Wall clock time and date at job start Tue Mar 31 2020 06:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00150 * 2 1 4 4 H 1.09007 * 110.77837 * 26.76677 * 3 2 1 5 5 C 1.54322 * 110.72411 * 263.52316 * 3 2 1 6 6 N 1.47020 * 107.27294 * 219.44372 * 5 3 2 7 7 C 1.36929 * 125.64988 * 178.89673 * 6 5 3 8 8 H 1.08000 * 120.00159 * 174.88165 * 7 6 5 9 9 C 1.38815 * 120.00223 * 354.88033 * 7 6 5 10 10 N 1.31629 * 119.99538 * 7.06772 * 9 7 6 11 11 Si 1.86798 * 120.00419 * 187.06468 * 9 7 6 12 12 H 1.48500 * 109.46926 * 94.98570 * 11 9 7 13 13 H 1.48495 * 109.47011 * 214.98901 * 11 9 7 14 14 H 1.48504 * 109.47009 * 334.99054 * 11 9 7 15 15 C 1.47422 * 108.70050 * 358.94049 * 6 5 3 16 16 C 1.54903 * 104.83504 * 24.12768 * 15 6 5 17 17 H 1.09006 * 111.03639 * 81.07814 * 16 15 6 18 18 N 1.46503 * 111.00731 * 204.91378 * 16 15 6 19 19 C 1.34772 * 120.00121 * 267.19946 * 18 16 15 20 20 O 1.21792 * 120.00093 * 359.97438 * 19 18 16 21 21 C 1.41698 * 119.99851 * 179.72422 * 19 18 16 22 22 C 1.39194 * 125.87410 * 179.97438 * 21 19 18 23 23 C 1.38086 * 107.67619 * 179.83300 * 22 21 19 24 24 C 1.39503 * 107.56780 * 0.42453 * 23 22 21 25 25 C 1.40625 * 132.41442 * 179.75989 * 24 23 22 26 26 C 1.36295 * 119.15968 * 179.97438 * 25 24 23 27 27 C 1.39968 * 120.03876 * 359.97438 * 26 25 24 28 28 N 1.30642 * 120.99140 * 0.02562 * 27 26 25 29 29 N 1.37158 * 108.20480 * 359.73395 * 24 23 22 30 30 H 1.09001 * 109.46909 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47052 * 299.99798 * 1 2 3 32 32 H 1.09002 * 109.46773 * 59.99794 * 1 2 3 33 33 H 1.08999 * 109.88069 * 338.86543 * 5 3 2 34 34 H 1.09006 * 109.88144 * 100.02576 * 5 3 2 35 35 H 0.96998 * 119.99658 * 180.02562 * 10 9 7 36 36 H 1.09004 * 110.36886 * 265.29086 * 15 6 5 37 37 H 1.09000 * 110.36702 * 142.97040 * 15 6 5 38 38 H 0.97004 * 120.00038 * 87.19966 * 18 16 15 39 39 H 1.08002 * 126.16023 * 0.02562 * 22 21 19 40 40 H 1.08003 * 126.21455 * 180.17667 * 23 22 21 41 41 H 1.08004 * 120.41711 * 359.97438 * 25 24 23 42 42 H 1.07995 * 119.97529 * 179.97438 * 26 25 24 43 43 H 1.08002 * 119.50152 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3363 2.0289 0.4590 5 6 2.3811 1.7381 -1.4342 6 7 3.6686 2.4440 -1.3580 7 6 4.3548 2.9691 -2.4202 8 1 5.2542 3.5428 -2.2517 9 6 3.8946 2.7642 -3.7137 10 7 2.7287 2.1869 -3.9136 11 14 4.9297 3.3077 -5.1706 12 1 5.7405 2.1624 -5.6564 13 1 4.0397 3.7818 -6.2606 14 1 5.8317 4.4109 -4.7528 15 6 4.0988 2.4917 0.0512 16 6 3.3817 1.2958 0.7256 17 1 3.9156 0.3638 0.5394 18 7 3.2168 1.5250 2.1632 19 6 4.1463 1.0738 3.0285 20 8 5.1231 0.4749 2.6154 21 6 3.9897 1.3006 4.4184 22 6 4.8695 0.8905 5.4160 23 6 4.3556 1.3105 6.6269 24 6 3.1541 1.9704 6.3682 25 6 2.2128 2.5911 7.2087 26 6 1.1078 3.1673 6.6567 27 6 0.9206 3.1373 5.2699 28 7 1.7927 2.5617 4.4857 29 7 2.9413 1.9577 5.0133 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.4768 0.8602 -2.0731 34 1 1.6153 2.4054 -1.8298 35 1 2.4072 2.0433 -4.8174 36 1 3.7872 3.4294 0.5115 37 1 5.1802 2.3745 0.1219 38 1 2.4386 2.0016 2.4922 39 1 5.7899 0.3449 5.2691 40 1 4.8009 1.1530 7.5982 41 1 2.3637 2.6110 8.2779 42 1 0.3763 3.6472 7.2899 43 1 0.0421 3.5970 4.8418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082209457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:11 Heat of formation + Delta-G solvation = 43.405594 kcal Electronic energy + Delta-G solvation = -28268.037014 eV Core-core repulsion = 24315.807107 eV Total energy + Delta-G solvation = -3952.229907 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.04641 -40.98549 -39.68350 -38.14136 -37.55448 -35.72326 -34.40786 -33.60495 -31.48407 -30.90530 -29.98326 -28.70548 -27.58180 -26.35896 -25.52891 -24.32202 -22.71787 -22.28490 -21.77017 -21.47421 -19.80345 -18.97392 -18.25890 -17.88536 -17.33793 -16.97113 -16.84123 -16.79457 -16.42758 -15.92810 -15.86636 -15.67375 -15.34528 -15.09366 -14.65798 -14.55187 -14.26014 -13.99438 -13.77263 -13.65761 -13.33168 -13.14817 -13.06841 -12.98911 -12.79864 -12.63528 -12.39092 -12.08322 -11.91219 -11.73954 -11.72584 -11.58036 -11.31827 -10.79171 -10.68832 -10.21317 -9.97898 -9.01887 -8.81572 -7.91535 -5.29156 -0.47919 -0.09590 0.85041 1.23476 1.43728 1.47706 1.55923 2.04372 2.23914 2.38319 2.44368 2.70890 3.16530 3.27980 3.46172 3.59704 3.73708 3.80136 3.83797 3.94053 3.96670 4.07399 4.28517 4.34022 4.39691 4.47545 4.52232 4.57850 4.73893 4.76198 4.78728 4.79145 4.88384 5.01689 5.13331 5.23379 5.25857 5.32237 5.40985 5.59876 5.62805 5.69428 6.08848 6.23959 6.39924 6.61586 7.00427 7.09856 7.64574 8.28923 9.18794 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.017086 B = 0.003122 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.368778 B = 8965.649058 C = 9513.328258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.079 3.921 4 H 0.089 0.911 5 C 0.178 3.822 6 N -0.619 5.619 7 C -0.253 4.253 8 H 0.083 0.917 9 C -0.059 4.059 10 N -0.946 5.946 11 Si 0.983 3.017 12 H -0.288 1.288 13 H -0.288 1.288 14 H -0.267 1.267 15 C 0.134 3.866 16 C 0.146 3.854 17 H 0.077 0.923 18 N -0.702 5.702 19 C 0.583 3.417 20 O -0.581 6.581 21 C -0.077 4.077 22 C -0.085 4.085 23 C -0.171 4.171 24 C 0.006 3.994 25 C -0.017 4.017 26 C -0.181 4.181 27 C 0.146 3.854 28 N -0.330 5.330 29 N -0.244 5.244 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.040 0.960 33 H 0.023 0.977 34 H 0.024 0.976 35 H 0.250 0.750 36 H 0.034 0.966 37 H 0.038 0.962 38 H 0.413 0.587 39 H 0.166 0.834 40 H 0.194 0.806 41 H 0.198 0.802 42 H 0.198 0.802 43 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.240 2.638 28.973 30.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C 0.020 3.980 4 H 0.106 0.894 5 C 0.052 3.948 6 N -0.347 5.347 7 C -0.381 4.381 8 H 0.101 0.899 9 C -0.253 4.253 10 N -0.594 5.594 11 Si 0.811 3.189 12 H -0.215 1.215 13 H -0.215 1.215 14 H -0.191 1.191 15 C 0.007 3.993 16 C 0.040 3.960 17 H 0.096 0.904 18 N -0.355 5.355 19 C 0.374 3.626 20 O -0.462 6.462 21 C -0.192 4.192 22 C -0.111 4.111 23 C -0.196 4.196 24 C -0.107 4.107 25 C -0.043 4.043 26 C -0.203 4.203 27 C -0.044 4.044 28 N -0.141 5.141 29 N -0.007 5.007 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.253 0.747 39 H 0.183 0.817 40 H 0.211 0.789 41 H 0.215 0.785 42 H 0.215 0.785 43 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -8.558 1.980 27.211 28.593 hybrid contribution -0.017 0.557 -0.651 0.857 sum -8.575 2.537 26.560 28.025 Atomic orbital electron populations 1.22999 0.79229 1.04002 1.00715 1.87892 1.21935 1.26905 1.94947 1.23462 0.93325 0.85144 0.96113 0.89360 1.21282 0.87119 0.94953 0.91476 1.44506 1.21823 1.66543 1.01846 1.19460 1.06106 1.27364 0.85151 0.89897 1.25728 0.98481 1.01139 0.99940 1.70170 1.19650 1.49290 1.20272 0.84998 0.77681 0.77757 0.78497 1.21512 1.21454 1.19121 1.21858 0.97308 0.95234 0.84855 1.21915 0.96063 0.98659 0.79408 0.90439 1.45878 1.25826 1.58225 1.05578 1.16192 0.82573 0.78576 0.85271 1.90834 1.31510 1.44329 1.79537 1.19242 0.93270 1.13658 0.93019 1.21571 0.98926 0.99788 0.90784 1.21462 0.94572 1.03942 0.99599 1.20195 1.00419 1.06721 0.83403 1.21534 0.89962 0.90623 1.02195 1.22029 1.00435 1.02956 0.94913 1.24951 0.95992 0.89718 0.93704 1.75463 0.95460 1.14938 1.28240 1.45795 1.13407 1.34709 1.06821 0.87920 0.92250 0.94099 0.95845 0.95792 0.94039 0.94796 0.94408 0.74717 0.81657 0.78901 0.78538 0.78503 0.74805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.85 113.37 1.23 2.01 16 2 O -0.40 -16.15 10.43 -148.98 -1.55 -17.70 16 3 C 0.08 3.34 3.09 31.78 0.10 3.44 16 4 H 0.09 3.24 7.69 -2.38 -0.02 3.22 16 5 C 0.18 9.46 5.16 86.73 0.45 9.90 16 6 N -0.62 -34.84 3.39 -692.01 -2.35 -37.19 16 7 C -0.25 -15.09 10.27 84.04 0.86 -14.23 16 8 H 0.08 4.77 7.84 -2.91 -0.02 4.75 16 9 C -0.06 -3.51 5.48 84.86 0.46 -3.05 16 10 N -0.95 -58.48 10.36 21.65 0.22 -58.26 16 11 Si 0.98 47.49 29.56 68.60 2.03 49.52 16 12 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 13 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 14 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 15 C 0.13 6.50 6.93 86.85 0.60 7.10 16 16 C 0.15 6.46 3.15 46.38 0.15 6.61 16 17 H 0.08 3.91 7.54 -2.38 -0.02 3.89 16 18 N -0.70 -26.57 5.19 -444.78 -2.31 -28.88 16 19 C 0.58 22.90 7.60 85.10 0.65 23.54 16 20 O -0.58 -26.89 16.43 -4.64 -0.08 -26.97 16 21 C -0.08 -2.42 6.84 39.37 0.27 -2.15 16 22 C -0.09 -2.17 10.49 22.46 0.24 -1.93 16 23 C -0.17 -2.99 10.92 22.54 0.25 -2.74 16 24 C 0.01 0.11 6.80 39.20 0.27 0.38 16 25 C -0.02 -0.13 10.12 22.40 0.23 0.09 16 26 C -0.18 -0.87 10.04 22.24 0.22 -0.65 16 27 C 0.15 1.46 11.29 85.29 0.96 2.42 16 28 N -0.33 -7.06 9.68 -57.06 -0.55 -7.61 16 29 N -0.24 -6.17 4.01 -180.11 -0.72 -6.90 16 30 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.06 1.43 8.11 -2.39 -0.02 1.41 16 32 H 0.04 1.23 8.14 -2.39 -0.02 1.22 16 33 H 0.02 1.42 7.21 -2.39 -0.02 1.40 16 34 H 0.02 1.36 7.61 -2.38 -0.02 1.34 16 35 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 36 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.41 13.78 6.16 -92.71 -0.57 13.21 16 39 H 0.17 3.98 8.06 -2.91 -0.02 3.95 16 40 H 0.19 1.72 8.06 -2.91 -0.02 1.70 16 41 H 0.20 -0.15 8.06 -2.91 -0.02 -0.17 16 42 H 0.20 -0.82 8.06 -2.91 -0.02 -0.84 16 43 H 0.24 0.27 8.06 -2.91 -0.02 0.25 16 Total: -1.00 -87.55 362.71 2.09 -85.46 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.47 Total: 17.79 kcal Atomic # 6 Polarization: 23.81 SS G_CDS: 6.93 Total: 30.74 kcal Atomic # 7 Polarization: -133.12 SS G_CDS: -5.71 Total: -138.83 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -1.63 Total: -44.67 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Total: -87.55 2.09 -85.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082209457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.866 kcal (2) G-P(sol) polarization free energy of solvation -87.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds