Wall clock time and date at job start Tue Mar 31 2020 04:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34842 * 119.68203 * 2 1 4 4 C 1.40576 * 120.34532 * 180.02562 * 3 2 1 5 5 C 1.35884 * 119.72950 * 359.95259 * 4 3 2 6 6 C 1.41195 * 119.34764 * 0.06690 * 5 4 3 7 7 N 1.32237 * 132.04615 * 179.97438 * 6 5 4 8 8 C 1.34579 * 109.02122 * 179.97438 * 7 6 5 9 9 C 1.47592 * 125.91528 * 179.97438 * 8 7 6 10 10 O 1.21592 * 120.00008 * 180.02562 * 9 8 7 11 11 N 1.34778 * 120.00055 * 0.02886 * 9 8 7 12 12 C 1.46500 * 119.99895 * 180.02562 * 11 9 8 13 13 H 1.08995 * 110.88700 * 37.42256 * 12 11 9 14 14 C 1.54906 * 111.00040 * 273.53973 * 12 11 9 15 15 N 1.47427 * 104.83302 * 204.87855 * 14 12 11 16 16 C 1.36934 * 125.64760 * 204.09847 * 15 14 12 17 17 H 1.07997 * 120.00239 * 351.28229 * 16 15 14 18 18 C 1.38817 * 119.99822 * 171.29239 * 16 15 14 19 19 N 1.31620 * 120.00015 * 164.58539 * 18 16 15 20 20 Si 1.86799 * 119.99835 * 344.30666 * 18 16 15 21 21 H 1.48494 * 109.47004 * 185.79088 * 20 18 16 22 22 H 1.48506 * 109.47205 * 305.78771 * 20 18 16 23 23 H 1.48497 * 109.47199 * 65.79030 * 20 18 16 24 24 C 1.47018 * 108.70103 * 24.35915 * 15 14 12 25 25 C 1.54334 * 107.26557 * 358.58635 * 24 15 14 26 26 H 1.08997 * 110.51440 * 96.45485 * 25 24 15 27 27 O 1.42904 * 111.00135 * 219.60124 * 25 24 15 28 28 C 1.36573 * 108.16760 * 0.24470 * 8 7 6 29 29 N 1.36207 * 107.09138 * 359.61283 * 28 8 7 30 30 H 1.08992 * 109.47602 * 269.97811 * 1 2 3 31 31 H 1.08999 * 109.47022 * 29.98522 * 1 2 3 32 32 H 1.09006 * 109.47179 * 149.97546 * 1 2 3 33 33 H 1.08006 * 119.82678 * 359.97438 * 3 2 1 34 34 H 1.08005 * 120.13091 * 179.97438 * 4 3 2 35 35 H 1.08007 * 120.33070 * 179.97438 * 5 4 3 36 36 H 0.96998 * 120.00232 * 359.97438 * 11 9 8 37 37 H 1.09006 * 110.36654 * 86.04165 * 14 12 11 38 38 H 1.08995 * 110.37324 * 323.72281 * 14 12 11 39 39 H 0.97003 * 119.99843 * 355.00480 * 19 18 16 40 40 H 1.09003 * 109.88444 * 118.12847 * 24 15 14 41 41 H 1.09007 * 109.88372 * 239.29491 * 24 15 14 42 42 H 0.96700 * 113.99771 * 293.78209 * 27 25 24 43 43 H 1.07999 * 126.45734 * 179.72014 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1747 1.1715 0.0000 4 6 3.5804 1.1878 -0.0005 5 6 4.2678 0.0157 -0.0001 6 6 3.5563 -1.2039 -0.0005 7 7 3.9583 -2.4637 -0.0007 8 6 2.8794 -3.2683 -0.0005 9 6 2.9001 -4.7441 -0.0012 10 8 1.8556 -5.3667 -0.0015 11 7 4.0766 -5.4016 -0.0014 12 6 4.0970 -6.8665 -0.0026 13 1 3.2939 -7.2658 -0.6220 14 6 4.0151 -7.4240 1.4403 15 7 4.6390 -8.7576 1.3656 16 6 4.4027 -9.7984 2.2235 17 1 3.8192 -9.6390 3.1182 18 6 4.9133 -11.0585 1.9433 19 7 4.9557 -11.9760 2.8860 20 14 5.5331 -11.4544 0.2261 21 1 5.8930 -12.8930 0.1492 22 1 4.4682 -11.1569 -0.7653 23 1 6.7306 -10.6279 -0.0707 24 6 5.5616 -8.7830 0.2212 25 6 5.4767 -7.4038 -0.4663 26 1 6.2801 -6.7540 -0.1194 27 8 5.5153 -7.5373 -1.8885 28 6 1.7623 -2.4827 -0.0058 29 7 2.1838 -1.1875 -0.0004 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3633 0.8901 -0.5136 32 1 -0.3634 -0.8898 -0.5142 33 1 1.6267 2.1022 -0.0004 34 1 4.1117 2.1281 -0.0010 35 1 5.3479 0.0168 -0.0009 36 1 4.9098 -4.9050 -0.0015 37 1 2.9751 -7.5089 1.7557 38 1 4.5693 -6.7838 2.1265 39 1 4.6983 -11.7509 3.7938 40 1 6.5787 -8.9641 0.5689 41 1 5.2625 -9.5632 -0.4789 42 1 6.3568 -7.8700 -2.2296 43 1 0.7377 -2.8240 -0.0114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078151612.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:25 Heat of formation + Delta-G solvation = 48.748024 kcal Electronic energy + Delta-G solvation = -27534.942810 eV Core-core repulsion = 23582.944568 eV Total energy + Delta-G solvation = -3951.998242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.23059 -39.74144 -38.32791 -37.57253 -35.33356 -34.65780 -34.12166 -32.09937 -31.61717 -29.82218 -28.67186 -27.81184 -27.73618 -24.90912 -23.52917 -23.07754 -21.91207 -21.14368 -20.41134 -20.06170 -18.47056 -17.69682 -17.28273 -17.12963 -16.74051 -16.52009 -16.03485 -15.55423 -14.94917 -14.68727 -14.64032 -14.46622 -14.13360 -13.83072 -13.71844 -13.51620 -13.29043 -13.17247 -12.81676 -12.67033 -12.32318 -12.04659 -11.95356 -11.79941 -11.63166 -11.39017 -11.16167 -10.66964 -10.59313 -10.21423 -10.05398 -9.89949 -9.30001 -9.22164 -9.00414 -8.82751 -8.67500 -8.21948 -7.06549 -6.30458 -3.21727 0.22482 0.85127 1.86102 2.05975 2.99109 3.19329 3.38489 3.50101 3.53893 3.70239 3.72871 3.90920 4.23762 4.29297 4.31830 4.56731 4.63016 4.77948 4.84207 4.86786 4.95336 4.98703 5.07838 5.23660 5.26986 5.29634 5.36052 5.39544 5.49281 5.59195 5.71723 5.84316 5.89009 6.03692 6.09182 6.34393 6.39429 6.47032 6.58111 6.59976 6.77581 7.29976 7.62474 7.70378 7.82293 8.30720 8.34341 9.03992 9.53987 10.19277 11.20186 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.026560 B = 0.002498 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.978936 B =11207.368066 C =11570.533738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.089 3.911 3 C -0.145 4.145 4 C -0.098 4.098 5 C -0.081 4.081 6 C 0.228 3.772 7 N -0.464 5.464 8 C 0.014 3.986 9 C 0.600 3.400 10 O -0.532 6.532 11 N -0.697 5.697 12 C 0.137 3.863 13 H 0.108 0.892 14 C 0.131 3.869 15 N -0.606 5.606 16 C -0.321 4.321 17 H 0.082 0.918 18 C -0.022 4.022 19 N -0.926 5.926 20 Si 1.071 2.929 21 H -0.301 1.301 22 H -0.294 1.294 23 H -0.289 1.289 24 C 0.084 3.916 25 C 0.087 3.913 26 H 0.071 0.929 27 O -0.558 6.558 28 C -0.019 4.019 29 N -0.362 5.362 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.151 0.849 34 H 0.144 0.856 35 H 0.153 0.847 36 H 0.407 0.593 37 H 0.059 0.941 38 H 0.032 0.968 39 H 0.262 0.738 40 H 0.052 0.948 41 H 0.044 0.956 42 H 0.378 0.622 43 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.584 31.191 -8.454 32.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.013 4.013 3 C -0.165 4.165 4 C -0.122 4.122 5 C -0.101 4.101 6 C -0.017 4.017 7 N -0.186 5.186 8 C -0.119 4.119 9 C 0.385 3.615 10 O -0.408 6.408 11 N -0.347 5.347 12 C 0.032 3.968 13 H 0.125 0.875 14 C 0.003 3.997 15 N -0.335 5.335 16 C -0.448 4.448 17 H 0.100 0.900 18 C -0.221 4.221 19 N -0.568 5.568 20 Si 0.905 3.095 21 H -0.229 1.229 22 H -0.223 1.223 23 H -0.217 1.217 24 C -0.042 4.042 25 C 0.027 3.973 26 H 0.089 0.911 27 O -0.363 6.363 28 C -0.154 4.154 29 N -0.035 5.035 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.169 0.831 34 H 0.162 0.838 35 H 0.171 0.829 36 H 0.243 0.757 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.225 0.775 43 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -3.599 29.300 -9.263 30.939 hybrid contribution -0.439 1.591 0.950 1.904 sum -4.038 30.890 -8.313 32.243 Atomic orbital electron populations 1.20975 0.87683 1.04817 1.04211 1.20361 0.95339 0.83602 1.02024 1.20649 0.94811 0.96516 1.04542 1.21044 0.93666 0.98446 0.99006 1.20329 1.00861 0.87502 1.01395 1.20981 0.79997 0.94511 1.06230 1.70841 1.28673 0.98055 1.20986 1.20652 0.89160 0.94419 1.07636 1.16842 0.84169 0.83954 0.76559 1.90832 1.32062 1.67537 1.50370 1.45654 1.08490 1.07002 1.73540 1.22332 0.97634 0.78028 0.98801 0.87455 1.21931 0.98122 0.87245 0.92381 1.44618 1.46819 1.10229 1.31868 1.20198 1.34411 0.88206 1.01987 0.90050 1.25848 0.99139 0.91375 1.05768 1.70892 1.48503 1.35356 1.02014 0.83838 0.76095 0.74173 0.75423 1.22898 1.22310 1.21697 1.22689 0.95571 0.94956 0.90957 1.23055 0.96722 0.96599 0.80926 0.91101 1.86524 1.40779 1.88768 1.20222 1.22558 1.01334 0.80147 1.11368 1.42731 1.08897 1.05615 1.46230 0.89462 0.89005 0.90369 0.83122 0.83793 0.82888 0.75722 0.92306 0.95038 0.92791 0.93022 0.93905 0.77475 0.78782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.50 9.84 36.00 0.35 -0.14 16 2 C 0.09 0.63 6.78 -81.64 -0.55 0.08 16 3 C -0.14 -0.75 9.58 -39.90 -0.38 -1.13 16 4 C -0.10 -0.53 10.06 -39.54 -0.40 -0.93 16 5 C -0.08 -0.65 10.11 -39.30 -0.40 -1.04 16 6 C 0.23 2.65 7.80 -156.04 -1.22 1.44 16 7 N -0.46 -6.50 11.01 -9.35 -0.10 -6.60 16 8 C 0.01 0.21 6.94 -83.45 -0.58 -0.37 16 9 C 0.60 10.27 7.82 -12.44 -0.10 10.18 16 10 O -0.53 -10.56 16.62 5.28 0.09 -10.47 16 11 N -0.70 -11.47 5.23 -52.75 -0.28 -11.74 16 12 C 0.14 2.62 3.04 -65.78 -0.20 2.42 16 13 H 0.11 2.29 7.73 -51.93 -0.40 1.89 16 14 C 0.13 2.85 6.92 -2.53 -0.02 2.83 16 15 N -0.61 -15.46 3.33 -170.06 -0.57 -16.02 16 16 C -0.32 -9.48 10.56 -15.06 -0.16 -9.64 16 17 H 0.08 2.53 8.06 -52.49 -0.42 2.10 16 18 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16 19 N -0.93 -29.62 13.70 55.49 0.76 -28.85 16 20 Si 1.07 27.33 24.54 -169.99 -4.17 23.16 16 21 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 22 H -0.29 -7.41 6.83 56.52 0.39 -7.03 16 23 H -0.29 -6.58 5.44 56.52 0.31 -6.27 16 24 C 0.08 1.86 4.41 -3.06 -0.01 1.84 16 25 C 0.09 1.54 3.94 -24.89 -0.10 1.44 16 26 H 0.07 1.08 8.00 -51.93 -0.42 0.66 16 27 O -0.56 -9.06 13.40 -35.23 -0.47 -9.53 16 28 C -0.02 -0.23 10.78 -16.21 -0.17 -0.40 16 29 N -0.36 -3.79 2.93 -58.17 -0.17 -3.96 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.18 8.07 -51.93 -0.42 -0.24 16 32 H 0.08 0.36 7.45 -51.93 -0.39 -0.03 16 33 H 0.15 0.30 8.06 -52.48 -0.42 -0.12 16 34 H 0.14 0.34 8.06 -52.48 -0.42 -0.08 16 35 H 0.15 0.95 8.06 -52.48 -0.42 0.52 16 36 H 0.41 5.93 8.21 -40.82 -0.34 5.59 16 37 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.26 8.28 8.73 -40.82 -0.36 7.92 16 40 H 0.05 1.15 6.82 -51.93 -0.35 0.79 16 41 H 0.04 1.02 3.65 -51.93 -0.19 0.83 16 42 H 0.38 4.34 9.12 45.56 0.42 4.75 16 43 H 0.20 1.94 7.76 -52.49 -0.41 1.53 16 LS Contribution 356.43 15.07 5.37 5.37 Total: -1.00 -38.08 356.43 -8.28 -46.37 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -4.71 Total: 6.47 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -4.03 Total: 5.82 kcal Atomic # 7 Polarization: -66.83 SS G_CDS: -0.36 Total: -67.18 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.38 Total: -20.01 kcal Atomic # 14 Polarization: 27.33 SS G_CDS: -4.17 Total: 23.16 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -38.08 -8.28 -46.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078151612.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.114 kcal (2) G-P(sol) polarization free energy of solvation -38.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds