Wall clock time and date at job start Tue Mar 31 2020 06:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00150 * 2 1 4 4 H 1.09007 * 110.77837 * 26.76677 * 3 2 1 5 5 C 1.54322 * 110.72411 * 263.52316 * 3 2 1 6 6 N 1.47020 * 107.27294 * 219.44372 * 5 3 2 7 7 C 1.36929 * 125.64988 * 178.89673 * 6 5 3 8 8 H 1.08000 * 120.00159 * 174.88165 * 7 6 5 9 9 C 1.38815 * 120.00223 * 354.88033 * 7 6 5 10 10 N 1.31629 * 119.99538 * 7.06772 * 9 7 6 11 11 Si 1.86798 * 120.00419 * 187.06468 * 9 7 6 12 12 H 1.48500 * 109.46926 * 94.98570 * 11 9 7 13 13 H 1.48495 * 109.47011 * 214.98901 * 11 9 7 14 14 H 1.48504 * 109.47009 * 334.99054 * 11 9 7 15 15 C 1.47422 * 108.70050 * 358.94049 * 6 5 3 16 16 C 1.54903 * 104.83504 * 24.12768 * 15 6 5 17 17 H 1.09006 * 111.03639 * 81.07814 * 16 15 6 18 18 N 1.46503 * 111.00731 * 204.91378 * 16 15 6 19 19 C 1.34772 * 120.00121 * 267.19946 * 18 16 15 20 20 O 1.21792 * 120.00093 * 359.97438 * 19 18 16 21 21 C 1.41698 * 119.99851 * 179.72422 * 19 18 16 22 22 C 1.39194 * 125.87410 * 179.97438 * 21 19 18 23 23 C 1.38086 * 107.67619 * 179.83300 * 22 21 19 24 24 C 1.39503 * 107.56780 * 0.42453 * 23 22 21 25 25 C 1.40625 * 132.41442 * 179.75989 * 24 23 22 26 26 C 1.36295 * 119.15968 * 179.97438 * 25 24 23 27 27 C 1.39968 * 120.03876 * 359.97438 * 26 25 24 28 28 N 1.30642 * 120.99140 * 0.02562 * 27 26 25 29 29 N 1.37158 * 108.20480 * 359.73395 * 24 23 22 30 30 H 1.09001 * 109.46909 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47052 * 299.99798 * 1 2 3 32 32 H 1.09002 * 109.46773 * 59.99794 * 1 2 3 33 33 H 1.08999 * 109.88069 * 338.86543 * 5 3 2 34 34 H 1.09006 * 109.88144 * 100.02576 * 5 3 2 35 35 H 0.96998 * 119.99658 * 180.02562 * 10 9 7 36 36 H 1.09004 * 110.36886 * 265.29086 * 15 6 5 37 37 H 1.09000 * 110.36702 * 142.97040 * 15 6 5 38 38 H 0.97004 * 120.00038 * 87.19966 * 18 16 15 39 39 H 1.08002 * 126.16023 * 0.02562 * 22 21 19 40 40 H 1.08003 * 126.21455 * 180.17667 * 23 22 21 41 41 H 1.08004 * 120.41711 * 359.97438 * 25 24 23 42 42 H 1.07995 * 119.97529 * 179.97438 * 26 25 24 43 43 H 1.08002 * 119.50152 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3363 2.0289 0.4590 5 6 2.3811 1.7381 -1.4342 6 7 3.6686 2.4440 -1.3580 7 6 4.3548 2.9691 -2.4202 8 1 5.2542 3.5428 -2.2517 9 6 3.8946 2.7642 -3.7137 10 7 2.7287 2.1869 -3.9136 11 14 4.9297 3.3077 -5.1706 12 1 5.7405 2.1624 -5.6564 13 1 4.0397 3.7818 -6.2606 14 1 5.8317 4.4109 -4.7528 15 6 4.0988 2.4917 0.0512 16 6 3.3817 1.2958 0.7256 17 1 3.9156 0.3638 0.5394 18 7 3.2168 1.5250 2.1632 19 6 4.1463 1.0738 3.0285 20 8 5.1231 0.4749 2.6154 21 6 3.9897 1.3006 4.4184 22 6 4.8695 0.8905 5.4160 23 6 4.3556 1.3105 6.6269 24 6 3.1541 1.9704 6.3682 25 6 2.2128 2.5911 7.2087 26 6 1.1078 3.1673 6.6567 27 6 0.9206 3.1373 5.2699 28 7 1.7927 2.5617 4.4857 29 7 2.9413 1.9577 5.0133 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.4768 0.8602 -2.0731 34 1 1.6153 2.4054 -1.8298 35 1 2.4072 2.0433 -4.8174 36 1 3.7872 3.4294 0.5115 37 1 5.1802 2.3745 0.1219 38 1 2.4386 2.0016 2.4922 39 1 5.7899 0.3449 5.2691 40 1 4.8009 1.1530 7.5982 41 1 2.3637 2.6110 8.2779 42 1 0.3763 3.6472 7.2899 43 1 0.0421 3.5970 4.8418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082209457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:12 Heat of formation + Delta-G solvation = 70.532456 kcal Electronic energy + Delta-G solvation = -28266.860705 eV Core-core repulsion = 24315.807107 eV Total energy + Delta-G solvation = -3951.053598 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.24064 -39.52040 -38.18254 -37.31093 -35.82698 -34.18114 -33.49483 -31.70998 -30.71998 -29.46747 -28.53424 -27.03571 -26.06941 -25.09622 -24.20613 -23.33635 -21.64001 -20.64866 -20.32597 -20.03006 -18.61805 -17.54551 -16.97197 -16.42928 -16.23611 -16.04996 -15.86671 -15.43586 -14.79897 -14.47345 -14.36332 -14.18883 -13.96110 -13.94248 -13.43128 -13.20258 -13.10288 -12.62958 -12.53589 -12.36173 -12.14816 -11.83512 -11.52035 -11.17937 -11.13125 -10.98065 -10.93135 -10.77393 -10.69465 -10.13462 -9.96968 -9.86051 -9.73745 -9.17366 -9.07136 -8.67862 -8.50781 -8.01960 -6.84011 -5.70680 -3.04080 0.08771 0.70605 1.60522 2.09651 2.90716 3.42750 3.47095 3.49692 3.51516 3.54249 3.85314 4.12819 4.19973 4.24727 4.51760 4.55241 4.89996 4.99242 5.08636 5.22272 5.30000 5.42398 5.45922 5.51785 5.63041 5.63221 5.69929 5.75773 5.80362 5.88391 5.90723 5.95500 6.12830 6.24337 6.31966 6.49495 6.60570 6.69672 6.94399 7.24979 7.31073 7.52057 7.75971 7.82760 7.91955 8.24100 8.46545 9.21232 9.81560 10.45892 11.41184 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.017086 B = 0.003122 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.368778 B = 8965.649058 C = 9513.328258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.377 6.377 3 C 0.057 3.943 4 H 0.061 0.939 5 C 0.165 3.835 6 N -0.600 5.600 7 C -0.229 4.229 8 H 0.081 0.919 9 C -0.006 4.006 10 N -0.920 5.920 11 Si 0.913 3.087 12 H -0.288 1.288 13 H -0.292 1.292 14 H -0.280 1.280 15 C 0.131 3.869 16 C 0.131 3.869 17 H 0.108 0.892 18 N -0.709 5.709 19 C 0.584 3.416 20 O -0.534 6.534 21 C -0.015 4.015 22 C -0.081 4.081 23 C -0.170 4.170 24 C -0.002 4.002 25 C -0.007 4.007 26 C -0.204 4.204 27 C 0.141 3.859 28 N -0.280 5.280 29 N -0.235 5.235 30 H 0.079 0.921 31 H 0.032 0.968 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.253 0.747 36 H 0.021 0.979 37 H 0.052 0.948 38 H 0.403 0.597 39 H 0.168 0.832 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.151 0.849 43 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.196 1.005 25.355 26.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.295 6.295 3 C -0.002 4.002 4 H 0.079 0.921 5 C 0.040 3.960 6 N -0.328 5.328 7 C -0.357 4.357 8 H 0.099 0.901 9 C -0.203 4.203 10 N -0.567 5.567 11 Si 0.743 3.257 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.206 1.206 15 C 0.004 3.996 16 C 0.026 3.974 17 H 0.126 0.874 18 N -0.361 5.361 19 C 0.371 3.629 20 O -0.411 6.411 21 C -0.132 4.132 22 C -0.106 4.106 23 C -0.196 4.196 24 C -0.113 4.113 25 C -0.034 4.034 26 C -0.227 4.227 27 C -0.051 4.051 28 N -0.089 5.089 29 N 0.001 4.999 30 H 0.097 0.903 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.039 0.961 37 H 0.070 0.930 38 H 0.241 0.759 39 H 0.185 0.815 40 H 0.175 0.825 41 H 0.173 0.827 42 H 0.168 0.832 43 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -6.492 0.335 23.557 24.437 hybrid contribution -0.434 0.970 0.256 1.093 sum -6.926 1.305 23.813 24.834 Atomic orbital electron populations 1.22697 0.81887 1.01976 0.99638 1.87912 1.18980 1.27589 1.95024 1.23834 0.92987 0.84011 0.99402 0.92095 1.21563 0.88121 0.97314 0.89014 1.44251 1.21154 1.66604 1.00746 1.19085 1.05666 1.26881 0.84032 0.90116 1.24840 0.97317 1.00786 0.97319 1.69962 1.18331 1.48418 1.20020 0.86081 0.79289 0.77998 0.82308 1.21494 1.21807 1.20592 1.21822 0.97859 0.93779 0.86165 1.22422 0.96432 1.01154 0.77438 0.87366 1.46077 1.25159 1.57721 1.07175 1.15723 0.83576 0.79767 0.83810 1.90887 1.29764 1.42049 1.78399 1.19717 0.90218 1.08757 0.94502 1.21380 0.99204 1.00070 0.89932 1.21067 0.94732 1.04555 0.99287 1.19423 0.99913 1.08095 0.83916 1.20948 0.90682 0.91201 1.00558 1.21426 1.00519 1.05344 0.95439 1.24033 0.96419 0.92126 0.92499 1.75466 0.94692 1.12570 1.26178 1.45780 1.13361 1.34793 1.05965 0.90286 0.94991 0.93642 0.91747 0.93583 0.93693 0.96122 0.93001 0.75939 0.81506 0.82542 0.82721 0.83169 0.78603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.85 101.05 1.10 1.63 16 2 O -0.38 -7.50 10.43 -35.23 -0.37 -7.87 16 3 C 0.06 1.17 3.09 -24.90 -0.08 1.09 16 4 H 0.06 1.13 7.69 -51.93 -0.40 0.73 16 5 C 0.17 4.19 5.16 -3.07 -0.02 4.17 16 6 N -0.60 -16.11 3.39 -170.08 -0.58 -16.68 16 7 C -0.23 -6.60 10.27 -15.06 -0.15 -6.75 16 8 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 9 C -0.01 -0.18 5.48 -17.42 -0.10 -0.28 16 10 N -0.92 -27.45 10.36 55.49 0.57 -26.87 16 11 Si 0.91 22.62 29.56 -169.99 -5.02 17.59 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 C 0.13 3.02 6.93 -2.53 -0.02 3.01 16 16 C 0.13 2.74 3.15 -65.78 -0.21 2.54 16 17 H 0.11 2.52 7.54 -51.93 -0.39 2.13 16 18 N -0.71 -12.87 5.19 -54.58 -0.28 -13.15 16 19 C 0.58 10.76 7.60 -14.94 -0.11 10.65 16 20 O -0.53 -11.38 16.43 5.11 0.08 -11.30 16 21 C -0.01 -0.23 6.84 -83.74 -0.57 -0.80 16 22 C -0.08 -1.01 10.49 -39.28 -0.41 -1.42 16 23 C -0.17 -1.65 10.92 -39.17 -0.43 -2.08 16 24 C 0.00 -0.02 6.80 -84.11 -0.57 -0.59 16 25 C -0.01 -0.05 10.12 -39.38 -0.40 -0.45 16 26 C -0.20 -1.09 10.04 -39.63 -0.40 -1.49 16 27 C 0.14 1.00 11.29 -17.41 -0.20 0.81 16 28 N -0.28 -3.25 9.68 30.61 0.30 -2.96 16 29 N -0.24 -3.08 4.01 -8.28 -0.03 -3.11 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.03 0.42 8.11 -51.93 -0.42 0.00 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 1.84 7.21 -51.93 -0.37 1.46 16 34 H 0.05 1.25 7.61 -51.93 -0.40 0.85 16 35 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.40 6.63 6.16 -40.82 -0.25 6.38 16 39 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16 41 H 0.16 0.46 8.06 -52.48 -0.42 0.04 16 42 H 0.15 0.28 8.06 -52.49 -0.42 -0.14 16 43 H 0.20 0.63 8.06 -52.49 -0.42 0.20 16 LS Contribution 362.71 15.07 5.47 5.47 Total: -1.00 -36.61 362.71 -8.01 -44.63 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -5.58 Total: 4.24 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: -2.56 Total: 10.03 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: -0.02 Total: -62.78 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.28 Total: -19.17 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.61 -8.01 -44.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082209457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.159 kcal (2) G-P(sol) polarization free energy of solvation -36.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds