Wall clock time and date at job start Tue Mar 31 2020 04:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86804 * 120.00024 * 2 1 4 4 H 1.48498 * 109.47059 * 239.99855 * 3 2 1 5 5 H 1.48504 * 109.47035 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47226 * 119.99818 * 3 2 1 7 7 C 1.38810 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00136 * 197.46848 * 7 2 1 9 9 N 1.36934 * 119.99908 * 17.46550 * 7 2 1 10 10 C 1.46933 * 120.56672 * 27.97074 * 9 7 2 11 11 C 1.53340 * 108.67831 * 125.60848 * 10 9 7 12 12 C 1.52145 * 109.43360 * 53.39562 * 11 10 9 13 13 C 1.54096 * 110.62738 * 64.29746 * 12 11 10 14 14 N 1.47537 * 104.69193 * 81.40484 * 13 12 11 15 15 C 1.34770 * 125.53835 * 203.83058 * 14 13 12 16 16 O 1.21282 * 120.00456 * 180.02562 * 15 14 13 17 17 C 1.50709 * 120.00201 * 0.02645 * 15 14 13 18 18 F 1.39896 * 109.47134 * 185.00101 * 17 15 14 19 19 F 1.39903 * 109.46805 * 304.99560 * 17 15 14 20 20 C 1.46759 * 108.91988 * 23.83240 * 14 13 12 21 21 H 1.09007 * 111.72154 * 235.54912 * 20 14 13 22 22 C 1.53821 * 109.94984 * 110.80623 * 20 14 13 23 23 O 1.42920 * 107.16610 * 272.06329 * 22 20 14 24 24 C 1.42771 * 110.68899 * 342.03297 * 23 22 20 25 25 C 1.54381 * 110.45870 * 177.26458 * 12 11 10 26 26 H 1.08998 * 113.35133 * 39.47428 * 25 12 11 27 27 C 1.52102 * 111.54979 * 300.64028 * 12 11 10 28 28 C 1.46922 * 120.56516 * 207.94858 * 9 7 2 29 29 H 0.97002 * 120.00557 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.59851 * 5.85642 * 10 9 7 31 31 H 1.08994 * 109.73993 * 245.45092 * 10 9 7 32 32 H 1.09004 * 109.48012 * 173.38536 * 11 10 9 33 33 H 1.08996 * 109.48302 * 293.40275 * 11 10 9 34 34 H 1.09008 * 110.39376 * 200.20486 * 13 12 11 35 35 H 1.09003 * 110.39437 * 322.59704 * 13 12 11 36 36 H 1.08999 * 109.47016 * 64.99796 * 17 15 14 37 37 H 1.08995 * 109.90242 * 31.44925 * 22 20 14 38 38 H 1.09000 * 109.89759 * 152.67872 * 22 20 14 39 39 H 1.08996 * 109.68340 * 121.60445 * 24 23 22 40 40 H 1.09002 * 109.68876 * 242.13566 * 24 23 22 41 41 H 1.09001 * 109.46345 * 299.29820 * 27 12 11 42 42 H 1.08994 * 109.47822 * 179.29499 * 27 12 11 43 43 H 1.09006 * 109.59905 * 354.09719 * 28 9 7 44 44 H 1.09002 * 109.59867 * 114.39901 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0529 -1.2235 0.2813 9 7 1.3729 -2.3608 -0.3549 10 6 0.2340 -2.3328 -1.2828 11 6 0.5231 -3.2914 -2.4442 12 6 0.8756 -4.6644 -1.8916 13 6 -0.3273 -5.2750 -1.1468 14 7 -1.1755 -5.8458 -2.2105 15 6 -2.5008 -6.0729 -2.1185 16 8 -3.1014 -6.5485 -3.0587 17 6 -3.2365 -5.7360 -0.8471 18 9 -4.5648 -6.1628 -0.9499 19 9 -2.6220 -6.3803 0.2320 20 6 -0.3415 -6.1260 -3.3852 21 1 -0.7238 -5.6320 -4.2785 22 6 -0.2098 -7.6455 -3.5848 23 8 0.9100 -8.0774 -2.8088 24 6 1.7470 -6.9709 -2.4719 25 6 1.1048 -5.6670 -3.0430 26 1 1.6379 -5.2367 -3.8908 27 6 2.0951 -4.6053 -0.9844 28 6 1.8166 -3.6533 0.1848 29 1 -0.4851 0.8400 -0.0004 30 1 0.1007 -1.3217 -1.6677 31 1 -0.6711 -2.6490 -0.7643 32 1 -0.3598 -3.3706 -3.0786 33 1 1.3590 -2.9102 -3.0307 34 1 0.0054 -6.0580 -0.4653 35 1 -0.8695 -4.5017 -0.6025 36 1 -3.2125 -4.6579 -0.6882 37 1 -1.1150 -8.1450 -3.2398 38 1 -0.0391 -7.8678 -4.6382 39 1 1.8338 -6.8929 -1.3882 40 1 2.7351 -7.1110 -2.9102 41 1 2.9525 -4.2430 -1.5517 42 1 2.3096 -5.6018 -0.5985 43 1 2.7274 -3.5132 0.7670 44 1 1.0365 -4.0709 0.8214 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079215519.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:59 Heat of formation + Delta-G solvation = -139.889125 kcal Electronic energy + Delta-G solvation = -31082.948929 eV Core-core repulsion = 26672.081580 eV Total energy + Delta-G solvation = -4410.867349 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.154 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.22885 -47.25219 -41.55291 -38.90676 -37.85603 -35.63225 -33.54456 -31.59389 -30.53375 -30.42705 -28.57858 -27.93559 -26.37015 -24.77113 -23.65262 -22.37714 -21.96299 -20.60274 -19.92691 -18.55395 -18.38643 -17.74661 -17.19678 -17.03735 -16.53876 -16.00940 -15.73764 -15.19517 -15.05138 -14.81803 -14.38165 -14.08221 -13.91334 -13.80126 -13.57521 -13.49183 -13.35281 -13.22283 -13.07254 -12.57161 -12.36908 -12.10326 -11.99656 -11.97371 -11.75753 -11.41093 -11.31780 -11.06454 -10.80791 -10.67195 -10.41652 -10.37688 -10.08529 -9.99539 -9.73642 -9.59570 -9.44593 -8.91127 -8.57189 -6.80487 -5.91086 -3.33355 1.99420 2.31791 3.31217 3.37894 3.38613 3.56026 3.77066 3.85339 4.09712 4.34245 4.40935 4.45969 4.58277 4.69086 4.76644 4.91609 5.01979 5.12162 5.24096 5.28257 5.36371 5.45642 5.56648 5.60864 5.64224 5.72050 5.76800 5.84776 5.90243 6.02562 6.09913 6.27827 6.41373 6.43683 6.49041 6.64530 6.77183 6.91728 7.09841 7.15760 7.47394 7.59468 7.68974 8.32768 9.08973 9.72115 10.27366 11.17541 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014079 B = 0.004488 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.261186 B = 6237.591283 C = 7412.558572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.005 3.995 3 Si 0.902 3.098 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.255 4.255 8 H 0.066 0.934 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.129 4.129 12 C -0.045 4.045 13 C 0.098 3.902 14 N -0.590 5.590 15 C 0.491 3.509 16 O -0.511 6.511 17 C 0.260 3.740 18 F -0.177 7.177 19 F -0.185 7.185 20 C 0.109 3.891 21 H 0.104 0.896 22 C 0.049 3.951 23 O -0.379 6.379 24 C 0.051 3.949 25 C -0.121 4.121 26 H 0.115 0.885 27 C -0.125 4.125 28 C 0.143 3.857 29 H 0.255 0.745 30 H 0.091 0.909 31 H 0.016 0.984 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.140 0.860 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.161 -11.589 -4.854 12.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.194 4.194 3 Si 0.732 3.268 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.385 4.385 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.046 3.954 11 C -0.168 4.168 12 C -0.046 4.046 13 C -0.023 4.023 14 N -0.323 5.323 15 C 0.275 3.725 16 O -0.386 6.386 17 C 0.203 3.797 18 F -0.158 7.158 19 F -0.166 7.166 20 C 0.006 3.994 21 H 0.122 0.878 22 C -0.029 4.029 23 O -0.298 6.298 24 C -0.025 4.025 25 C -0.140 4.140 26 H 0.133 0.867 27 C -0.164 4.164 28 C 0.017 3.983 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.157 0.843 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -0.670 -11.932 -5.235 13.047 hybrid contribution 0.254 1.101 -0.002 1.130 sum -0.416 -10.831 -5.238 12.038 Atomic orbital electron populations 1.69990 1.05293 1.25795 1.53649 1.25016 0.95255 0.98440 1.00686 0.86383 0.78966 0.83319 0.78177 1.21033 1.21633 1.20829 1.19134 0.92783 0.84816 1.41723 0.91648 1.44022 1.36187 1.01444 1.49546 1.20814 0.88579 0.98520 0.87520 1.22071 1.00473 0.93945 1.00306 1.21004 0.94805 0.95053 0.93698 1.22782 0.91935 0.97874 0.89716 1.48388 1.06125 1.61287 1.16531 1.20679 0.81801 0.80117 0.89939 1.90789 1.66173 1.42973 1.38667 1.21573 0.76418 0.98356 0.83327 1.93046 1.34521 1.92174 1.96094 1.93061 1.82620 1.84318 1.56594 1.22888 0.91068 0.95855 0.89623 0.87834 1.23344 0.90110 0.93350 0.96066 1.88164 1.36815 1.31929 1.72908 1.23703 0.93855 0.83986 1.00960 1.24076 0.93317 0.96634 0.99980 0.86728 1.22040 0.96123 0.99815 0.98458 1.20953 0.97958 0.86892 0.92515 0.93492 0.89134 0.96596 0.93205 0.91797 0.90316 0.88874 0.84262 0.89678 0.91242 0.89814 0.91263 0.91245 0.92010 0.92419 0.96271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.43 11.20 55.49 0.62 -23.81 16 2 C 0.00 0.12 4.90 -17.43 -0.09 0.04 16 3 Si 0.90 20.52 29.59 -169.99 -5.03 15.49 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.26 -6.41 9.57 -15.06 -0.14 -6.56 16 8 H 0.07 1.63 7.89 -52.49 -0.41 1.21 16 9 N -0.59 -12.96 2.98 -172.14 -0.51 -13.47 16 10 C 0.17 3.53 5.01 -3.63 -0.02 3.51 16 11 C -0.13 -2.04 4.89 -26.99 -0.13 -2.17 16 12 C -0.04 -0.59 0.37 -154.11 -0.06 -0.65 16 13 C 0.10 1.30 3.52 -2.90 -0.01 1.29 16 14 N -0.59 -7.81 2.98 -162.39 -0.48 -8.29 16 15 C 0.49 7.03 7.30 -10.98 -0.08 6.95 16 16 O -0.51 -8.64 16.34 5.56 0.09 -8.55 16 17 C 0.26 3.30 4.91 36.01 0.18 3.48 16 18 F -0.18 -2.50 16.95 2.25 0.04 -2.46 16 19 F -0.18 -2.45 16.46 2.25 0.04 -2.42 16 20 C 0.11 1.32 3.29 -66.00 -0.22 1.10 16 21 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 22 C 0.05 0.60 7.34 37.58 0.28 0.87 16 23 O -0.38 -5.02 11.27 -35.23 -0.40 -5.42 16 24 C 0.05 0.57 6.55 38.86 0.25 0.83 16 25 C -0.12 -1.36 3.53 -86.84 -0.31 -1.67 16 26 H 0.11 1.15 8.13 -51.93 -0.42 0.73 16 27 C -0.13 -1.72 4.46 -27.02 -0.12 -1.84 16 28 C 0.14 2.54 6.24 -3.64 -0.02 2.52 16 29 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 30 H 0.09 2.19 6.01 -51.93 -0.31 1.87 16 31 H 0.02 0.34 6.58 -51.93 -0.34 0.00 16 32 H 0.05 0.75 7.82 -51.93 -0.41 0.34 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.08 1.02 7.44 -51.92 -0.39 0.63 16 35 H 0.09 1.33 5.67 -51.93 -0.29 1.04 16 36 H 0.14 1.41 8.05 -51.93 -0.42 0.99 16 37 H 0.09 1.17 7.22 -51.93 -0.37 0.80 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.94 4.79 -51.93 -0.25 0.69 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.72 5.65 -51.93 -0.29 0.43 16 43 H 0.06 1.03 7.93 -51.93 -0.41 0.62 16 44 H 0.02 0.34 7.65 -51.93 -0.40 -0.05 16 LS Contribution 340.80 15.07 5.14 5.14 Total: -1.00 -29.17 340.80 -6.96 -36.12 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -5.97 Total: -0.04 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -0.49 Total: 7.71 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: -0.38 Total: -45.57 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.31 Total: -13.97 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.08 Total: -4.88 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.17 -6.96 -36.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079215519.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.766 kcal (2) G-P(sol) polarization free energy of solvation -29.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds