: 17.80 kcal Atomic # 6 Polarization: 19.47 SS G_CDS: 5.42 Total: 24.89 kcal Atomic # 7 Polarization: -133.68 SS G_CDS: -5.36 Total: -139.04 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -2.06 Total: -50.61 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.29 kcal Total: -95.60 -2.08 -97.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077837780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.053 kcal (2) G-P(sol) polarization free energy of solvation -95.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds