Wall clock time and date at job start Tue Mar 31 2020 06:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99987 * 2 1 4 4 H 1.09004 * 110.63777 * 26.86369 * 3 2 1 5 5 C 1.54320 * 110.87378 * 263.61553 * 3 2 1 6 6 N 1.47029 * 107.26568 * 219.37059 * 5 3 2 7 7 C 1.36940 * 125.64254 * 178.98241 * 6 5 3 8 8 H 1.08005 * 119.99698 * 179.97438 * 7 6 5 9 9 C 1.38811 * 120.00289 * 359.97438 * 7 6 5 10 10 N 1.31617 * 120.00173 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99935 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46962 * 59.99841 * 11 9 7 13 13 H 1.48499 * 109.46825 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46918 * 299.99838 * 11 9 7 15 15 C 1.47419 * 108.70571 * 358.94129 * 6 5 3 16 16 C 1.54913 * 104.83350 * 24.12747 * 15 6 5 17 17 H 1.08995 * 111.03619 * 81.07895 * 16 15 6 18 18 N 1.46498 * 111.00416 * 204.91830 * 16 15 6 19 19 C 1.34771 * 119.99963 * 267.19506 * 18 16 15 20 20 O 1.21637 * 120.00004 * 0.02562 * 19 18 16 21 21 C 1.47258 * 120.00139 * 180.02562 * 19 18 16 22 22 C 1.38938 * 120.90494 * 0.02562 * 21 19 18 23 23 C 1.39765 * 119.19037 * 180.25819 * 22 21 19 24 24 C 1.35072 * 121.27451 * 359.43992 * 23 22 21 25 25 N 1.36235 * 121.76695 * 0.55259 * 24 23 22 26 26 N 1.40081 * 132.48065 * 179.74286 * 25 24 23 27 27 C 1.31357 * 108.87641 * 180.02562 * 26 25 24 28 28 C 1.38879 * 108.95008 * 0.02562 * 27 26 25 29 29 C 1.37183 * 120.19329 * 359.74776 * 25 24 23 30 30 H 1.08995 * 109.47198 * 299.99574 * 1 2 3 31 31 H 1.08999 * 109.47201 * 59.99977 * 1 2 3 32 32 H 1.09001 * 109.46977 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.88505 * 338.78073 * 5 3 2 34 34 H 1.08997 * 109.88387 * 99.95627 * 5 3 2 35 35 H 0.96999 * 120.00523 * 179.97438 * 10 9 7 36 36 H 1.08998 * 110.36536 * 265.28765 * 15 6 5 37 37 H 1.09002 * 110.36931 * 142.96949 * 15 6 5 38 38 H 0.97001 * 120.00180 * 87.19674 * 18 16 15 39 39 H 1.08002 * 120.40153 * 359.97438 * 22 21 19 40 40 H 1.07996 * 119.36219 * 179.70507 * 23 22 21 41 41 H 1.08000 * 119.11654 * 180.31824 * 24 23 22 42 42 H 1.08005 * 125.52589 * 179.97438 * 27 26 25 43 43 H 1.07998 * 126.21802 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3352 2.0266 0.4609 5 6 2.3804 1.7426 -1.4330 6 7 3.6668 2.4502 -1.3548 7 6 4.3515 2.9807 -2.4155 8 1 5.2930 3.4844 -2.2530 9 6 3.8354 2.8713 -3.6995 10 7 2.6883 2.2571 -3.8976 11 14 4.7691 3.5957 -5.1462 12 1 6.1067 2.9578 -5.2415 13 1 4.0118 3.3462 -6.3990 14 1 4.9313 5.0585 -4.9482 15 6 4.0970 2.4947 0.0545 16 6 3.3816 1.2957 0.7256 17 1 3.9169 0.3652 0.5369 18 7 3.2164 1.5209 2.1638 19 6 4.1465 1.0686 3.0279 20 8 5.1234 0.4739 2.6136 21 6 3.9802 1.2944 4.4735 22 6 2.8716 1.9708 4.9672 23 6 2.7526 2.1699 6.3455 24 6 3.6875 1.7081 7.2040 25 7 4.7919 1.0389 6.7697 26 7 5.8836 0.4770 7.4441 27 6 6.6943 -0.0642 6.5635 28 6 6.1682 0.1223 5.2918 29 6 4.9785 0.8117 5.4298 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.4775 0.8666 -2.0743 34 1 1.6137 2.4098 -1.8267 35 1 2.3275 2.1809 -4.7947 36 1 3.7840 3.4307 0.5172 37 1 5.1786 2.3789 0.1249 38 1 2.4376 1.9954 2.4941 39 1 2.1134 2.3423 4.2937 40 1 1.8944 2.6995 6.7318 41 1 3.5580 1.8771 8.2628 42 1 7.6202 -0.5713 6.7915 43 1 6.6081 -0.2121 4.3639 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081895151.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:29 Heat of formation + Delta-G solvation = 71.634509 kcal Electronic energy + Delta-G solvation = -27894.080068 eV Core-core repulsion = 23943.074259 eV Total energy + Delta-G solvation = -3951.005810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.10089 -39.75105 -38.17894 -37.24993 -35.93625 -34.17564 -33.05732 -31.70855 -30.88730 -29.15020 -28.50317 -27.12278 -26.14513 -25.06246 -24.01839 -22.89854 -21.97543 -20.83500 -20.54822 -20.05653 -17.95181 -17.59415 -16.98611 -16.65016 -16.42370 -15.83422 -15.78182 -15.47077 -14.97422 -14.59408 -14.51401 -14.24514 -14.07444 -13.99743 -13.36976 -13.25064 -12.81702 -12.62091 -12.46696 -12.28114 -12.05818 -11.91086 -11.62378 -11.26446 -11.03390 -11.00520 -10.80812 -10.77469 -10.55540 -10.20408 -10.04428 -9.88245 -9.79990 -9.62404 -9.19982 -8.80722 -8.60639 -7.84585 -6.90874 -5.74599 -3.09814 0.09120 0.86351 1.95398 2.51096 2.61143 3.11424 3.40952 3.45036 3.46081 3.46991 3.99286 4.09694 4.12107 4.36327 4.45458 4.50904 4.70224 5.01057 5.11332 5.20110 5.33619 5.37310 5.46578 5.49575 5.53728 5.61051 5.66090 5.68084 5.81148 5.83234 5.89215 5.99312 6.04730 6.11775 6.43323 6.50115 6.57527 6.60651 6.80307 7.22637 7.31247 7.45273 7.56632 7.69067 7.83985 8.18285 8.27993 9.16033 9.76107 10.38788 11.36724 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.017223 B = 0.002885 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.380564 B = 9703.118223 C =10594.925721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.377 6.377 3 C 0.056 3.944 4 H 0.062 0.938 5 C 0.165 3.835 6 N -0.600 5.600 7 C -0.230 4.230 8 H 0.081 0.919 9 C -0.006 4.006 10 N -0.923 5.923 11 Si 0.915 3.085 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.285 1.285 15 C 0.131 3.869 16 C 0.133 3.867 17 H 0.110 0.890 18 N -0.709 5.709 19 C 0.565 3.435 20 O -0.521 6.521 21 C -0.118 4.118 22 C -0.042 4.042 23 C -0.179 4.179 24 C 0.137 3.863 25 N -0.287 5.287 26 N -0.319 5.319 27 C 0.078 3.922 28 C -0.252 4.252 29 C 0.125 3.875 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.254 0.746 36 H 0.023 0.977 37 H 0.051 0.949 38 H 0.394 0.606 39 H 0.146 0.854 40 H 0.159 0.841 41 H 0.168 0.832 42 H 0.195 0.805 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.385 -1.109 21.576 22.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.295 6.295 3 C -0.003 4.003 4 H 0.080 0.920 5 C 0.040 3.960 6 N -0.327 5.327 7 C -0.358 4.358 8 H 0.098 0.902 9 C -0.202 4.202 10 N -0.570 5.570 11 Si 0.745 3.255 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.211 1.211 15 C 0.003 3.997 16 C 0.028 3.972 17 H 0.128 0.872 18 N -0.359 5.359 19 C 0.351 3.649 20 O -0.397 6.397 21 C -0.124 4.124 22 C -0.065 4.065 23 C -0.201 4.201 24 C 0.011 3.989 25 N -0.055 5.055 26 N -0.142 5.142 27 C -0.099 4.099 28 C -0.281 4.281 29 C 0.007 3.993 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.041 0.959 37 H 0.070 0.930 38 H 0.229 0.771 39 H 0.163 0.837 40 H 0.177 0.823 41 H 0.186 0.814 42 H 0.212 0.788 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.678 -1.544 22.329 22.683 hybrid contribution -0.173 0.734 -1.406 1.595 sum -3.851 -0.810 20.924 21.290 Atomic orbital electron populations 1.22711 0.81734 1.02099 0.99712 1.87921 1.19074 1.27506 1.95028 1.23856 0.92859 0.84092 0.99536 0.91963 1.21562 0.88273 0.97251 0.88945 1.44243 1.21498 1.66321 1.00688 1.19034 1.02479 1.29535 0.84749 0.90160 1.24815 0.97417 1.00622 0.97395 1.69920 1.19244 1.47077 1.20747 0.86155 0.78907 0.78695 0.81744 1.21014 1.21578 1.21132 1.21826 0.97893 0.93700 0.86273 1.22468 0.96616 1.01358 0.76772 0.87204 1.45784 1.24555 1.58340 1.07246 1.17549 0.83309 0.79468 0.84591 1.90814 1.29360 1.40652 1.78912 1.20544 0.95049 1.03788 0.93008 1.21742 0.95517 0.93451 0.95827 1.20617 1.00953 1.05746 0.92765 1.21508 0.83996 0.92124 1.01243 1.46239 1.16057 1.37370 1.05799 1.77845 0.96608 1.21008 1.18713 1.23987 0.98675 0.96244 0.91034 1.21606 0.96672 1.10333 0.99484 1.20138 0.96395 0.99471 0.83296 0.94877 0.93613 0.90222 0.91880 0.93301 0.93585 0.95913 0.93038 0.77119 0.83664 0.82302 0.81427 0.78799 0.81430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.85 101.05 1.10 1.56 16 2 O -0.38 -6.75 10.44 -35.23 -0.37 -7.11 16 3 C 0.06 1.01 3.09 -24.90 -0.08 0.94 16 4 H 0.06 0.97 7.68 -51.93 -0.40 0.57 16 5 C 0.17 3.92 5.15 -3.06 -0.02 3.91 16 6 N -0.60 -15.18 3.39 -170.07 -0.58 -15.76 16 7 C -0.23 -6.38 10.28 -15.06 -0.15 -6.54 16 8 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 9 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 10 N -0.92 -26.71 10.31 55.49 0.57 -26.13 16 11 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 C 0.13 2.72 6.93 -2.53 -0.02 2.71 16 16 C 0.13 2.42 3.15 -65.78 -0.21 2.21 16 17 H 0.11 2.31 7.54 -51.93 -0.39 1.92 16 18 N -0.71 -10.00 5.15 -52.85 -0.27 -10.27 16 19 C 0.56 8.65 7.77 -12.60 -0.10 8.56 16 20 O -0.52 -9.92 14.83 5.25 0.08 -9.84 16 21 C -0.12 -1.48 6.06 -102.68 -0.62 -2.10 16 22 C -0.04 -0.35 9.63 -38.75 -0.37 -0.72 16 23 C -0.18 -1.14 9.90 -40.14 -0.40 -1.53 16 24 C 0.14 1.10 11.12 -16.72 -0.19 0.92 16 25 N -0.29 -3.45 3.89 -9.41 -0.04 -3.48 16 26 N -0.32 -4.04 12.66 30.51 0.39 -3.65 16 27 C 0.08 0.90 11.95 -17.52 -0.21 0.69 16 28 C -0.25 -3.43 10.17 -39.36 -0.40 -3.83 16 29 C 0.13 1.71 6.85 -82.19 -0.56 1.14 16 30 H 0.03 0.36 8.11 -51.93 -0.42 -0.06 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 1.72 7.30 -51.93 -0.38 1.34 16 34 H 0.05 1.25 7.51 -51.93 -0.39 0.86 16 35 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.39 4.15 6.67 -40.82 -0.27 3.87 16 39 H 0.15 0.79 6.49 -52.49 -0.34 0.45 16 40 H 0.16 0.41 8.06 -52.49 -0.42 -0.01 16 41 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.20 1.44 8.06 -52.48 -0.42 1.01 16 43 H 0.17 2.39 7.10 -52.49 -0.37 2.02 16 LS Contribution 361.22 15.07 5.44 5.44 Total: -1.00 -35.53 361.22 -7.59 -43.12 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.47 Total: 3.07 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: -2.32 Total: 7.64 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: 0.07 Total: -59.29 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.29 Total: -16.95 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.53 -7.59 -43.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081895151.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.753 kcal (2) G-P(sol) polarization free energy of solvation -35.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds