Wall clock time and date at job start Tue Mar 31 2020 05:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30086 * 124.97948 * 2 1 4 4 C 1.35853 * 109.54000 * 179.97438 * 3 2 1 5 5 C 1.39718 * 133.51240 * 179.97438 * 4 3 2 6 6 C 1.37846 * 120.10380 * 180.02562 * 5 4 3 7 7 C 1.38326 * 120.73060 * 359.97438 * 6 5 4 8 8 C 1.39396 * 120.28243 * 0.02562 * 7 6 5 9 9 C 1.47526 * 120.24934 * 179.97438 * 8 7 6 10 10 O 1.21593 * 119.99657 * 180.02562 * 9 8 7 11 11 N 1.34776 * 120.00053 * 359.97438 * 9 8 7 12 12 C 1.46496 * 120.00084 * 180.02562 * 11 9 8 13 13 H 1.09008 * 110.91253 * 37.45558 * 12 11 9 14 14 C 1.54908 * 111.00674 * 273.55347 * 12 11 9 15 15 N 1.47425 * 104.92961 * 204.86080 * 14 12 11 16 16 C 1.36938 * 125.65179 * 204.15650 * 15 14 12 17 17 H 1.08005 * 119.99558 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00146 * 180.02562 * 16 15 14 19 19 N 1.31620 * 120.00086 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99779 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47294 * 89.99594 * 20 18 16 22 22 H 1.48503 * 109.46797 * 209.99511 * 20 18 16 23 23 H 1.48500 * 109.47035 * 329.99310 * 20 18 16 24 24 C 1.47290 * 108.55742 * 24.15407 * 15 14 12 25 25 C 1.54325 * 107.30599 * 358.92448 * 24 15 14 26 26 H 1.08997 * 110.72163 * 96.18354 * 25 24 15 27 27 O 1.42898 * 110.87178 * 219.38109 * 25 24 15 28 28 C 1.40187 * 119.50149 * 0.24960 * 8 7 6 29 29 N 1.36123 * 124.97869 * 179.97438 * 2 1 3 30 30 H 0.97001 * 126.30922 * 0.03287 * 29 2 1 31 31 H 1.09002 * 109.47636 * 90.02286 * 1 2 3 32 32 H 1.09005 * 109.46866 * 210.01864 * 1 2 3 33 33 H 1.09000 * 109.47272 * 330.01305 * 1 2 3 34 34 H 1.07994 * 119.94916 * 359.97438 * 5 4 3 35 35 H 1.08003 * 119.62771 * 180.02562 * 6 5 4 36 36 H 1.07994 * 119.85648 * 180.02562 * 7 6 5 37 37 H 0.97000 * 119.99844 * 0.02562 * 11 9 8 38 38 H 1.09002 * 110.36632 * 323.75475 * 14 12 11 39 39 H 1.08995 * 110.36781 * 85.96712 * 14 12 11 40 40 H 0.96999 * 120.00175 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.85762 * 239.50064 * 24 15 14 42 42 H 1.08995 * 110.00297 * 118.43011 * 24 15 14 43 43 H 0.96700 * 114.00884 * 293.61196 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2527 1.0659 0.0000 4 6 3.5622 0.7042 0.0006 5 6 4.7592 1.4248 0.0004 6 6 5.9666 0.7597 0.0006 7 6 6.0121 -0.6228 0.0015 8 6 4.8321 -1.3649 0.0018 9 6 4.8814 -2.8393 0.0022 10 8 3.8492 -3.4821 0.0019 11 7 6.0704 -3.4738 0.0019 12 6 6.1194 -4.9380 0.0018 13 1 5.3244 -5.3538 -0.6173 14 6 6.0487 -5.4961 1.4451 15 7 6.6977 -6.8178 1.3734 16 6 6.4800 -7.8616 2.2328 17 1 5.7811 -7.7523 3.0489 18 6 7.1584 -9.0596 2.0556 19 7 8.0106 -9.1925 1.0613 20 14 6.8609 -10.4835 3.2275 21 1 5.7494 -11.3236 2.7136 22 1 8.0941 -11.3042 3.3323 23 1 6.5027 -9.9547 4.5681 24 6 7.6181 -6.8264 0.2235 25 6 7.5096 -5.4479 -0.4617 26 1 8.2997 -4.7818 -0.1154 27 8 7.5508 -5.5815 -1.8838 28 6 3.5981 -0.6996 -0.0043 29 7 2.2873 -1.1153 0.0005 30 1 1.9761 -2.0341 0.0005 31 1 -0.3634 -0.0004 -1.0276 32 1 -0.3633 -0.8899 0.5142 33 1 -0.3634 0.8901 0.5136 34 1 4.7385 2.5045 -0.0008 35 1 6.8873 1.3244 0.0009 36 1 6.9658 -1.1294 0.0021 37 1 6.8938 -2.9610 0.0017 38 1 6.5901 -4.8443 2.1308 39 1 5.0108 -5.5998 1.7613 40 1 8.4844 -10.0298 0.9373 41 1 7.3300 -7.6116 -0.4755 42 1 8.6400 -6.9911 0.5651 43 1 8.3987 -5.8975 -2.2249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077951090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:59 Heat of formation + Delta-G solvation = -12.382880 kcal Electronic energy + Delta-G solvation = -27718.687960 eV Core-core repulsion = 23764.038883 eV Total energy + Delta-G solvation = -3954.649077 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.26757 -41.10736 -39.47140 -38.14751 -36.69773 -35.68024 -34.19875 -33.68133 -32.28854 -31.46654 -30.05852 -28.73329 -28.59743 -26.49929 -24.63347 -23.38002 -22.49426 -22.07440 -21.88013 -21.51690 -19.38283 -18.80002 -18.70904 -18.18518 -17.46829 -17.32260 -16.71193 -16.55555 -16.15247 -15.92645 -15.68663 -15.61769 -15.17643 -14.75973 -14.49473 -14.31647 -14.20902 -13.87171 -13.81240 -13.50823 -13.21444 -13.18606 -13.04621 -12.84658 -12.78916 -12.75083 -12.52280 -12.11349 -11.90674 -11.75936 -11.57558 -11.48942 -11.11610 -10.85901 -10.79603 -10.31239 -9.42239 -9.23011 -8.99688 -7.91519 -5.28652 -0.49588 0.43612 1.36825 1.44357 1.46351 1.54842 1.89732 1.94146 2.00044 2.45465 2.83302 3.08965 3.11398 3.29206 3.46860 3.49277 3.75937 3.86465 3.92035 4.01855 4.13646 4.18883 4.21628 4.35609 4.41029 4.52684 4.55855 4.67094 4.78027 4.79468 4.91724 4.94551 5.02119 5.23936 5.32799 5.36362 5.36878 5.41192 5.41853 5.63882 5.79312 6.10570 6.30470 6.42489 6.76917 6.85617 7.01686 7.07264 7.65982 8.28700 9.18406 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.018150 B = 0.002738 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.370386 B =10223.665478 C =11092.198063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.279 3.721 3 N -0.520 5.520 4 C 0.011 3.989 5 C -0.040 4.040 6 C -0.126 4.126 7 C -0.050 4.050 8 C -0.150 4.150 9 C 0.559 3.441 10 O -0.587 6.587 11 N -0.691 5.691 12 C 0.155 3.845 13 H 0.071 0.929 14 C 0.132 3.868 15 N -0.622 5.622 16 C -0.249 4.249 17 H 0.080 0.920 18 C -0.060 4.060 19 N -0.947 5.947 20 Si 0.980 3.020 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.269 1.269 24 C 0.160 3.840 25 C 0.093 3.907 26 H 0.099 0.901 27 O -0.569 6.569 28 C 0.072 3.928 29 N -0.589 5.589 30 H 0.432 0.568 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.155 0.845 35 H 0.180 0.820 36 H 0.165 0.835 37 H 0.417 0.583 38 H 0.041 0.959 39 H 0.031 0.969 40 H 0.250 0.750 41 H 0.021 0.979 42 H 0.029 0.971 43 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.414 22.812 -4.204 23.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.012 3.988 3 N -0.241 5.241 4 C -0.106 4.106 5 C -0.059 4.059 6 C -0.145 4.145 7 C -0.070 4.070 8 C -0.156 4.156 9 C 0.349 3.651 10 O -0.468 6.468 11 N -0.342 5.342 12 C 0.049 3.951 13 H 0.089 0.911 14 C 0.005 3.995 15 N -0.350 5.350 16 C -0.378 4.378 17 H 0.098 0.902 18 C -0.253 4.253 19 N -0.595 5.595 20 Si 0.808 3.192 21 H -0.215 1.215 22 H -0.215 1.215 23 H -0.194 1.194 24 C 0.035 3.965 25 C 0.032 3.968 26 H 0.117 0.883 27 O -0.376 6.376 28 C -0.041 4.041 29 N -0.200 5.200 30 H 0.273 0.727 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.126 0.874 34 H 0.173 0.827 35 H 0.197 0.803 36 H 0.182 0.818 37 H 0.256 0.744 38 H 0.059 0.941 39 H 0.049 0.951 40 H 0.059 0.941 41 H 0.039 0.961 42 H 0.047 0.953 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -5.915 23.236 -4.126 24.329 hybrid contribution 0.797 -2.705 0.473 2.860 sum -5.118 20.531 -3.653 21.472 Atomic orbital electron populations 1.20603 0.81005 1.06074 1.05717 1.24561 0.97488 0.80324 0.96437 1.70464 1.00911 1.28352 1.24418 1.19545 0.93324 0.89921 1.07855 1.20890 0.88618 1.01171 0.95226 1.21284 0.98632 0.93340 1.01289 1.21589 0.96261 0.94999 0.94161 1.18863 0.92271 0.90924 1.13552 1.18571 0.83454 0.87921 0.75196 1.90683 1.34711 1.68865 1.52585 1.45507 1.08753 1.05945 1.74030 1.21743 0.97558 0.79651 0.96171 0.91116 1.21902 0.96142 0.86896 0.94520 1.44563 1.48277 1.10162 1.31950 1.19423 1.20693 0.91233 1.06431 0.90236 1.25638 0.99010 1.00304 1.00366 1.70112 1.30882 1.25781 1.32768 0.85060 0.76751 0.78846 0.78542 1.21491 1.21490 1.19401 1.21679 0.93417 0.92994 0.88443 1.23130 0.95805 0.96394 0.81434 0.88310 1.86433 1.41951 1.89632 1.19630 1.18936 0.85538 0.95307 1.04358 1.43318 1.04762 1.11048 1.60919 0.72657 0.87679 0.88419 0.87438 0.82725 0.80300 0.81762 0.74397 0.94082 0.95068 0.94062 0.96097 0.95277 0.75197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.51 71.23 0.75 -0.15 16 2 C 0.28 6.22 8.08 137.90 1.11 7.33 16 3 N -0.52 -13.55 11.28 -179.95 -2.03 -15.58 16 4 C 0.01 0.29 7.22 39.41 0.28 0.58 16 5 C -0.04 -0.72 10.09 22.53 0.23 -0.49 16 6 C -0.13 -1.68 9.99 22.20 0.22 -1.46 16 7 C -0.05 -0.84 9.53 22.57 0.22 -0.63 16 8 C -0.15 -3.83 5.88 -20.08 -0.12 -3.95 16 9 C 0.56 17.47 7.76 86.69 0.67 18.14 16 10 O -0.59 -22.64 15.03 -4.01 -0.06 -22.70 16 11 N -0.69 -19.40 5.18 -439.13 -2.27 -21.68 16 12 C 0.16 5.72 3.04 46.38 0.14 5.86 16 13 H 0.07 3.11 7.73 -2.38 -0.02 3.09 16 14 C 0.13 5.67 6.92 86.85 0.60 6.27 16 15 N -0.62 -32.23 3.40 -691.30 -2.35 -34.59 16 16 C -0.25 -14.16 10.28 84.03 0.86 -13.30 16 17 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 18 C -0.06 -3.38 5.49 84.86 0.47 -2.92 16 19 N -0.95 -55.75 10.33 21.65 0.22 -55.52 16 20 Si 0.98 45.68 29.55 68.60 2.03 47.71 16 21 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 22 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 24 C 0.16 7.61 5.16 86.68 0.45 8.05 16 25 C 0.09 3.19 3.95 31.78 0.13 3.32 16 26 H 0.10 2.68 8.00 -2.39 -0.02 2.67 16 27 O -0.57 -18.14 13.40 -148.98 -2.00 -20.13 16 28 C 0.07 2.00 6.88 39.26 0.27 2.27 16 29 N -0.59 -15.15 6.00 -178.60 -1.07 -16.23 16 30 H 0.43 11.02 7.72 -92.71 -0.72 10.30 16 31 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 35 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16 36 H 0.17 1.65 6.39 -2.91 -0.02 1.63 16 37 H 0.42 8.25 6.54 -92.71 -0.61 7.64 16 38 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 41 H 0.02 1.14 7.31 -2.38 -0.02 1.13 16 42 H 0.03 1.48 7.51 -2.39 -0.02 1.46 16 43 H 0.40 9.16 9.12 -74.06 -0.68 8.48 16 Total: -1.00 -81.11 359.57 -2.16 -83.27 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: -0.91 Total: 26.52 kcal Atomic # 6 Polarization: 22.65 SS G_CDS: 6.28 Total: 28.93 kcal Atomic # 7 Polarization: -136.09 SS G_CDS: -7.51 Total: -143.60 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -2.06 Total: -42.83 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -81.11 -2.16 -83.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077951090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.888 kcal (2) G-P(sol) polarization free energy of solvation -81.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds