Wall clock time and date at job start Tue Mar 31 2020 06:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 113.99684 * 2 1 4 4 H 1.08996 * 110.63915 * 26.86594 * 3 2 1 5 5 C 1.54319 * 110.87056 * 263.60869 * 3 2 1 6 6 N 1.47028 * 107.26947 * 219.37186 * 5 3 2 7 7 C 1.36936 * 125.64452 * 178.89615 * 6 5 3 8 8 H 1.08002 * 119.99676 * 180.02562 * 7 6 5 9 9 C 1.38811 * 120.00535 * 0.03224 * 7 6 5 10 10 N 1.31622 * 119.99558 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00416 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46908 * 59.99552 * 11 9 7 13 13 H 1.48499 * 109.47301 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47203 * 299.99972 * 11 9 7 15 15 C 1.47419 * 108.70371 * 358.94679 * 6 5 3 16 16 C 1.54912 * 104.83391 * 24.12534 * 15 6 5 17 17 H 1.08995 * 111.03512 * 81.08074 * 16 15 6 18 18 N 1.46498 * 111.00363 * 204.91815 * 16 15 6 19 19 C 1.34777 * 119.99828 * 266.91713 * 18 16 15 20 20 O 1.21653 * 119.99988 * 0.28054 * 19 18 16 21 21 C 1.47072 * 120.00187 * 180.27717 * 19 18 16 22 22 C 1.35906 * 125.42184 * 179.69704 * 21 19 18 23 23 C 1.41438 * 107.66991 * 179.90401 * 22 21 19 24 24 C 1.39835 * 134.34579 * 180.02562 * 23 22 21 25 25 N 1.31563 * 120.04070 * 180.32984 * 24 23 22 26 26 C 1.32370 * 122.31803 * 0.02562 * 25 24 23 27 27 C 1.36638 * 121.64556 * 359.97438 * 26 25 24 28 28 C 1.39427 * 119.01421 * 0.02562 * 27 26 25 29 29 N 1.36879 * 134.32921 * 179.97438 * 28 27 26 30 30 H 0.97006 * 125.58663 * 0.02562 * 29 28 27 31 31 H 1.08992 * 109.47285 * 59.99890 * 1 2 3 32 32 H 1.08997 * 109.46790 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46909 * 299.99213 * 1 2 3 34 34 H 1.08999 * 109.88838 * 338.79519 * 5 3 2 35 35 H 1.09006 * 109.87996 * 99.80927 * 5 3 2 36 36 H 0.97001 * 119.99905 * 180.02562 * 10 9 7 37 37 H 1.09002 * 110.36625 * 265.29189 * 15 6 5 38 38 H 1.08996 * 110.36984 * 142.96546 * 15 6 5 39 39 H 0.97001 * 120.00384 * 87.20160 * 18 16 15 40 40 H 1.07996 * 126.16776 * 0.03968 * 22 21 19 41 41 H 1.08000 * 119.98468 * 0.31682 * 24 23 22 42 42 H 1.08000 * 119.17603 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.49295 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3352 2.0266 0.4609 5 6 2.3804 1.7425 -1.4330 6 7 3.6668 2.4502 -1.3549 7 6 4.3523 2.9792 -2.4157 8 1 5.2941 3.4822 -2.2533 9 6 3.8367 2.8690 -3.6998 10 7 2.6892 2.2556 -3.8978 11 14 4.7715 3.5912 -5.1469 12 1 6.1087 2.9521 -5.2410 13 1 4.0145 3.3412 -6.3997 14 1 4.9348 5.0541 -4.9502 15 6 4.0970 2.4948 0.0544 16 6 3.3816 1.2958 0.7256 17 1 3.9169 0.3653 0.5370 18 7 3.2164 1.5210 2.1637 19 6 4.1438 1.0639 3.0283 20 8 5.1206 0.4687 2.6141 21 6 3.9749 1.2846 4.4725 22 6 4.8350 0.8680 5.4389 23 6 4.3114 1.2803 6.6864 24 6 4.7318 1.1511 8.0138 25 7 4.0023 1.6517 8.9874 26 6 2.8624 2.2862 8.7633 27 6 2.3748 2.4592 7.4987 28 6 3.0985 1.9530 6.4198 29 7 2.9133 1.9443 5.0636 30 1 2.1605 2.3365 4.5941 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8900 34 1 2.4775 0.8666 -2.0743 35 1 1.6123 2.4076 -1.8278 36 1 2.3290 2.1782 -4.7951 37 1 3.7839 3.4307 0.5172 38 1 5.1785 2.3790 0.1248 39 1 2.4376 1.9955 2.4941 40 1 5.7538 0.3225 5.2823 41 1 5.6559 0.6398 8.2399 42 1 2.3038 2.6769 9.6010 43 1 1.4423 2.9796 7.3373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081853172.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:01 Heat of formation + Delta-G solvation = 27.440121 kcal Electronic energy + Delta-G solvation = -27524.301079 eV Core-core repulsion = 23571.378857 eV Total energy + Delta-G solvation = -3952.922222 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.13768 -39.83977 -38.50040 -37.84612 -36.02575 -34.32373 -32.71703 -31.98271 -30.95719 -29.66077 -28.84862 -27.36789 -26.21920 -25.04915 -23.94659 -23.13047 -21.93823 -20.71788 -20.60728 -20.12926 -19.02146 -17.90199 -17.11674 -16.59144 -15.96749 -15.79795 -15.59344 -15.50139 -14.98726 -14.71384 -14.52819 -14.51961 -14.31405 -14.13185 -13.86003 -13.43366 -13.32218 -13.04207 -12.82820 -12.37150 -11.99447 -11.82200 -11.71334 -11.34432 -11.09501 -10.87509 -10.82688 -10.42253 -10.35221 -10.17235 -10.08606 -9.86804 -9.85057 -9.33221 -9.16931 -8.92141 -8.67467 -8.27665 -6.97167 -5.79753 -3.15377 0.33286 1.20840 1.78247 2.44193 2.94898 3.17850 3.37551 3.41886 3.42938 3.62772 4.01413 4.19419 4.22543 4.42623 4.50438 4.62035 4.76925 4.95230 4.99606 5.12112 5.24176 5.40521 5.42312 5.46010 5.52470 5.52632 5.59236 5.67287 5.73586 5.81124 5.90446 5.99133 6.03407 6.21077 6.31310 6.46383 6.51161 6.68313 6.87826 7.14793 7.36474 7.41553 7.62637 7.77118 7.77597 8.03823 8.13749 9.10555 9.70553 10.32666 11.31628 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.020314 B = 0.002540 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.020129 B =11018.902613 C =11714.887869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.377 6.377 3 C 0.055 3.945 4 H 0.061 0.939 5 C 0.165 3.835 6 N -0.599 5.599 7 C -0.231 4.231 8 H 0.081 0.919 9 C -0.006 4.006 10 N -0.923 5.923 11 Si 0.916 3.084 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.284 1.284 15 C 0.131 3.869 16 C 0.131 3.869 17 H 0.112 0.888 18 N -0.711 5.711 19 C 0.582 3.418 20 O -0.512 6.512 21 C 0.025 3.975 22 C -0.092 4.092 23 C -0.174 4.174 24 C 0.178 3.822 25 N -0.508 5.508 26 C 0.103 3.897 27 C -0.181 4.181 28 C 0.139 3.861 29 N -0.570 5.570 30 H 0.420 0.580 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.032 0.968 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.254 0.746 37 H 0.023 0.977 38 H 0.053 0.947 39 H 0.391 0.609 40 H 0.164 0.836 41 H 0.162 0.838 42 H 0.157 0.843 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.049 -0.766 21.442 22.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.295 6.295 3 C -0.004 4.004 4 H 0.079 0.921 5 C 0.040 3.960 6 N -0.327 5.327 7 C -0.359 4.359 8 H 0.099 0.901 9 C -0.202 4.202 10 N -0.570 5.570 11 Si 0.746 3.254 12 H -0.210 1.210 13 H -0.215 1.215 14 H -0.211 1.211 15 C 0.003 3.997 16 C 0.026 3.974 17 H 0.130 0.870 18 N -0.361 5.361 19 C 0.367 3.633 20 O -0.387 6.387 21 C -0.084 4.084 22 C -0.119 4.119 23 C -0.181 4.181 24 C 0.010 3.990 25 N -0.218 5.218 26 C -0.044 4.044 27 C -0.204 4.204 28 C 0.021 3.979 29 N -0.174 5.174 30 H 0.259 0.741 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.224 0.776 40 H 0.181 0.819 41 H 0.179 0.821 42 H 0.174 0.826 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.154 -1.363 21.604 22.041 hybrid contribution -1.093 1.220 -1.809 2.440 sum -5.247 -0.143 19.795 20.479 Atomic orbital electron populations 1.22715 0.81664 1.02176 0.99698 1.87923 1.19124 1.27424 1.95032 1.23860 0.92753 0.84128 0.99628 0.92056 1.21561 0.88309 0.97321 0.88833 1.44238 1.21438 1.66389 1.00635 1.19027 1.02482 1.29708 0.84691 0.90119 1.24828 0.97408 1.00556 0.97444 1.69921 1.19228 1.47023 1.20813 0.86141 0.78911 0.78692 0.81669 1.20962 1.21543 1.21101 1.21816 0.97927 0.93552 0.86361 1.22534 0.96822 1.01561 0.76474 0.86994 1.45855 1.24476 1.58043 1.07686 1.17114 0.83443 0.79478 0.83287 1.90892 1.29305 1.40904 1.77593 1.20439 0.91185 1.03548 0.93268 1.20901 1.00303 1.01867 0.88849 1.19241 0.97254 1.05987 0.95650 1.22540 0.97634 0.92958 0.85869 1.67677 1.06841 1.11517 1.35721 1.22095 0.92303 0.94928 0.95105 1.20799 1.02181 1.06032 0.91391 1.18378 0.96358 0.99117 0.84007 1.41893 1.21626 1.49133 1.04796 0.74107 0.93525 0.90125 0.94991 0.91806 0.93252 0.93530 0.95981 0.92920 0.77621 0.81886 0.82058 0.82587 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.85 101.05 1.10 1.55 16 2 O -0.38 -6.62 10.44 -35.23 -0.37 -6.99 16 3 C 0.06 0.99 3.09 -24.90 -0.08 0.91 16 4 H 0.06 0.94 7.68 -51.93 -0.40 0.54 16 5 C 0.17 3.87 5.15 -3.06 -0.02 3.86 16 6 N -0.60 -14.97 3.39 -170.07 -0.58 -15.55 16 7 C -0.23 -6.35 10.28 -15.06 -0.15 -6.50 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 10 N -0.92 -26.51 10.31 55.49 0.57 -25.94 16 11 Si 0.92 21.83 29.55 -169.99 -5.02 16.81 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 C 0.13 2.68 6.93 -2.53 -0.02 2.66 16 16 C 0.13 2.32 3.15 -65.78 -0.21 2.11 16 17 H 0.11 2.28 7.53 -51.93 -0.39 1.89 16 18 N -0.71 -9.61 5.19 -52.91 -0.27 -9.88 16 19 C 0.58 8.40 7.80 -12.68 -0.10 8.30 16 20 O -0.51 -9.35 16.48 5.23 0.09 -9.27 16 21 C 0.02 0.29 6.97 -82.22 -0.57 -0.29 16 22 C -0.09 -1.02 10.53 -39.20 -0.41 -1.43 16 23 C -0.17 -1.81 6.21 -106.95 -0.66 -2.48 16 24 C 0.18 1.68 11.29 -17.07 -0.19 1.48 16 25 N -0.51 -5.15 10.33 -13.18 -0.14 -5.29 16 26 C 0.10 0.86 11.09 -17.90 -0.20 0.66 16 27 C -0.18 -1.43 10.09 -39.72 -0.40 -1.83 16 28 C 0.14 1.34 7.32 -84.03 -0.62 0.73 16 29 N -0.57 -5.09 6.05 -7.31 -0.04 -5.13 16 30 H 0.42 2.57 8.12 -40.82 -0.33 2.24 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.03 0.35 8.11 -51.93 -0.42 -0.07 16 34 H 0.06 1.72 7.30 -51.93 -0.38 1.34 16 35 H 0.05 1.25 7.51 -51.93 -0.39 0.86 16 36 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.39 3.95 7.62 -40.82 -0.31 3.64 16 40 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 364.11 15.07 5.49 5.49 Total: -1.00 -33.95 364.11 -8.46 -42.41 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -5.55 Total: 3.86 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: -2.63 Total: 9.48 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: -0.46 Total: -61.79 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.28 Total: -16.25 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.95 -8.46 -42.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081853172.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.852 kcal (2) G-P(sol) polarization free energy of solvation -33.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds