Wall clock time and date at job start Tue Mar 31 2020 06:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00485 * 2 1 4 4 H 1.09000 * 110.88414 * 32.42243 * 3 2 1 5 5 C 1.54914 * 111.00144 * 268.54653 * 3 2 1 6 6 N 1.47426 * 104.82992 * 204.87916 * 5 3 2 7 7 C 1.36936 * 125.64483 * 204.16378 * 6 5 3 8 8 H 1.08004 * 119.99836 * 179.97438 * 7 6 5 9 9 C 1.38815 * 120.00358 * 359.95842 * 7 6 5 10 10 N 1.31619 * 119.99732 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00198 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46968 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47014 * 119.99939 * 11 9 7 14 14 H 1.48497 * 109.46957 * 239.99998 * 11 9 7 15 15 C 1.47018 * 108.70517 * 24.12623 * 6 5 3 16 16 C 1.54325 * 107.40412 * 358.86539 * 15 6 5 17 17 H 1.09000 * 110.72188 * 96.24097 * 16 15 6 18 18 N 1.46495 * 110.72250 * 219.52320 * 16 15 6 19 19 C 1.34776 * 119.99803 * 273.54657 * 18 16 15 20 20 O 1.21716 * 119.99872 * 359.97438 * 19 18 16 21 21 C 1.46569 * 119.99913 * 180.02562 * 19 18 16 22 22 C 1.40548 * 126.58016 * 359.67638 * 21 19 18 23 23 N 1.30743 * 108.74334 * 179.88510 * 22 21 19 24 24 N 1.40010 * 109.60383 * 0.39469 * 23 22 21 25 25 C 1.36244 * 132.01169 * 179.72771 * 24 23 22 26 26 C 1.35194 * 120.70410 * 180.02562 * 25 24 23 27 27 C 1.40153 * 120.31831 * 0.02562 * 26 25 24 28 28 C 1.36444 * 119.41064 * 359.97438 * 27 26 25 29 29 C 1.36567 * 107.90834 * 359.74877 * 24 23 22 30 30 H 1.08998 * 109.47560 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46858 * 300.00860 * 1 2 3 32 32 H 1.09006 * 109.47103 * 59.99918 * 1 2 3 33 33 H 1.08999 * 110.37121 * 86.03651 * 5 3 2 34 34 H 1.09003 * 110.36718 * 323.71555 * 5 3 2 35 35 H 0.96996 * 119.99954 * 180.02562 * 10 9 7 36 36 H 1.09002 * 109.88241 * 118.36067 * 15 6 5 37 37 H 1.09000 * 109.88049 * 239.37196 * 15 6 5 38 38 H 0.96997 * 120.00433 * 93.54551 * 18 16 15 39 39 H 1.07998 * 125.63091 * 0.02562 * 22 21 19 40 40 H 1.07997 * 119.64957 * 0.02562 * 25 24 23 41 41 H 1.07994 * 119.83537 * 180.02562 * 26 25 24 42 42 H 1.08002 * 120.29077 * 180.02562 * 27 26 25 43 43 H 1.08004 * 120.37556 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3831 2.0100 0.5460 5 6 2.2697 1.7976 -1.4458 6 7 3.3607 2.7811 -1.3195 7 6 3.6220 3.8001 -2.1962 8 1 4.4485 4.4708 -2.0137 9 6 2.8247 3.9707 -3.3197 10 7 1.8173 3.1534 -3.5420 11 14 3.1807 5.3612 -4.5152 12 1 4.3580 6.1322 -4.0413 13 1 3.4671 4.7975 -5.8589 14 1 2.0005 6.2587 -4.5962 15 6 4.1211 2.4872 -0.0961 16 6 3.4498 1.2760 0.5850 17 1 3.9572 0.3504 0.3130 18 7 3.4250 1.4472 2.0397 19 6 4.4818 1.0609 2.7817 20 8 5.4564 0.5694 2.2432 21 6 4.4568 1.2316 4.2372 22 6 3.4122 1.7844 4.9979 23 7 3.7556 1.7656 6.2593 24 7 5.0354 1.2129 6.3895 25 6 5.8235 0.9842 7.4771 26 6 7.0474 0.4269 7.3378 27 6 7.5245 0.0759 6.0676 28 6 6.7426 0.3010 4.9724 29 6 5.4777 0.8791 5.1414 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.3761 2.2723 -1.8510 34 1 2.5795 0.9667 -2.0796 35 1 1.2604 3.2724 -4.3272 36 1 5.1530 2.2447 -0.3502 37 1 4.0965 3.3485 0.5715 38 1 2.6482 1.8385 2.4689 39 1 2.4789 2.1603 4.6055 40 1 5.4668 1.2509 8.4610 41 1 7.6602 0.2515 8.2096 42 1 8.5021 -0.3696 5.9569 43 1 7.0949 0.0369 3.9862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082244981.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:46 Heat of formation + Delta-G solvation = 65.078403 kcal Electronic energy + Delta-G solvation = -27797.810121 eV Core-core repulsion = 23846.520017 eV Total energy + Delta-G solvation = -3951.290104 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.37696 -39.42526 -37.98178 -37.42367 -35.84184 -33.95037 -33.18912 -31.76521 -31.07440 -29.38818 -28.50209 -26.94248 -26.07401 -24.46585 -24.18349 -23.22445 -22.48935 -20.67813 -20.40720 -19.71976 -18.08225 -17.26405 -16.96718 -16.39322 -16.35143 -16.02000 -15.95510 -15.38384 -14.94904 -14.82697 -14.40891 -14.30593 -14.13645 -13.71012 -13.57488 -13.16169 -12.78216 -12.53313 -12.34231 -12.20407 -12.16523 -11.83297 -11.38176 -11.25741 -11.11199 -10.98187 -10.83167 -10.76797 -10.68585 -10.13977 -9.85851 -9.77411 -9.75726 -9.67011 -8.99948 -8.68648 -8.63890 -7.89962 -6.86845 -5.67565 -3.10110 0.35378 0.70857 1.85321 2.02266 2.94599 3.39308 3.42449 3.46047 3.48593 3.66395 3.95196 4.16088 4.27162 4.37742 4.50397 4.51900 4.77136 4.93295 5.10112 5.19133 5.26545 5.37545 5.45982 5.55547 5.66037 5.69248 5.74095 5.75241 5.88052 5.90603 5.99975 6.04291 6.10216 6.18191 6.26724 6.49259 6.57475 6.75504 6.98341 7.16850 7.29204 7.58834 7.74863 7.80208 7.85981 8.29252 8.56364 9.18554 9.78927 10.41780 11.36377 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.017404 B = 0.002802 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.466931 B = 9989.557235 C =10803.117116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.381 6.381 3 C 0.054 3.946 4 H 0.066 0.934 5 C 0.140 3.860 6 N -0.601 5.601 7 C -0.220 4.220 8 H 0.081 0.919 9 C -0.012 4.012 10 N -0.923 5.923 11 Si 0.916 3.084 12 H -0.280 1.280 13 H -0.290 1.290 14 H -0.291 1.291 15 C 0.130 3.870 16 C 0.142 3.858 17 H 0.102 0.898 18 N -0.712 5.712 19 C 0.598 3.402 20 O -0.550 6.550 21 C -0.304 4.304 22 C 0.119 3.881 23 N -0.321 5.321 24 N -0.267 5.267 25 C 0.106 3.894 26 C -0.159 4.159 27 C -0.080 4.080 28 C -0.101 4.101 29 C 0.160 3.840 30 H 0.078 0.922 31 H 0.033 0.967 32 H 0.047 0.953 33 H 0.112 0.888 34 H 0.026 0.974 35 H 0.252 0.748 36 H 0.034 0.966 37 H 0.030 0.970 38 H 0.394 0.606 39 H 0.199 0.801 40 H 0.171 0.829 41 H 0.157 0.843 42 H 0.146 0.854 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.187 -6.309 22.568 23.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.299 6.299 3 C -0.005 4.005 4 H 0.084 0.916 5 C 0.014 3.986 6 N -0.329 5.329 7 C -0.348 4.348 8 H 0.098 0.902 9 C -0.207 4.207 10 N -0.572 5.572 11 Si 0.747 3.253 12 H -0.205 1.205 13 H -0.217 1.217 14 H -0.218 1.218 15 C 0.003 3.997 16 C 0.037 3.963 17 H 0.120 0.880 18 N -0.362 5.362 19 C 0.386 3.614 20 O -0.429 6.429 21 C -0.319 4.319 22 C -0.061 4.061 23 N -0.142 5.142 24 N -0.032 5.032 25 C -0.020 4.020 26 C -0.180 4.180 27 C -0.104 4.104 28 C -0.121 4.121 29 C 0.040 3.960 30 H 0.096 0.904 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.130 0.870 34 H 0.044 0.956 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.228 0.772 39 H 0.215 0.785 40 H 0.188 0.812 41 H 0.175 0.825 42 H 0.163 0.837 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 4.399 -6.385 23.156 24.420 hybrid contribution -0.253 0.937 -1.141 1.498 sum 4.146 -5.449 22.016 23.056 Atomic orbital electron populations 1.22694 0.81609 1.01862 1.00017 1.87842 1.19217 1.27739 1.95136 1.24074 0.92200 0.83729 1.00501 0.91625 1.22323 0.95340 0.91885 0.89034 1.44317 1.31917 1.33070 1.23567 1.19151 1.11057 1.04024 1.00536 0.90162 1.24800 0.98103 0.99354 0.98440 1.69762 1.20074 1.38645 1.28743 0.85963 0.77379 0.81114 0.80850 1.20471 1.21701 1.21757 1.21615 0.95229 0.93729 0.89088 1.22107 0.96307 1.00196 0.77677 0.88049 1.45698 1.18906 1.64028 1.07544 1.16801 0.82731 0.77416 0.84415 1.90765 1.33243 1.45567 1.73311 1.19809 0.96889 1.20835 0.94333 1.24089 0.98703 0.93645 0.89708 1.77576 0.92329 1.24622 1.19673 1.46069 1.12724 1.38615 1.05743 1.21564 0.90565 0.99069 0.90800 1.20943 0.95080 1.02515 0.99480 1.21350 1.00334 0.97114 0.91555 1.20976 0.90750 0.98524 1.01814 1.19340 0.94936 0.96873 0.84895 0.90382 0.94815 0.93426 0.87038 0.95570 0.93699 0.94797 0.95226 0.77198 0.78484 0.81187 0.82526 0.83658 0.81954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.89 101.05 1.10 1.61 16 2 O -0.38 -7.04 10.52 -35.23 -0.37 -7.41 16 3 C 0.05 1.05 3.11 -24.44 -0.08 0.98 16 4 H 0.07 1.17 7.76 -51.93 -0.40 0.77 16 5 C 0.14 3.42 5.63 -2.53 -0.01 3.41 16 6 N -0.60 -15.58 3.39 -170.07 -0.58 -16.15 16 7 C -0.22 -6.14 10.27 -15.06 -0.15 -6.30 16 8 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 9 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 10 N -0.92 -26.66 10.09 55.49 0.56 -26.10 16 11 Si 0.92 22.06 29.55 -169.99 -5.02 17.03 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 C 0.13 2.89 6.98 -3.07 -0.02 2.87 16 16 C 0.14 2.73 2.99 -65.96 -0.20 2.54 16 17 H 0.10 2.14 7.70 -51.93 -0.40 1.74 16 18 N -0.71 -11.24 5.12 -53.24 -0.27 -11.51 16 19 C 0.60 9.95 7.78 -12.90 -0.10 9.85 16 20 O -0.55 -10.82 15.44 5.17 0.08 -10.74 16 21 C -0.30 -4.29 6.17 -104.68 -0.65 -4.93 16 22 C 0.12 1.40 11.44 -17.14 -0.20 1.20 16 23 N -0.32 -4.00 12.57 30.75 0.39 -3.62 16 24 N -0.27 -3.10 3.86 -10.55 -0.04 -3.14 16 25 C 0.11 0.81 11.18 -16.68 -0.19 0.62 16 26 C -0.16 -0.91 9.98 -39.95 -0.40 -1.31 16 27 C -0.08 -0.58 10.09 -39.51 -0.40 -0.98 16 28 C -0.10 -1.11 9.73 -39.53 -0.38 -1.50 16 29 C 0.16 2.09 6.76 -84.07 -0.57 1.53 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.03 0.42 8.11 -51.93 -0.42 0.00 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.11 2.99 5.87 -51.93 -0.30 2.68 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.03 0.64 8.03 -51.93 -0.42 0.23 16 38 H 0.39 5.02 7.45 -40.82 -0.30 4.71 16 39 H 0.20 1.61 7.46 -52.49 -0.39 1.22 16 40 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.16 0.33 8.06 -52.49 -0.42 -0.09 16 42 H 0.15 0.63 8.06 -52.49 -0.42 0.20 16 43 H 0.16 1.93 7.12 -52.48 -0.37 1.56 16 LS Contribution 362.71 15.07 5.47 5.47 Total: -1.00 -35.39 362.71 -7.65 -43.04 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.52 Total: 3.96 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: -2.34 Total: 9.16 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: 0.06 Total: -60.52 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.29 Total: -18.15 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.39 -7.65 -43.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082244981.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.120 kcal (2) G-P(sol) polarization free energy of solvation -35.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds