Wall clock time and date at job start Tue Mar 31 2020 05:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30086 * 124.97948 * 2 1 4 4 C 1.35853 * 109.54000 * 179.97438 * 3 2 1 5 5 C 1.39718 * 133.51240 * 179.97438 * 4 3 2 6 6 C 1.37846 * 120.10380 * 180.02562 * 5 4 3 7 7 C 1.38326 * 120.73060 * 359.97438 * 6 5 4 8 8 C 1.39396 * 120.28243 * 0.02562 * 7 6 5 9 9 C 1.47526 * 120.24934 * 179.97438 * 8 7 6 10 10 O 1.21593 * 119.99657 * 180.02562 * 9 8 7 11 11 N 1.34776 * 120.00053 * 359.97438 * 9 8 7 12 12 C 1.46496 * 120.00084 * 180.02562 * 11 9 8 13 13 H 1.09008 * 110.91253 * 37.45558 * 12 11 9 14 14 C 1.54908 * 111.00674 * 273.55347 * 12 11 9 15 15 N 1.47425 * 104.92961 * 204.86080 * 14 12 11 16 16 C 1.36938 * 125.65179 * 204.15650 * 15 14 12 17 17 H 1.08005 * 119.99558 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00146 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00086 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99779 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47294 * 89.99594 * 20 18 16 22 22 H 1.48503 * 109.46797 * 209.99511 * 20 18 16 23 23 H 1.48500 * 109.47035 * 329.99310 * 20 18 16 24 24 C 1.47290 * 108.55742 * 24.15407 * 15 14 12 25 25 C 1.54325 * 107.30599 * 358.92448 * 24 15 14 26 26 H 1.08997 * 110.72163 * 96.18354 * 25 24 15 27 27 O 1.42898 * 110.87178 * 219.38109 * 25 24 15 28 28 C 1.40187 * 119.50149 * 0.24960 * 8 7 6 29 29 N 1.36123 * 124.97869 * 179.97438 * 2 1 3 30 30 H 0.97001 * 126.30922 * 0.03287 * 29 2 1 31 31 H 1.09002 * 109.47636 * 90.02286 * 1 2 3 32 32 H 1.09005 * 109.46866 * 210.01864 * 1 2 3 33 33 H 1.09000 * 109.47272 * 330.01305 * 1 2 3 34 34 H 1.07994 * 119.94916 * 359.97438 * 5 4 3 35 35 H 1.08003 * 119.62771 * 180.02562 * 6 5 4 36 36 H 1.07994 * 119.85648 * 180.02562 * 7 6 5 37 37 H 0.97000 * 119.99844 * 0.02562 * 11 9 8 38 38 H 1.09002 * 110.36632 * 323.75475 * 14 12 11 39 39 H 1.08995 * 110.36781 * 85.96712 * 14 12 11 40 40 H 0.96999 * 120.00175 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.85762 * 239.50064 * 24 15 14 42 42 H 1.08995 * 110.00297 * 118.43011 * 24 15 14 43 43 H 0.96700 * 114.00884 * 293.61196 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2527 1.0659 0.0000 4 6 3.5622 0.7042 0.0006 5 6 4.7592 1.4248 0.0004 6 6 5.9666 0.7597 0.0006 7 6 6.0121 -0.6228 0.0015 8 6 4.8321 -1.3649 0.0018 9 6 4.8814 -2.8393 0.0022 10 8 3.8492 -3.4821 0.0019 11 7 6.0704 -3.4738 0.0019 12 6 6.1194 -4.9380 0.0018 13 1 5.3244 -5.3538 -0.6173 14 6 6.0487 -5.4961 1.4451 15 7 6.6977 -6.8178 1.3734 16 6 6.4800 -7.8616 2.2328 17 1 5.7811 -7.7523 3.0489 18 6 7.1584 -9.0596 2.0556 19 7 8.0106 -9.1925 1.0613 20 14 6.8609 -10.4835 3.2275 21 1 5.7494 -11.3236 2.7136 22 1 8.0941 -11.3042 3.3323 23 1 6.5027 -9.9547 4.5681 24 6 7.6181 -6.8264 0.2235 25 6 7.5096 -5.4479 -0.4617 26 1 8.2997 -4.7818 -0.1154 27 8 7.5508 -5.5815 -1.8838 28 6 3.5981 -0.6996 -0.0043 29 7 2.2873 -1.1153 0.0005 30 1 1.9761 -2.0341 0.0005 31 1 -0.3634 -0.0004 -1.0276 32 1 -0.3633 -0.8899 0.5142 33 1 -0.3634 0.8901 0.5136 34 1 4.7385 2.5045 -0.0008 35 1 6.8873 1.3244 0.0009 36 1 6.9658 -1.1294 0.0021 37 1 6.8938 -2.9610 0.0017 38 1 6.5901 -4.8443 2.1308 39 1 5.0108 -5.5998 1.7613 40 1 8.4844 -10.0298 0.9373 41 1 7.3300 -7.6116 -0.4755 42 1 8.6400 -6.9911 0.5651 43 1 8.3987 -5.8975 -2.2249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077951090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:00 Heat of formation + Delta-G solvation = 15.579585 kcal Electronic energy + Delta-G solvation = -27717.475417 eV Core-core repulsion = 23764.038883 eV Total energy + Delta-G solvation = -3953.436533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.40699 -39.80995 -38.00423 -37.23550 -35.12657 -34.18406 -33.27065 -31.90618 -31.55606 -30.39917 -28.36436 -27.88599 -27.05177 -24.70480 -23.46700 -22.53922 -21.17688 -20.83829 -20.51654 -20.14166 -18.17350 -17.76969 -17.05951 -16.85646 -16.42137 -15.83231 -15.76060 -15.27661 -14.88799 -14.65666 -14.34494 -14.09869 -14.07214 -13.47615 -13.30698 -13.24223 -12.97966 -12.73415 -12.54330 -12.26121 -12.21653 -12.04940 -11.79238 -11.55923 -11.30275 -10.94070 -10.84923 -10.83942 -10.45850 -10.20243 -9.98354 -9.88888 -9.88083 -9.38548 -8.97407 -8.69537 -8.57485 -8.35831 -6.95753 -5.80237 -3.14746 0.37138 1.26891 2.28556 2.74967 3.03525 3.16575 3.36903 3.41983 3.43614 3.73130 3.84133 4.36497 4.42506 4.55008 4.65711 4.66577 4.86829 4.96450 5.09681 5.11732 5.15623 5.21536 5.39193 5.47333 5.50439 5.51858 5.59917 5.71552 5.76011 5.99688 6.04951 6.07548 6.14513 6.19463 6.42785 6.54326 6.56205 6.80874 7.17791 7.26993 7.41462 7.56701 7.63197 7.69221 8.05614 8.12366 8.24498 9.10740 9.70970 10.34035 11.31823 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.018150 B = 0.002738 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.370386 B =10223.665478 C =11092.198063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.281 3.719 3 N -0.494 5.494 4 C 0.036 3.964 5 C -0.039 4.039 6 C -0.138 4.138 7 C -0.064 4.064 8 C -0.124 4.124 9 C 0.561 3.439 10 O -0.549 6.549 11 N -0.705 5.705 12 C 0.139 3.861 13 H 0.103 0.897 14 C 0.131 3.869 15 N -0.600 5.600 16 C -0.229 4.229 17 H 0.081 0.919 18 C -0.007 4.007 19 N -0.924 5.924 20 Si 0.916 3.084 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.153 3.847 25 C 0.069 3.931 26 H 0.058 0.942 27 O -0.563 6.563 28 C 0.101 3.899 29 N -0.581 5.581 30 H 0.434 0.566 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.134 0.866 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.398 0.602 38 H 0.024 0.976 39 H 0.050 0.950 40 H 0.254 0.746 41 H 0.061 0.939 42 H 0.050 0.950 43 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.514 20.553 -4.348 21.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.014 3.986 3 N -0.215 5.215 4 C -0.082 4.082 5 C -0.059 4.059 6 C -0.158 4.158 7 C -0.084 4.084 8 C -0.130 4.130 9 C 0.349 3.651 10 O -0.428 6.428 11 N -0.355 5.355 12 C 0.034 3.966 13 H 0.121 0.879 14 C 0.003 3.997 15 N -0.327 5.327 16 C -0.357 4.357 17 H 0.099 0.901 18 C -0.203 4.203 19 N -0.571 5.571 20 Si 0.746 3.254 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.028 3.972 25 C 0.009 3.991 26 H 0.076 0.924 27 O -0.368 6.368 28 C -0.013 4.013 29 N -0.192 5.192 30 H 0.276 0.724 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.152 0.848 37 H 0.233 0.767 38 H 0.042 0.958 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -7.045 20.921 -4.260 22.482 hybrid contribution 1.159 -2.083 0.543 2.445 sum -5.886 18.838 -3.717 20.083 Atomic orbital electron populations 1.20398 0.83993 1.04862 1.04384 1.23726 0.95898 0.81063 0.97868 1.70464 1.00484 1.27529 1.23027 1.19064 0.92396 0.89839 1.06884 1.20438 0.88991 0.99948 0.96520 1.20820 0.97672 0.93807 1.03497 1.21153 0.96358 0.94250 0.96660 1.18933 0.91031 0.92642 1.10395 1.18100 0.84013 0.86739 0.76287 1.90705 1.33360 1.67793 1.50937 1.45809 1.07857 1.07732 1.74118 1.22290 0.98096 0.77502 0.98695 0.87882 1.21834 0.97443 0.88070 0.92325 1.44298 1.47462 1.09210 1.31778 1.19085 1.20710 0.90026 1.05873 0.90138 1.24816 0.98947 0.97944 0.98631 1.69913 1.30218 1.25555 1.31460 0.86062 0.77156 0.82138 0.80073 1.21470 1.21599 1.20603 1.21858 0.95207 0.90627 0.89526 1.23442 0.95280 0.99267 0.81134 0.92383 1.86465 1.39974 1.89672 1.20702 1.18570 0.84939 0.94558 1.03238 1.43189 1.04603 1.10854 1.60588 0.72360 0.89215 0.89903 0.88466 0.84848 0.84507 0.84752 0.76699 0.95846 0.93154 0.93612 0.92061 0.93191 0.77561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.51 36.00 0.38 -0.12 16 2 C 0.28 3.14 8.08 -154.77 -1.25 1.89 16 3 N -0.49 -6.51 11.28 -8.23 -0.09 -6.60 16 4 C 0.04 0.48 7.22 -84.71 -0.61 -0.13 16 5 C -0.04 -0.41 10.09 -39.17 -0.40 -0.80 16 6 C -0.14 -1.20 9.99 -39.69 -0.40 -1.60 16 7 C -0.06 -0.64 9.53 -39.12 -0.37 -1.02 16 8 C -0.12 -1.65 5.88 -104.95 -0.62 -2.27 16 9 C 0.56 8.86 7.76 -12.47 -0.10 8.77 16 10 O -0.55 -10.25 15.03 5.28 0.08 -10.17 16 11 N -0.71 -10.47 5.18 -52.77 -0.27 -10.74 16 12 C 0.14 2.59 3.04 -65.79 -0.20 2.39 16 13 H 0.10 2.20 7.73 -51.92 -0.40 1.80 16 14 C 0.13 2.78 6.92 -2.53 -0.02 2.77 16 15 N -0.60 -15.23 3.40 -169.86 -0.58 -15.81 16 16 C -0.23 -6.37 10.28 -15.06 -0.15 -6.53 16 17 H 0.08 2.18 7.83 -52.48 -0.41 1.76 16 18 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 19 N -0.92 -26.57 10.33 55.49 0.57 -25.99 16 20 Si 0.92 21.97 29.55 -169.99 -5.02 16.94 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.15 3.58 5.16 -2.92 -0.02 3.56 16 25 C 0.07 1.23 3.95 -24.90 -0.10 1.14 16 26 H 0.06 0.90 8.00 -51.93 -0.42 0.48 16 27 O -0.56 -9.45 13.40 -35.23 -0.47 -9.92 16 28 C 0.10 1.40 6.88 -83.76 -0.58 0.82 16 29 N -0.58 -7.27 6.00 -7.80 -0.05 -7.31 16 30 H 0.43 5.22 7.72 -40.82 -0.32 4.91 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 35 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 36 H 0.13 1.00 6.39 -52.49 -0.34 0.67 16 37 H 0.40 4.62 6.54 -40.82 -0.27 4.35 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.06 1.62 7.31 -51.93 -0.38 1.24 16 42 H 0.05 1.25 7.51 -51.93 -0.39 0.86 16 43 H 0.38 4.74 9.12 45.56 0.42 5.15 16 LS Contribution 359.57 15.07 5.42 5.42 Total: -1.00 -35.48 359.57 -9.53 -45.01 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -4.59 Total: 10.61 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: -4.52 Total: 8.58 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: -0.42 Total: -66.47 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.39 Total: -20.09 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.48 -9.53 -45.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077951090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.588 kcal (2) G-P(sol) polarization free energy of solvation -35.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds