Wall clock time and date at job start Tue Mar 31 2020 06:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99615 * 2 1 4 4 H 1.08996 * 110.88821 * 32.42704 * 3 2 1 5 5 C 1.54907 * 111.00338 * 268.54180 * 3 2 1 6 6 N 1.47424 * 104.83241 * 204.88136 * 5 3 2 7 7 C 1.36943 * 125.64955 * 204.09232 * 6 5 3 8 8 H 1.08002 * 119.99788 * 180.02562 * 7 6 5 9 9 C 1.38811 * 119.99622 * 0.30258 * 7 6 5 10 10 N 1.31614 * 120.00467 * 359.72375 * 9 7 6 11 11 Si 1.86801 * 119.99700 * 179.72266 * 9 7 6 12 12 H 1.48504 * 109.47306 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47021 * 119.99661 * 11 9 7 14 14 H 1.48501 * 109.47039 * 240.00078 * 11 9 7 15 15 C 1.47024 * 108.70428 * 24.35838 * 6 5 3 16 16 C 1.54336 * 107.26414 * 358.58383 * 15 6 5 17 17 H 1.09001 * 110.51267 * 96.44857 * 16 15 6 18 18 N 1.46497 * 111.00488 * 219.60321 * 16 15 6 19 19 C 1.34783 * 119.99813 * 268.78501 * 18 16 15 20 20 O 1.21594 * 119.99745 * 359.97438 * 19 18 16 21 21 C 1.47512 * 119.99970 * 179.97438 * 19 18 16 22 22 C 1.41045 * 119.39306 * 359.72911 * 21 19 18 23 23 C 1.35190 * 121.65641 * 179.69860 * 22 21 19 24 24 C 1.41387 * 119.92748 * 0.56646 * 23 22 21 25 25 N 1.31928 * 134.39296 * 179.71469 * 24 23 22 26 26 N 1.39917 * 109.05895 * 179.97438 * 25 24 23 27 27 H 0.96998 * 124.98345 * 179.97438 * 26 25 24 28 28 C 1.33816 * 110.02759 * 0.02562 * 26 25 24 29 29 C 1.38535 * 107.83662 * 359.97438 * 28 26 25 30 30 C 1.38219 * 119.39679 * 179.97438 * 21 19 18 31 31 H 1.08998 * 109.47405 * 300.00228 * 1 2 3 32 32 H 1.09009 * 109.47143 * 60.00108 * 1 2 3 33 33 H 1.09004 * 109.47065 * 179.97438 * 1 2 3 34 34 H 1.09001 * 110.36805 * 86.04304 * 5 3 2 35 35 H 1.08999 * 110.36920 * 323.72033 * 5 3 2 36 36 H 0.96995 * 120.00147 * 180.02562 * 10 9 7 37 37 H 1.08998 * 109.88094 * 118.13011 * 15 6 5 38 38 H 1.09003 * 109.88256 * 239.30018 * 15 6 5 39 39 H 0.96994 * 120.00057 * 88.77846 * 18 16 15 40 40 H 1.08006 * 119.17065 * 359.97438 * 22 21 19 41 41 H 1.07998 * 120.03477 * 180.28893 * 23 22 21 42 42 H 1.07998 * 126.07928 * 180.02562 * 28 26 25 43 43 H 1.08002 * 120.32212 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3829 2.0101 0.5461 5 6 2.2695 1.7978 -1.4457 6 7 3.3604 2.7814 -1.3194 7 6 3.6225 3.7996 -2.1968 8 1 4.4495 4.4700 -2.0146 9 6 2.8219 3.9735 -3.3173 10 7 1.8142 3.1565 -3.5394 11 14 3.1747 5.3671 -4.5101 12 1 4.3530 6.1373 -4.0370 13 1 3.4569 4.8071 -5.8562 14 1 1.9945 6.2653 -4.5850 15 6 4.1242 2.4842 -0.0988 16 6 3.4484 1.2749 0.5814 17 1 3.9555 0.3498 0.3073 18 7 3.4225 1.4379 2.0371 19 6 4.4338 0.9569 2.7871 20 8 5.3673 0.3872 2.2556 21 6 4.4081 1.1216 4.2528 22 6 3.3218 1.7896 4.8554 23 6 3.2486 1.9608 6.1944 24 6 4.2841 1.4746 7.0253 25 7 4.5059 1.4856 8.3258 26 7 5.7202 0.8417 8.5876 27 1 6.1061 0.7194 9.4690 28 6 6.2714 0.4201 7.4434 29 6 5.4258 0.7806 6.4069 30 6 5.4514 0.6229 5.0099 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.3759 2.2724 -1.8509 35 1 2.5794 0.9669 -2.0795 36 1 1.2550 3.2778 -4.3226 37 1 5.1545 2.2390 -0.3567 38 1 4.1021 3.3439 0.5709 39 1 2.6777 1.8922 2.4611 40 1 2.5262 2.1700 4.2317 41 1 2.4023 2.4723 6.6285 42 1 7.2084 -0.1080 7.3455 43 1 6.2779 0.1169 4.5332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082075482.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:04 Heat of formation + Delta-G solvation = 54.242151 kcal Electronic energy + Delta-G solvation = -27519.102977 eV Core-core repulsion = 23567.342979 eV Total energy + Delta-G solvation = -3951.759999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.62457 -39.79742 -38.19567 -36.81812 -35.84952 -34.06282 -32.46276 -31.89018 -30.94805 -29.40358 -28.65708 -27.10316 -26.07571 -24.95188 -23.96331 -22.94829 -21.01648 -20.73881 -20.49433 -19.84267 -18.54320 -17.84774 -17.02048 -16.76645 -16.43240 -15.49912 -15.30491 -15.16659 -14.65860 -14.52850 -14.29379 -14.24062 -14.20815 -13.98625 -13.43343 -13.19360 -13.11512 -12.75916 -12.21721 -12.04716 -11.86504 -11.72630 -11.38890 -11.26266 -10.98678 -10.83147 -10.77071 -10.68229 -10.62922 -10.15257 -9.86999 -9.79645 -9.72806 -9.16706 -9.03386 -8.69228 -8.62864 -7.92885 -6.87981 -5.68163 -3.11024 0.21416 1.23685 2.04357 2.27997 2.99683 3.33811 3.39867 3.45562 3.48050 3.83285 3.92270 4.15964 4.22850 4.50559 4.71468 4.80792 4.89410 5.04304 5.14950 5.29766 5.31959 5.44970 5.55434 5.65780 5.71723 5.73140 5.81348 5.88482 6.00414 6.08879 6.11524 6.15247 6.22475 6.25297 6.47370 6.53540 6.62636 6.71916 6.95227 7.19011 7.28515 7.57834 7.73212 7.76974 7.83228 8.28481 8.46743 9.17694 9.78080 10.40686 11.35671 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.018700 B = 0.002592 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.002285 B =10798.364247 C =11469.632310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.381 6.381 3 C 0.054 3.946 4 H 0.066 0.934 5 C 0.139 3.861 6 N -0.601 5.601 7 C -0.220 4.220 8 H 0.081 0.919 9 C -0.012 4.012 10 N -0.923 5.923 11 Si 0.917 3.083 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.290 1.290 15 C 0.130 3.870 16 C 0.137 3.863 17 H 0.104 0.896 18 N -0.711 5.711 19 C 0.562 3.438 20 O -0.543 6.543 21 C -0.170 4.170 22 C -0.049 4.049 23 C -0.111 4.111 24 C 0.120 3.880 25 N -0.311 5.311 26 N -0.424 5.424 27 H 0.445 0.555 28 C 0.103 3.897 29 C -0.220 4.220 30 C 0.035 3.965 31 H 0.033 0.967 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.026 0.974 36 H 0.252 0.748 37 H 0.034 0.966 38 H 0.031 0.969 39 H 0.396 0.604 40 H 0.130 0.870 41 H 0.133 0.867 42 H 0.194 0.806 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.946 -6.052 23.072 24.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.299 6.299 3 C -0.005 4.005 4 H 0.084 0.916 5 C 0.014 3.986 6 N -0.329 5.329 7 C -0.348 4.348 8 H 0.099 0.901 9 C -0.207 4.207 10 N -0.572 5.572 11 Si 0.747 3.253 12 H -0.205 1.205 13 H -0.217 1.217 14 H -0.217 1.217 15 C 0.003 3.997 16 C 0.033 3.967 17 H 0.122 0.878 18 N -0.361 5.361 19 C 0.350 3.650 20 O -0.421 6.421 21 C -0.175 4.175 22 C -0.072 4.072 23 C -0.132 4.132 24 C -0.035 4.035 25 N -0.139 5.139 26 N -0.123 5.123 27 H 0.289 0.711 28 C -0.056 4.056 29 C -0.230 4.230 30 C 0.013 3.987 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.130 0.870 35 H 0.044 0.956 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.231 0.769 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.210 0.790 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.161 -6.150 23.666 24.655 hybrid contribution 0.158 0.781 -0.683 1.050 sum 3.319 -5.369 22.983 23.834 Atomic orbital electron populations 1.22695 0.81605 1.01876 1.00015 1.87846 1.19227 1.27686 1.95133 1.24023 0.92233 0.83779 1.00503 0.91619 1.22333 0.95356 0.91879 0.89078 1.44325 1.31726 1.33078 1.23734 1.19149 1.10969 1.04025 1.00673 0.90135 1.24802 0.98054 0.99350 0.98474 1.69759 1.19948 1.38600 1.28886 0.85963 0.77382 0.81126 0.80821 1.20465 1.21696 1.21749 1.21618 0.95159 0.93717 0.89206 1.22120 0.96404 1.00480 0.77735 0.87801 1.45889 1.23677 1.59021 1.07544 1.18096 0.82295 0.78354 0.86288 1.90773 1.34450 1.43023 1.73889 1.19544 0.97823 1.06946 0.93184 1.20714 0.96600 0.95412 0.94428 1.19720 0.97776 1.03942 0.91812 1.21069 0.95373 0.96509 0.90555 1.77665 0.99050 1.22224 1.14916 1.46337 1.16461 1.40480 1.09065 0.71077 1.22883 0.98884 0.98125 0.85720 1.19570 0.97960 1.10931 0.94503 1.20684 0.96248 0.91913 0.89837 0.94794 0.93441 0.90372 0.86991 0.95582 0.93681 0.94784 0.95137 0.76858 0.85186 0.84870 0.78958 0.84096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.89 101.05 1.10 1.61 16 2 O -0.38 -7.02 10.52 -35.23 -0.37 -7.39 16 3 C 0.05 1.04 3.12 -24.58 -0.08 0.97 16 4 H 0.07 1.17 7.77 -51.93 -0.40 0.76 16 5 C 0.14 3.39 5.63 -2.53 -0.01 3.37 16 6 N -0.60 -15.45 3.39 -170.06 -0.58 -16.02 16 7 C -0.22 -6.11 10.27 -15.06 -0.15 -6.27 16 8 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 9 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 10 N -0.92 -26.55 10.09 55.49 0.56 -25.99 16 11 Si 0.92 21.95 29.55 -169.99 -5.02 16.92 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 15 C 0.13 2.84 7.01 -3.06 -0.02 2.82 16 16 C 0.14 2.62 3.04 -66.09 -0.20 2.42 16 17 H 0.10 2.19 7.55 -51.93 -0.39 1.79 16 18 N -0.71 -10.97 5.06 -53.07 -0.27 -11.24 16 19 C 0.56 8.93 7.75 -12.48 -0.10 8.84 16 20 O -0.54 -10.49 15.90 5.28 0.08 -10.40 16 21 C -0.17 -2.17 5.86 -105.06 -0.62 -2.79 16 22 C -0.05 -0.52 9.39 -39.60 -0.37 -0.89 16 23 C -0.11 -1.16 10.06 -39.47 -0.40 -1.56 16 24 C 0.12 1.35 7.49 -82.98 -0.62 0.73 16 25 N -0.31 -3.32 12.69 33.30 0.42 -2.90 16 26 N -0.42 -2.73 7.17 30.87 0.22 -2.51 16 27 H 0.44 1.06 8.96 -182.74 -1.64 -0.58 16 28 C 0.10 0.64 12.09 -16.58 -0.20 0.44 16 29 C -0.22 -2.23 6.32 -105.24 -0.66 -2.89 16 30 C 0.03 0.40 9.64 -38.69 -0.37 0.03 16 31 H 0.03 0.42 8.11 -51.93 -0.42 0.00 16 32 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.11 2.99 5.86 -51.93 -0.30 2.68 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 39 H 0.40 4.98 6.49 -40.82 -0.26 4.71 16 40 H 0.13 1.11 6.27 -52.48 -0.33 0.78 16 41 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.19 0.34 8.06 -52.49 -0.42 -0.08 16 43 H 0.14 1.54 7.58 -52.49 -0.40 1.14 16 LS Contribution 361.18 15.07 5.44 5.44 Total: -1.00 -35.94 361.18 -8.96 -44.91 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -6.65 Total: 2.78 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -2.80 Total: 6.41 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: 0.36 Total: -58.67 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.29 Total: -17.79 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.94 -8.96 -44.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082075482.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.151 kcal (2) G-P(sol) polarization free energy of solvation -35.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds