Wall clock time and date at job start Tue Mar 31 2020 06:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00403 * 2 1 4 4 H 1.08998 * 110.88442 * 32.42780 * 3 2 1 5 5 C 1.54917 * 111.00398 * 268.54749 * 3 2 1 6 6 N 1.47422 * 104.83074 * 204.87574 * 5 3 2 7 7 C 1.36938 * 125.64571 * 204.09198 * 6 5 3 8 8 H 1.07998 * 120.00058 * 180.02562 * 7 6 5 9 9 C 1.38814 * 119.99997 * 0.02987 * 7 6 5 10 10 N 1.31620 * 120.00091 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99701 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47071 * 89.99686 * 11 9 7 13 13 H 1.48497 * 109.47157 * 209.99349 * 11 9 7 14 14 H 1.48494 * 109.47207 * 329.99972 * 11 9 7 15 15 C 1.47020 * 108.70191 * 24.12901 * 6 5 3 16 16 C 1.54316 * 107.27568 * 358.94070 * 15 6 5 17 17 H 1.09003 * 110.72351 * 96.16743 * 16 15 6 18 18 N 1.46500 * 110.72232 * 219.44595 * 16 15 6 19 19 C 1.34778 * 119.99379 * 268.51936 * 18 16 15 20 20 O 1.21586 * 120.00644 * 0.02562 * 19 18 16 21 21 C 1.47581 * 119.99435 * 179.97438 * 19 18 16 22 22 C 1.41751 * 120.01627 * 359.97438 * 21 19 18 23 23 C 1.35627 * 119.54395 * 180.02562 * 22 21 19 24 24 C 1.41175 * 119.50852 * 0.02562 * 23 22 21 25 25 N 1.32418 * 132.12680 * 180.02562 * 24 23 22 26 26 C 1.33591 * 109.22757 * 179.97438 * 25 24 23 27 27 C 1.34996 * 108.66187 * 359.97438 * 26 25 24 28 28 N 1.37011 * 107.14084 * 0.02562 * 27 26 25 29 29 C 1.35918 * 132.41468 * 180.32422 * 28 27 26 30 30 H 1.08995 * 109.47537 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46919 * 300.00196 * 1 2 3 32 32 H 1.08999 * 109.47310 * 59.99456 * 1 2 3 33 33 H 1.08998 * 110.36726 * 323.71587 * 5 3 2 34 34 H 1.09005 * 110.36534 * 86.04108 * 5 3 2 35 35 H 0.96998 * 119.99446 * 180.02562 * 10 9 7 36 36 H 1.09000 * 109.88493 * 239.51822 * 15 6 5 37 37 H 1.09005 * 110.00581 * 118.43132 * 15 6 5 38 38 H 0.97001 * 120.00302 * 88.51904 * 18 16 15 39 39 H 1.08002 * 120.22846 * 359.97438 * 22 21 19 40 40 H 1.08001 * 120.24765 * 180.02562 * 23 22 21 41 41 H 1.08004 * 125.66637 * 179.97438 * 26 25 24 42 42 H 1.07999 * 126.43087 * 179.97438 * 27 26 25 43 43 H 1.08004 * 119.75797 * 359.91433 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3831 2.0100 0.5461 5 6 2.2697 1.7977 -1.4458 6 7 3.3606 2.7813 -1.3195 7 6 3.6227 3.7994 -2.1969 8 1 4.4496 4.4698 -2.0147 9 6 2.8254 3.9700 -3.3204 10 7 1.8179 3.1527 -3.5426 11 14 3.1826 5.3593 -4.5168 12 1 4.1233 4.8827 -5.5624 13 1 1.9164 5.8012 -5.1545 14 1 3.7921 6.4985 -3.7848 15 6 4.1210 2.4873 -0.0960 16 6 3.4486 1.2747 0.5813 17 1 3.9556 0.3495 0.3072 18 7 3.4231 1.4420 2.0365 19 6 4.4338 0.9618 2.7877 20 8 5.3669 0.3902 2.2577 21 6 4.4084 1.1308 4.2536 22 6 3.3214 1.7985 4.8717 23 6 3.3081 1.9490 6.2195 24 6 4.3777 1.4385 6.9867 25 7 4.6182 1.4431 8.2889 26 6 5.7791 0.8253 8.5240 27 6 6.2957 0.4140 7.3466 28 7 5.4190 0.7959 6.3655 29 6 5.4295 0.6403 5.0153 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 2.5795 0.9669 -2.0796 34 1 1.3760 2.2725 -1.8509 35 1 1.2611 3.2717 -4.3279 36 1 4.0942 3.3475 0.5728 37 1 5.1537 2.2458 -0.3478 38 1 2.6788 1.8983 2.4593 39 1 2.5099 2.1856 4.2733 40 1 2.4855 2.4555 6.7023 41 1 6.2293 0.6791 9.4948 42 1 7.2260 -0.1159 7.2046 43 1 6.2537 0.1280 4.5411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082320818.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:15 Heat of formation + Delta-G solvation = 54.171774 kcal Electronic energy + Delta-G solvation = -27657.163805 eV Core-core repulsion = 23705.400754 eV Total energy + Delta-G solvation = -3951.763051 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.14390 -40.09517 -38.36949 -37.12024 -35.97739 -34.47494 -33.84533 -31.95341 -30.78183 -29.10435 -28.83473 -27.25182 -26.16413 -24.93347 -23.87799 -23.43614 -22.09602 -21.11960 -20.66891 -20.02766 -18.52477 -17.74450 -16.98512 -16.75297 -16.55612 -16.27070 -15.58593 -15.38829 -14.90984 -14.80069 -14.74102 -14.43008 -14.31555 -14.06613 -13.89058 -13.39769 -13.26923 -12.95492 -12.32829 -12.14383 -12.08208 -11.88831 -11.53825 -11.40477 -11.35049 -11.07075 -10.89118 -10.86433 -10.48530 -10.26492 -10.10714 -9.95783 -9.85552 -9.28077 -9.15451 -8.79992 -8.75262 -8.23869 -6.96405 -5.75208 -3.18455 0.23848 0.73026 2.10730 2.28563 2.87312 3.11510 3.35635 3.38941 3.41044 3.42402 3.84739 4.05121 4.18382 4.29898 4.42325 4.48836 4.55587 4.95428 4.98903 5.09838 5.15697 5.36324 5.44822 5.47043 5.54854 5.56519 5.61370 5.63115 5.68536 5.78560 5.91902 5.99229 6.03019 6.11641 6.24508 6.33116 6.58972 6.61467 6.77415 7.18585 7.44520 7.48843 7.52053 7.66717 7.72656 8.12787 8.21742 9.10296 9.70613 10.32398 11.28660 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.018849 B = 0.002625 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.097459 B =10663.341706 C =11350.248406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.381 6.381 3 C 0.054 3.946 4 H 0.067 0.933 5 C 0.140 3.860 6 N -0.600 5.600 7 C -0.224 4.224 8 H 0.080 0.920 9 C -0.010 4.010 10 N -0.923 5.923 11 Si 0.917 3.083 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.130 3.870 16 C 0.137 3.863 17 H 0.107 0.893 18 N -0.704 5.704 19 C 0.570 3.430 20 O -0.535 6.535 21 C -0.154 4.154 22 C -0.078 4.078 23 C -0.082 4.082 24 C 0.231 3.769 25 N -0.493 5.493 26 C 0.033 3.967 27 C -0.095 4.095 28 N -0.367 5.367 29 C 0.132 3.868 30 H 0.078 0.922 31 H 0.034 0.966 32 H 0.048 0.952 33 H 0.027 0.973 34 H 0.113 0.887 35 H 0.254 0.746 36 H 0.031 0.969 37 H 0.035 0.965 38 H 0.398 0.602 39 H 0.147 0.853 40 H 0.157 0.843 41 H 0.183 0.817 42 H 0.186 0.814 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.251 -5.452 19.655 20.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.299 6.299 3 C -0.005 4.005 4 H 0.085 0.915 5 C 0.014 3.986 6 N -0.328 5.328 7 C -0.352 4.352 8 H 0.098 0.902 9 C -0.205 4.205 10 N -0.571 5.571 11 Si 0.748 3.252 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.032 3.968 17 H 0.125 0.875 18 N -0.354 5.354 19 C 0.356 3.644 20 O -0.413 6.413 21 C -0.161 4.161 22 C -0.102 4.102 23 C -0.102 4.102 24 C -0.013 4.013 25 N -0.213 5.213 26 C -0.117 4.117 27 C -0.224 4.224 28 N -0.039 5.039 29 C 0.006 3.994 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.045 0.955 34 H 0.131 0.869 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.234 0.766 39 H 0.165 0.835 40 H 0.175 0.825 41 H 0.200 0.800 42 H 0.203 0.797 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 1.511 -5.631 19.703 20.547 hybrid contribution 0.256 0.694 -0.993 1.238 sum 1.766 -4.937 18.710 19.431 Atomic orbital electron populations 1.22703 0.81456 1.01970 1.00078 1.87843 1.19347 1.27597 1.95141 1.24036 0.92031 0.83887 1.00593 0.91518 1.22343 0.95402 0.91917 0.88959 1.44297 1.31839 1.33167 1.23490 1.19090 1.11218 1.04190 1.00653 0.90167 1.24807 0.97987 0.99331 0.98397 1.69745 1.19953 1.38652 1.28781 0.86027 0.77101 0.81175 0.80923 1.21494 1.21600 1.20624 1.21603 0.95257 0.93522 0.89314 1.22212 0.96802 1.00702 0.77066 0.87515 1.45842 1.23350 1.58313 1.07861 1.17612 0.82775 0.78901 0.85150 1.90818 1.34257 1.42659 1.73558 1.19439 0.96734 1.05369 0.94539 1.21108 0.97518 0.97198 0.94362 1.20165 0.96728 1.00966 0.92367 1.21181 0.91218 0.99901 0.89006 1.70755 1.17125 1.22573 1.10818 1.22571 0.92559 0.98430 0.98173 1.22812 0.99789 1.12805 0.87024 1.42849 1.17893 1.37092 1.06111 1.21724 0.99951 0.97384 0.80308 0.90297 0.94764 0.93356 0.95479 0.86927 0.93553 0.95137 0.94739 0.76628 0.83540 0.82501 0.79967 0.79671 0.80283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.89 101.05 1.10 1.57 16 2 O -0.38 -6.63 10.52 -35.23 -0.37 -7.00 16 3 C 0.05 0.98 3.12 -24.58 -0.08 0.90 16 4 H 0.07 1.10 7.77 -51.93 -0.40 0.70 16 5 C 0.14 3.26 5.62 -2.53 -0.01 3.25 16 6 N -0.60 -14.88 3.39 -170.07 -0.58 -15.46 16 7 C -0.22 -6.05 10.27 -15.06 -0.15 -6.20 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 10 N -0.92 -25.96 10.09 55.49 0.56 -25.40 16 11 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 C 0.13 2.69 6.99 -3.07 -0.02 2.67 16 16 C 0.14 2.42 3.05 -66.10 -0.20 2.22 16 17 H 0.11 2.09 7.55 -51.93 -0.39 1.70 16 18 N -0.70 -9.68 5.05 -53.06 -0.27 -9.94 16 19 C 0.57 8.01 7.76 -12.45 -0.10 7.91 16 20 O -0.54 -9.33 15.92 5.29 0.08 -9.25 16 21 C -0.15 -1.71 5.84 -105.37 -0.61 -2.33 16 22 C -0.08 -0.69 9.53 -39.17 -0.37 -1.07 16 23 C -0.08 -0.76 10.09 -39.40 -0.40 -1.16 16 24 C 0.23 2.66 7.81 -155.92 -1.22 1.44 16 25 N -0.49 -5.99 11.31 -12.72 -0.14 -6.13 16 26 C 0.03 0.30 11.82 -17.94 -0.21 0.09 16 27 C -0.09 -0.82 11.75 -16.39 -0.19 -1.01 16 28 N -0.37 -3.89 2.93 -62.30 -0.18 -4.07 16 29 C 0.13 1.39 10.49 -16.36 -0.17 1.22 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.03 0.39 8.11 -51.93 -0.42 -0.03 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.11 2.91 5.88 -51.93 -0.31 2.61 16 35 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.03 0.61 8.03 -51.93 -0.42 0.19 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.40 4.29 6.59 -40.82 -0.27 4.02 16 39 H 0.15 0.93 6.44 -52.49 -0.34 0.59 16 40 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.18 1.06 8.06 -52.48 -0.42 0.64 16 42 H 0.19 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.18 1.69 7.56 -52.48 -0.40 1.30 16 LS Contribution 361.43 15.07 5.45 5.45 Total: -1.00 -33.77 361.43 -8.66 -42.43 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -5.45 Total: 3.75 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: -2.74 Total: 9.14 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -0.61 Total: -61.00 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.29 Total: -16.25 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.77 -8.66 -42.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082320818.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.601 kcal (2) G-P(sol) polarization free energy of solvation -33.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds