Wall clock time and date at job start Tue Mar 31 2020 06:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00244 * 2 1 4 4 H 1.09000 * 110.63878 * 26.85383 * 3 2 1 5 5 C 1.54336 * 111.00042 * 263.78013 * 3 2 1 6 6 N 1.47021 * 107.26378 * 219.59922 * 5 3 2 7 7 C 1.36930 * 125.64701 * 178.85098 * 6 5 3 8 8 H 1.08001 * 120.00119 * 189.75453 * 7 6 5 9 9 C 1.38810 * 119.99961 * 9.75277 * 7 6 5 10 10 N 1.31631 * 119.99846 * 195.14253 * 9 7 6 11 11 Si 1.86798 * 120.00326 * 15.13878 * 9 7 6 12 12 H 1.48505 * 109.47267 * 174.49184 * 11 9 7 13 13 H 1.48507 * 109.46844 * 54.49250 * 11 9 7 14 14 H 1.48496 * 109.47237 * 294.49670 * 11 9 7 15 15 C 1.47425 * 108.70462 * 358.58474 * 6 5 3 16 16 C 1.54912 * 104.83156 * 24.35748 * 15 6 5 17 17 H 1.08997 * 111.00807 * 81.06150 * 16 15 6 18 18 N 1.46497 * 111.00379 * 204.91948 * 16 15 6 19 19 C 1.34785 * 119.99606 * 273.54230 * 18 16 15 20 20 O 1.21660 * 119.99806 * 0.02562 * 19 18 16 21 21 C 1.46925 * 119.99647 * 180.02562 * 19 18 16 22 22 C 1.36351 * 126.83292 * 359.68491 * 21 19 18 23 23 N 1.35572 * 109.75199 * 179.82643 * 22 21 19 24 24 H 0.97003 * 124.72028 * 180.19868 * 23 22 21 25 25 C 1.37698 * 110.56090 * 0.45868 * 23 22 21 26 26 N 1.32665 * 132.94888 * 179.68829 * 25 23 22 27 27 C 1.31616 * 121.68972 * 180.02562 * 26 25 23 28 28 C 1.38577 * 121.53942 * 0.02562 * 27 26 25 29 29 C 1.38337 * 119.33115 * 359.92994 * 28 27 26 30 30 C 1.39352 * 118.04906 * 0.10188 * 29 28 27 31 31 H 1.08999 * 109.47126 * 300.00482 * 1 2 3 32 32 H 1.09000 * 109.47149 * 59.99836 * 1 2 3 33 33 H 1.08999 * 109.47287 * 179.97438 * 1 2 3 34 34 H 1.09008 * 109.99015 * 100.12321 * 5 3 2 35 35 H 1.08998 * 109.77984 * 338.95447 * 5 3 2 36 36 H 0.96996 * 119.99667 * 2.97181 * 10 9 7 37 37 H 1.08997 * 110.36537 * 143.19228 * 15 6 5 38 38 H 1.08997 * 110.36694 * 265.52137 * 15 6 5 39 39 H 0.97002 * 120.00823 * 93.54760 * 18 16 15 40 40 H 1.08006 * 125.12213 * 0.02562 * 22 21 19 41 41 H 1.07998 * 119.22930 * 179.97438 * 27 26 25 42 42 H 1.08002 * 120.33653 * 179.97438 * 28 27 26 43 43 H 1.07998 * 120.97790 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3352 2.0266 0.4608 5 6 2.3779 1.7472 -1.4324 6 7 3.6670 2.4499 -1.3549 7 6 4.3517 2.9803 -2.4155 8 1 5.3619 3.3380 -2.2816 9 6 3.7475 3.0581 -3.6628 10 7 4.4777 3.2811 -4.7351 11 14 1.8982 2.8464 -3.8197 12 1 1.4877 3.1041 -5.2234 13 1 1.2118 3.8070 -2.9189 14 1 1.5249 1.4598 -3.4413 15 6 4.0971 2.4947 0.0544 16 6 3.3817 1.2958 0.7257 17 1 3.9171 0.3654 0.5365 18 7 3.2164 1.5211 2.1637 19 6 4.2042 1.1840 3.0165 20 8 5.2332 0.6930 2.5920 21 6 4.0381 1.4094 4.4589 22 6 2.9535 1.9521 5.0819 23 7 3.1676 1.9952 6.4199 24 1 2.5346 2.3383 7.0699 25 6 4.4109 1.4894 6.7272 26 7 5.0640 1.3289 7.8707 27 6 6.2729 0.8098 7.9096 28 6 6.9252 0.4048 6.7560 29 6 6.2924 0.5470 5.5341 30 6 5.0133 1.0999 5.5191 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6128 2.4181 -1.8233 35 1 2.4707 0.8724 -2.0758 36 1 5.4424 3.3480 -4.6595 37 1 5.1786 2.3788 0.1248 38 1 3.7841 3.4306 0.5171 39 1 2.3961 1.9128 2.5023 40 1 2.0574 2.2931 4.5846 41 1 6.7683 0.6977 8.8626 42 1 7.9174 -0.0184 6.8104 43 1 6.7759 0.2399 4.6186 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082376613.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:43 Heat of formation + Delta-G solvation = 40.421458 kcal Electronic energy + Delta-G solvation = -27843.247136 eV Core-core repulsion = 23890.887827 eV Total energy + Delta-G solvation = -3952.359309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.96926 -39.71432 -38.43782 -37.99874 -36.22597 -34.21757 -33.16991 -32.09768 -30.62259 -29.89602 -28.88411 -27.82799 -26.37657 -24.27847 -24.05995 -22.85106 -22.77632 -21.16850 -20.35911 -19.81475 -18.81202 -17.61419 -17.24518 -16.72446 -16.58235 -16.20533 -16.02007 -15.58886 -15.07335 -14.95843 -14.73105 -14.53180 -14.17724 -13.92450 -13.55639 -13.35704 -13.23106 -13.12856 -12.74283 -12.63992 -12.32459 -12.13477 -11.92414 -11.83279 -11.27698 -11.14764 -10.68932 -10.61896 -10.13455 -10.05675 -9.85629 -9.60896 -9.26748 -9.06706 -8.94702 -8.85139 -8.64514 -8.40909 -7.08553 -6.32347 -3.23706 0.60099 1.03356 1.76190 2.30937 3.12222 3.34170 3.38009 3.43416 3.67236 3.69893 3.80607 4.13914 4.25776 4.42874 4.59635 4.69576 4.75473 4.90455 4.92924 5.04226 5.13862 5.17398 5.25173 5.29610 5.35630 5.43891 5.48621 5.56464 5.65007 5.79530 5.84055 5.95779 6.05092 6.12588 6.16821 6.36510 6.50243 6.53829 6.55750 6.72371 6.80662 7.32812 7.57630 7.61928 7.66313 8.31407 8.34614 9.02727 9.52634 10.17653 11.18841 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.019853 B = 0.002893 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.006167 B = 9676.616700 C =10496.271865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.072 3.928 4 H 0.072 0.928 5 C 0.095 3.905 6 N -0.606 5.606 7 C -0.321 4.321 8 H 0.082 0.918 9 C -0.022 4.022 10 N -0.927 5.927 11 Si 1.069 2.931 12 H -0.300 1.300 13 H -0.299 1.299 14 H -0.284 1.284 15 C 0.131 3.869 16 C 0.138 3.862 17 H 0.110 0.890 18 N -0.715 5.715 19 C 0.589 3.411 20 O -0.533 6.533 21 C -0.209 4.209 22 C 0.115 3.885 23 N -0.566 5.566 24 H 0.424 0.576 25 C 0.276 3.724 26 N -0.499 5.499 27 C 0.136 3.864 28 C -0.197 4.197 29 C -0.016 4.016 30 C -0.109 4.109 31 H 0.038 0.962 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.033 0.967 35 H 0.063 0.937 36 H 0.263 0.737 37 H 0.058 0.942 38 H 0.028 0.972 39 H 0.393 0.607 40 H 0.187 0.813 41 H 0.162 0.838 42 H 0.140 0.860 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.597 -4.504 25.493 26.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C 0.013 3.987 4 H 0.090 0.910 5 C -0.031 4.031 6 N -0.335 5.335 7 C -0.448 4.448 8 H 0.099 0.901 9 C -0.221 4.221 10 N -0.568 5.568 11 Si 0.903 3.097 12 H -0.228 1.228 13 H -0.228 1.228 14 H -0.211 1.211 15 C 0.004 3.996 16 C 0.033 3.967 17 H 0.127 0.873 18 N -0.366 5.366 19 C 0.377 3.623 20 O -0.410 6.410 21 C -0.221 4.221 22 C -0.017 4.017 23 N -0.171 5.171 24 H 0.262 0.738 25 C 0.044 3.956 26 N -0.212 5.212 27 C -0.030 4.030 28 C -0.219 4.219 29 C -0.043 4.043 30 C -0.116 4.116 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.045 0.955 39 H 0.227 0.773 40 H 0.204 0.796 41 H 0.179 0.821 42 H 0.158 0.842 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.460 -4.666 24.828 26.341 hybrid contribution 0.586 0.480 0.869 1.153 sum -6.874 -4.186 25.697 26.928 Atomic orbital electron populations 1.22798 0.81397 1.02618 0.99898 1.87961 1.19371 1.26965 1.94889 1.23408 0.93860 0.84595 0.96830 0.90964 1.22413 0.89572 0.96568 0.94503 1.44609 1.20773 1.65846 1.02305 1.20188 0.97729 1.39456 0.87468 0.90071 1.25825 1.06601 0.99008 0.90701 1.70894 1.07097 1.50575 1.28221 0.83868 0.75952 0.76131 0.73772 1.22793 1.22799 1.21139 1.21865 0.98578 0.93831 0.85373 1.22334 0.95422 1.01304 0.77672 0.87255 1.45687 1.19020 1.64852 1.07012 1.17111 0.83359 0.77775 0.84069 1.90801 1.27765 1.43962 1.78452 1.20055 0.95982 1.13097 0.92944 1.22145 0.99301 0.98226 0.82018 1.41268 1.14343 1.54003 1.07501 0.73791 1.18334 0.87423 0.99397 0.90418 1.66481 1.09996 1.17741 1.26952 1.22465 0.88619 0.93145 0.98724 1.21991 1.02164 1.04781 0.92923 1.21215 0.91769 0.92279 0.99010 1.19430 0.95755 1.04046 0.92333 0.94320 0.93805 0.89690 0.94948 0.91955 0.92730 0.92332 0.95451 0.77331 0.79638 0.82063 0.84187 0.83556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.85 101.05 1.10 1.44 16 2 O -0.37 -5.95 10.45 -35.23 -0.37 -6.32 16 3 C 0.07 1.20 3.05 -24.89 -0.08 1.12 16 4 H 0.07 0.99 7.68 -51.93 -0.40 0.59 16 5 C 0.10 2.07 4.40 -3.06 -0.01 2.05 16 6 N -0.61 -14.99 3.33 -170.07 -0.57 -15.56 16 7 C -0.32 -9.32 10.56 -15.06 -0.16 -9.48 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.06 16 9 C -0.02 -0.65 5.50 -17.43 -0.10 -0.75 16 10 N -0.93 -29.36 13.71 55.49 0.76 -28.60 16 11 Si 1.07 26.62 24.52 -169.99 -4.17 22.45 16 12 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 13 H -0.30 -7.04 6.82 56.52 0.39 -6.66 16 14 H -0.28 -6.50 5.41 56.52 0.31 -6.19 16 15 C 0.13 2.70 6.93 -2.53 -0.02 2.68 16 16 C 0.14 2.38 3.04 -65.78 -0.20 2.18 16 17 H 0.11 2.16 7.73 -51.93 -0.40 1.76 16 18 N -0.72 -9.45 5.22 -52.96 -0.28 -9.73 16 19 C 0.59 8.74 7.80 -12.74 -0.10 8.64 16 20 O -0.53 -10.06 16.00 5.22 0.08 -9.98 16 21 C -0.21 -2.50 6.27 -103.36 -0.65 -3.15 16 22 C 0.12 0.88 11.33 -16.58 -0.19 0.69 16 23 N -0.57 -4.37 5.97 -11.97 -0.07 -4.44 16 24 H 0.42 1.91 8.96 -40.82 -0.37 1.55 16 25 C 0.28 3.09 8.41 -155.53 -1.31 1.78 16 26 N -0.50 -5.51 10.39 -12.29 -0.13 -5.64 16 27 C 0.14 1.22 11.15 -17.52 -0.20 1.02 16 28 C -0.20 -1.80 10.10 -39.42 -0.40 -2.20 16 29 C -0.02 -0.19 9.97 -39.13 -0.39 -0.58 16 30 C -0.11 -1.38 6.28 -104.93 -0.66 -2.04 16 31 H 0.04 0.35 8.11 -51.93 -0.42 -0.07 16 32 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.03 0.73 3.89 -51.92 -0.20 0.53 16 35 H 0.06 1.47 6.62 -51.93 -0.34 1.13 16 36 H 0.26 8.25 8.73 -40.82 -0.36 7.89 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.39 3.63 7.40 -40.82 -0.30 3.33 16 40 H 0.19 0.59 7.38 -52.48 -0.39 0.21 16 41 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 43 H 0.15 1.83 7.55 -52.49 -0.40 1.44 16 LS Contribution 355.35 15.07 5.36 5.36 Total: -1.00 -38.17 355.35 -8.17 -46.34 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.44 Total: 2.72 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -3.35 Total: 3.41 kcal Atomic # 7 Polarization: -63.69 SS G_CDS: -0.28 Total: -63.97 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.28 Total: -16.30 kcal Atomic # 14 Polarization: 26.62 SS G_CDS: -4.17 Total: 22.45 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -38.17 -8.17 -46.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082376613.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.762 kcal (2) G-P(sol) polarization free energy of solvation -38.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds