Wall clock time and date at job start Tue Mar 31 2020 06:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00244 * 2 1 4 4 H 1.09000 * 110.63878 * 26.85383 * 3 2 1 5 5 C 1.54336 * 111.00042 * 263.78013 * 3 2 1 6 6 N 1.47021 * 107.26378 * 219.59922 * 5 3 2 7 7 C 1.36930 * 125.64701 * 178.85098 * 6 5 3 8 8 H 1.08001 * 120.00119 * 189.75453 * 7 6 5 9 9 C 1.38810 * 119.99961 * 9.75277 * 7 6 5 10 10 N 1.31631 * 119.99846 * 195.14253 * 9 7 6 11 11 Si 1.86798 * 120.00326 * 15.13878 * 9 7 6 12 12 H 1.48505 * 109.47267 * 174.49184 * 11 9 7 13 13 H 1.48507 * 109.46844 * 54.49250 * 11 9 7 14 14 H 1.48496 * 109.47237 * 294.49670 * 11 9 7 15 15 C 1.47425 * 108.70462 * 358.58474 * 6 5 3 16 16 C 1.54912 * 104.83156 * 24.35748 * 15 6 5 17 17 H 1.08997 * 111.00807 * 81.06150 * 16 15 6 18 18 N 1.46497 * 111.00379 * 204.91948 * 16 15 6 19 19 C 1.34785 * 119.99606 * 273.54230 * 18 16 15 20 20 O 1.21660 * 119.99806 * 0.02562 * 19 18 16 21 21 C 1.46925 * 119.99647 * 180.02562 * 19 18 16 22 22 C 1.36351 * 126.83292 * 359.68491 * 21 19 18 23 23 N 1.35572 * 109.75199 * 179.82643 * 22 21 19 24 24 H 0.97003 * 124.72028 * 180.19868 * 23 22 21 25 25 C 1.37698 * 110.56090 * 0.45868 * 23 22 21 26 26 N 1.32665 * 132.94888 * 179.68829 * 25 23 22 27 27 C 1.31616 * 121.68972 * 180.02562 * 26 25 23 28 28 C 1.38577 * 121.53942 * 0.02562 * 27 26 25 29 29 C 1.38337 * 119.33115 * 359.92994 * 28 27 26 30 30 C 1.39352 * 118.04906 * 0.10188 * 29 28 27 31 31 H 1.08999 * 109.47126 * 300.00482 * 1 2 3 32 32 H 1.09000 * 109.47149 * 59.99836 * 1 2 3 33 33 H 1.08999 * 109.47287 * 179.97438 * 1 2 3 34 34 H 1.09008 * 109.99015 * 100.12321 * 5 3 2 35 35 H 1.08998 * 109.77984 * 338.95447 * 5 3 2 36 36 H 0.96996 * 119.99667 * 2.97181 * 10 9 7 37 37 H 1.08997 * 110.36537 * 143.19228 * 15 6 5 38 38 H 1.08997 * 110.36694 * 265.52137 * 15 6 5 39 39 H 0.97002 * 120.00823 * 93.54760 * 18 16 15 40 40 H 1.08006 * 125.12213 * 0.02562 * 22 21 19 41 41 H 1.07998 * 119.22930 * 179.97438 * 27 26 25 42 42 H 1.08002 * 120.33653 * 179.97438 * 28 27 26 43 43 H 1.07998 * 120.97790 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3352 2.0266 0.4608 5 6 2.3779 1.7472 -1.4324 6 7 3.6670 2.4499 -1.3549 7 6 4.3517 2.9803 -2.4155 8 1 5.3619 3.3380 -2.2816 9 6 3.7475 3.0581 -3.6628 10 7 4.4777 3.2811 -4.7351 11 14 1.8982 2.8464 -3.8197 12 1 1.4877 3.1041 -5.2234 13 1 1.2118 3.8070 -2.9189 14 1 1.5249 1.4598 -3.4413 15 6 4.0971 2.4947 0.0544 16 6 3.3817 1.2958 0.7257 17 1 3.9171 0.3654 0.5365 18 7 3.2164 1.5211 2.1637 19 6 4.2042 1.1840 3.0165 20 8 5.2332 0.6930 2.5920 21 6 4.0381 1.4094 4.4589 22 6 2.9535 1.9521 5.0819 23 7 3.1676 1.9952 6.4199 24 1 2.5346 2.3383 7.0699 25 6 4.4109 1.4894 6.7272 26 7 5.0640 1.3289 7.8707 27 6 6.2729 0.8098 7.9096 28 6 6.9252 0.4048 6.7560 29 6 6.2924 0.5470 5.5341 30 6 5.0133 1.0999 5.5191 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6128 2.4181 -1.8233 35 1 2.4707 0.8724 -2.0758 36 1 5.4424 3.3480 -4.6595 37 1 5.1786 2.3788 0.1248 38 1 3.7841 3.4306 0.5171 39 1 2.3961 1.9128 2.5023 40 1 2.0574 2.2931 4.5846 41 1 6.7683 0.6977 8.8626 42 1 7.9174 -0.0184 6.8104 43 1 6.7759 0.2399 4.6186 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082376613.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:42 Heat of formation + Delta-G solvation = 9.178301 kcal Electronic energy + Delta-G solvation = -27844.601940 eV Core-core repulsion = 23890.887827 eV Total energy + Delta-G solvation = -3953.714114 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.72002 -41.00109 -39.63183 -38.81886 -37.67020 -35.69380 -34.16215 -33.89603 -31.58847 -30.91849 -30.22379 -29.30557 -27.45851 -25.86432 -24.81701 -24.08957 -23.50321 -22.78980 -21.94970 -20.92094 -19.75821 -19.48169 -18.25264 -17.97083 -17.59511 -17.29634 -16.97416 -16.46480 -16.18816 -16.12773 -15.86471 -15.71896 -15.52153 -15.33383 -15.00522 -14.81802 -14.43355 -14.21616 -13.92083 -13.71645 -13.56000 -13.35061 -13.30692 -13.01445 -12.99898 -12.39326 -12.30714 -11.75014 -11.54234 -11.45721 -11.23958 -11.18920 -10.95887 -10.56629 -10.44143 -10.15101 -9.58209 -9.21235 -9.14894 -8.70087 -5.52974 -0.15537 0.26524 0.91636 1.37574 1.49109 1.66897 1.70252 1.99510 2.36127 2.54384 2.60403 2.88590 3.08596 3.31614 3.44580 3.50004 3.62346 3.70913 3.73690 3.89998 4.01550 4.14323 4.19357 4.30035 4.36519 4.43605 4.48830 4.54030 4.61102 4.67492 4.78574 4.81497 4.84688 4.92930 4.97442 5.19159 5.29982 5.34313 5.37278 5.49790 5.81051 6.03284 6.20877 6.24449 6.59047 6.76272 6.93596 7.28472 7.36379 7.99828 8.82699 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.019853 B = 0.002893 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.006167 B = 9676.616700 C =10496.271865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.393 6.393 3 C 0.093 3.907 4 H 0.120 0.880 5 C 0.085 3.915 6 N -0.627 5.627 7 C -0.317 4.317 8 H 0.042 0.958 9 C -0.081 4.081 10 N -0.961 5.961 11 Si 1.110 2.890 12 H -0.310 1.310 13 H -0.268 1.268 14 H -0.253 1.253 15 C 0.130 3.870 16 C 0.155 3.845 17 H 0.076 0.924 18 N -0.695 5.695 19 C 0.589 3.411 20 O -0.589 6.589 21 C -0.261 4.261 22 C 0.168 3.832 23 N -0.548 5.548 24 H 0.443 0.557 25 C 0.259 3.741 26 N -0.508 5.508 27 C 0.131 3.869 28 C -0.186 4.186 29 C -0.052 4.052 30 C -0.135 4.135 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.100 0.900 34 H 0.043 0.957 35 H 0.038 0.962 36 H 0.246 0.754 37 H 0.025 0.975 38 H 0.050 0.950 39 H 0.418 0.582 40 H 0.242 0.758 41 H 0.199 0.801 42 H 0.166 0.834 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.922 -4.236 29.168 31.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.312 6.312 3 C 0.034 3.966 4 H 0.138 0.862 5 C -0.040 4.040 6 N -0.356 5.356 7 C -0.445 4.445 8 H 0.060 0.940 9 C -0.273 4.273 10 N -0.605 5.605 11 Si 0.936 3.064 12 H -0.239 1.239 13 H -0.195 1.195 14 H -0.178 1.178 15 C 0.003 3.997 16 C 0.048 3.952 17 H 0.094 0.906 18 N -0.347 5.347 19 C 0.380 3.620 20 O -0.470 6.470 21 C -0.272 4.272 22 C 0.033 3.967 23 N -0.154 5.154 24 H 0.285 0.715 25 C 0.027 3.973 26 N -0.222 5.222 27 C -0.034 4.034 28 C -0.207 4.207 29 C -0.078 4.078 30 C -0.142 4.142 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.119 0.881 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.043 0.957 38 H 0.068 0.932 39 H 0.256 0.744 40 H 0.258 0.742 41 H 0.215 0.785 42 H 0.184 0.816 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.832 -4.393 28.619 31.278 hybrid contribution 2.052 0.369 -0.149 2.090 sum -9.780 -4.025 28.470 30.371 Atomic orbital electron populations 1.23151 0.78740 1.04384 1.01594 1.87960 1.22260 1.26204 1.94751 1.23167 0.94007 0.86252 0.93175 0.86216 1.22579 0.88002 0.95377 0.98077 1.44597 1.22155 1.65973 1.02854 1.20047 0.96624 1.38499 0.89326 0.93955 1.27318 1.10829 0.98840 0.90321 1.71015 1.06269 1.53657 1.29542 0.83438 0.70655 0.78491 0.73839 1.23934 1.19507 1.17826 1.21953 0.97238 0.96452 0.84013 1.21746 0.95606 0.97943 0.79952 0.90626 1.45322 1.19868 1.64718 1.04837 1.17565 0.82537 0.76524 0.85391 1.90777 1.30102 1.46610 1.79541 1.19777 0.98388 1.17882 0.91144 1.22872 0.98848 0.93438 0.81501 1.41338 1.13449 1.52595 1.08058 0.71503 1.18530 0.88683 1.00184 0.89902 1.66586 1.10759 1.17991 1.26818 1.23098 0.88189 0.92109 0.99981 1.22297 1.02967 1.03396 0.91992 1.21273 0.92719 0.94434 0.99416 1.19770 0.96297 1.04526 0.93628 0.90803 0.93821 0.88126 0.93951 0.94401 0.94480 0.95658 0.93248 0.74354 0.74169 0.78460 0.81642 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.85 113.37 1.23 1.53 16 2 O -0.39 -11.15 10.45 -148.98 -1.56 -12.71 16 3 C 0.09 2.78 3.05 31.79 0.10 2.87 16 4 H 0.12 2.48 7.68 -2.39 -0.02 2.47 16 5 C 0.08 3.52 4.40 86.73 0.38 3.90 16 6 N -0.63 -31.33 3.33 -691.97 -2.30 -33.64 16 7 C -0.32 -19.15 10.56 84.03 0.89 -18.26 16 8 H 0.04 2.80 8.06 -2.91 -0.02 2.78 16 9 C -0.08 -4.93 5.50 84.86 0.47 -4.47 16 10 N -0.96 -63.56 13.71 21.65 0.30 -63.27 16 11 Si 1.11 53.10 24.52 68.60 1.68 54.78 16 12 H -0.31 -15.30 7.11 99.48 0.71 -14.60 16 13 H -0.27 -11.44 6.82 99.48 0.68 -10.77 16 14 H -0.25 -10.80 5.41 99.48 0.54 -10.27 16 15 C 0.13 5.43 6.93 86.86 0.60 6.03 16 16 C 0.15 5.20 3.04 46.38 0.14 5.34 16 17 H 0.08 3.09 7.73 -2.39 -0.02 3.07 16 18 N -0.70 -16.75 5.22 -439.68 -2.29 -19.04 16 19 C 0.59 17.35 7.80 86.52 0.67 18.03 16 20 O -0.59 -23.74 16.00 -4.22 -0.07 -23.80 16 21 C -0.26 -5.85 6.27 -19.05 -0.12 -5.97 16 22 C 0.17 1.81 11.33 83.67 0.95 2.76 16 23 N -0.55 -6.33 5.97 -191.80 -1.15 -7.47 16 24 H 0.44 1.89 8.96 -92.71 -0.83 1.06 16 25 C 0.26 5.29 8.41 133.76 1.13 6.42 16 26 N -0.51 -10.20 10.39 -192.80 -2.00 -12.21 16 27 C 0.13 2.11 11.15 84.81 0.95 3.05 16 28 C -0.19 -3.30 10.10 22.37 0.23 -3.08 16 29 C -0.05 -1.30 9.97 22.56 0.23 -1.08 16 30 C -0.14 -3.41 6.28 -20.06 -0.13 -3.54 16 31 H 0.07 0.84 8.11 -2.39 -0.02 0.82 16 32 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.04 1.73 3.89 -2.38 -0.01 1.72 16 35 H 0.04 1.76 6.62 -2.39 -0.02 1.74 16 36 H 0.25 16.48 8.73 -92.71 -0.81 15.67 16 37 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.42 5.58 7.40 -92.71 -0.69 4.89 16 40 H 0.24 -0.27 7.38 -2.91 -0.02 -0.29 16 41 H 0.20 1.55 8.06 -2.91 -0.02 1.53 16 42 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 43 H 0.12 3.54 7.55 -2.91 -0.02 3.52 16 Total: -1.00 -92.96 355.35 -0.36 -93.32 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -0.68 Total: 10.50 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 7.70 Total: 13.53 kcal Atomic # 7 Polarization: -128.17 SS G_CDS: -7.45 Total: -135.62 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -1.62 Total: -36.51 kcal Atomic # 14 Polarization: 53.10 SS G_CDS: 1.68 Total: 54.78 kcal Total: -92.96 -0.36 -93.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082376613.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.500 kcal (2) G-P(sol) polarization free energy of solvation -92.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds