Wall clock time and date at job start Tue Mar 31 2020 05:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40169 * 120.19381 * 2 1 4 4 C 1.35266 * 120.12439 * 180.02562 * 3 2 1 5 5 N 1.35953 * 120.63912 * 0.02562 * 4 3 2 6 6 C 1.36575 * 120.66775 * 359.96978 * 5 4 3 7 7 C 1.36288 * 120.19507 * 180.02562 * 2 1 3 8 8 N 1.33204 * 108.61031 * 180.02562 * 6 5 4 9 9 C 1.32327 * 109.81196 * 359.72584 * 8 6 5 10 10 C 1.38293 * 132.39614 * 180.02562 * 5 4 3 11 11 C 1.41809 * 126.78674 * 359.97436 * 10 5 4 12 12 O 1.21774 * 120.00543 * 5.37746 * 11 10 5 13 13 N 1.34777 * 120.00003 * 185.38609 * 11 10 5 14 14 C 1.46502 * 120.00516 * 174.94488 * 13 11 10 15 15 H 1.09002 * 110.91242 * 37.44638 * 14 13 11 16 16 C 1.54916 * 111.00309 * 273.54907 * 14 13 11 17 17 N 1.47421 * 104.82822 * 204.91368 * 16 14 13 18 18 C 1.36940 * 125.64383 * 204.16647 * 17 16 14 19 19 H 1.07998 * 120.00372 * 359.97438 * 18 17 16 20 20 C 1.38819 * 119.99598 * 179.97438 * 18 17 16 21 21 N 1.31620 * 120.00168 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99712 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47348 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47265 * 119.99946 * 22 20 18 25 25 H 1.48504 * 109.47119 * 240.00348 * 22 20 18 26 26 C 1.47019 * 108.70787 * 24.12252 * 17 16 14 27 27 C 1.54329 * 107.40048 * 358.87029 * 26 17 16 28 28 H 1.08998 * 110.71556 * 219.51826 * 27 26 17 29 29 O 1.42897 * 110.72252 * 96.23891 * 27 26 17 30 30 H 1.08997 * 109.47119 * 90.00014 * 1 2 3 31 31 H 1.09002 * 109.46891 * 210.00107 * 1 2 3 32 32 H 1.09001 * 109.46895 * 329.99988 * 1 2 3 33 33 H 1.07997 * 119.94256 * 0.02562 * 3 2 1 34 34 H 1.08002 * 119.68027 * 179.97438 * 4 3 2 35 35 H 1.07997 * 120.30643 * 359.97438 * 7 2 1 36 36 H 1.08002 * 125.89266 * 180.27144 * 9 8 6 37 37 H 0.97003 * 119.99826 * 354.95017 * 13 11 10 38 38 H 1.09001 * 110.36851 * 86.07412 * 16 14 13 39 39 H 1.08992 * 110.36303 * 323.74915 * 16 14 13 40 40 H 0.96997 * 119.99896 * 179.97438 * 21 20 18 41 41 H 1.09001 * 109.87902 * 118.35401 * 26 17 16 42 42 H 1.08994 * 109.88886 * 239.37272 * 26 17 16 43 43 H 0.96707 * 113.99907 * 61.45721 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2120 1.2115 0.0000 4 6 3.5646 1.2099 -0.0005 5 7 4.2561 0.0393 -0.0016 6 6 3.5989 -1.1579 -0.0015 7 6 2.1925 -1.1780 -0.0005 8 7 4.5010 -2.1380 -0.0021 9 6 5.7207 -1.6249 -0.0085 10 6 5.6096 -0.2441 -0.0018 11 6 6.6736 0.6934 -0.0015 12 8 6.4363 1.8837 0.0979 13 7 7.9474 0.2672 -0.1114 14 6 9.0381 1.2389 -0.2226 15 1 8.8489 2.1098 0.4051 16 6 9.2622 1.6558 -1.6977 17 7 10.6687 2.0933 -1.7566 18 6 11.1974 2.9584 -2.6771 19 1 10.5669 3.3814 -3.4452 20 6 12.5439 3.2917 -2.6230 21 7 13.3125 2.7758 -1.6873 22 14 13.2653 4.4712 -3.8791 23 1 12.2007 4.9056 -4.8188 24 1 13.8240 5.6568 -3.1810 25 1 14.3449 3.7884 -4.6364 26 6 11.4096 1.4479 -0.6630 27 6 10.4040 0.5874 0.1308 28 1 10.6002 0.6538 1.2009 29 8 10.4439 -0.7717 -0.3088 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6742 2.1481 0.0004 34 1 4.1005 2.1476 -0.0009 35 1 1.6607 -2.1179 -0.0005 36 1 6.6436 -2.1859 -0.0146 37 1 8.1421 -0.6831 -0.1169 38 1 8.5977 2.4776 -1.9648 39 1 9.1012 0.8058 -2.3606 40 1 14.2534 3.0084 -1.6497 41 1 12.1972 0.8149 -1.0719 42 1 11.8441 2.2060 -0.0115 43 1 11.3017 -1.2004 -0.1839 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083487989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:51 Heat of formation + Delta-G solvation = 37.020688 kcal Electronic energy + Delta-G solvation = -27723.680878 eV Core-core repulsion = 23771.174101 eV Total energy + Delta-G solvation = -3952.506777 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.10815 -39.62526 -38.12502 -37.74386 -34.86032 -34.59219 -33.89739 -31.90549 -31.00283 -30.26578 -28.69849 -27.72336 -26.59909 -24.56331 -23.94301 -23.39469 -21.66373 -20.92615 -20.45452 -19.91715 -18.38617 -17.28744 -17.16839 -16.70572 -16.51803 -16.34955 -15.34855 -15.31159 -14.85419 -14.75763 -14.53237 -14.19301 -14.03632 -13.91471 -13.79763 -13.16555 -12.93920 -12.77105 -12.61312 -12.47687 -12.26448 -12.10540 -11.99836 -11.32846 -10.99942 -10.87588 -10.86677 -10.60051 -10.53380 -10.38701 -10.11613 -9.85592 -9.81432 -9.35676 -9.16349 -8.79272 -8.67485 -8.03431 -6.89450 -5.76909 -3.09804 0.44620 0.58800 2.12555 2.17927 3.19124 3.36779 3.39107 3.44536 3.46476 3.50438 3.82653 4.24426 4.35089 4.43482 4.49463 4.57411 4.76436 4.86736 4.93474 5.13696 5.14694 5.25774 5.27184 5.34827 5.38690 5.52095 5.56012 5.66620 5.69698 5.85129 5.90128 6.04709 6.18861 6.20005 6.23769 6.55770 6.63464 6.71215 6.91299 7.30659 7.42171 7.47198 7.69987 7.75538 8.05753 8.17735 8.35683 9.16075 9.76030 10.40244 11.35471 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.022535 B = 0.002574 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.232773 B =10874.216487 C =11711.070029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.055 4.055 3 C -0.147 4.147 4 C 0.083 3.917 5 N -0.325 5.325 6 C 0.245 3.755 7 C -0.098 4.098 8 N -0.498 5.498 9 C 0.108 3.892 10 C -0.138 4.138 11 C 0.594 3.406 12 O -0.558 6.558 13 N -0.696 5.696 14 C 0.143 3.857 15 H 0.104 0.896 16 C 0.131 3.869 17 N -0.600 5.600 18 C -0.223 4.223 19 H 0.080 0.920 20 C -0.010 4.010 21 N -0.926 5.926 22 Si 0.915 3.085 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.153 3.847 27 C 0.068 3.932 28 H 0.063 0.937 29 O -0.568 6.568 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.155 0.845 34 H 0.179 0.821 35 H 0.154 0.846 36 H 0.192 0.808 37 H 0.408 0.592 38 H 0.044 0.956 39 H 0.027 0.973 40 H 0.252 0.748 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.680 -8.514 6.790 24.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.061 4.061 3 C -0.168 4.168 4 C -0.041 4.041 5 N 0.006 4.994 6 C 0.005 3.995 7 C -0.118 4.118 8 N -0.217 5.217 9 C -0.052 4.052 10 C -0.252 4.252 11 C 0.382 3.618 12 O -0.439 6.439 13 N -0.346 5.346 14 C 0.037 3.963 15 H 0.122 0.878 16 C 0.004 3.996 17 N -0.327 5.327 18 C -0.351 4.351 19 H 0.098 0.902 20 C -0.206 4.206 21 N -0.575 5.575 22 Si 0.745 3.255 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.028 3.972 27 C 0.008 3.992 28 H 0.081 0.919 29 O -0.375 6.375 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.173 0.827 34 H 0.196 0.804 35 H 0.171 0.829 36 H 0.209 0.791 37 H 0.244 0.756 38 H 0.062 0.938 39 H 0.045 0.955 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -22.372 -8.217 6.638 24.740 hybrid contribution 1.535 0.938 -0.526 1.874 sum -20.836 -7.280 6.112 22.902 Atomic orbital electron populations 1.20800 0.89386 1.03584 1.03117 1.19877 0.97240 0.92021 0.96983 1.20859 0.91901 0.99527 1.04465 1.22109 0.93014 0.89804 0.99217 1.42412 1.06476 1.07636 1.42921 1.21064 0.94515 0.80318 1.03603 1.20125 0.87984 0.99786 1.03878 1.70512 0.99012 1.28712 1.23449 1.23236 0.96634 0.89432 0.95918 1.19920 0.82665 0.96295 1.26357 1.15429 0.82254 0.86948 0.77149 1.90808 1.84388 1.16850 1.51833 1.45397 1.04696 1.11155 1.73388 1.22415 0.83185 0.91174 0.99523 0.87788 1.21837 0.87871 0.97333 0.92547 1.44284 1.02894 1.52452 1.33104 1.19138 0.92639 1.17614 1.05736 0.90224 1.24798 0.96181 1.00582 0.99011 1.69917 1.05488 1.47367 1.34681 0.85993 0.78903 0.80220 0.80365 1.20469 1.21709 1.21738 1.21883 0.91334 0.94589 0.89414 1.23546 0.96004 0.82483 0.97126 0.91899 1.86226 1.38512 1.25358 1.87393 0.90292 0.90795 0.90767 0.82724 0.80368 0.82864 0.79074 0.75595 0.93780 0.95537 0.93749 0.92845 0.92551 0.77059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.47 10.02 36.01 0.36 -0.11 16 2 C -0.05 -0.41 5.88 -104.60 -0.62 -1.03 16 3 C -0.15 -1.20 9.68 -39.92 -0.39 -1.58 16 4 C 0.08 0.95 10.51 -16.78 -0.18 0.77 16 5 N -0.32 -4.42 2.96 -60.14 -0.18 -4.60 16 6 C 0.24 3.16 7.77 -156.06 -1.21 1.94 16 7 C -0.10 -0.92 9.75 -39.37 -0.38 -1.30 16 8 N -0.50 -6.89 11.25 -12.27 -0.14 -7.03 16 9 C 0.11 1.40 11.32 -17.23 -0.20 1.20 16 10 C -0.14 -2.02 6.83 -83.48 -0.57 -2.59 16 11 C 0.59 9.80 7.59 -14.89 -0.11 9.69 16 12 O -0.56 -10.71 15.08 5.12 0.08 -10.64 16 13 N -0.70 -10.92 5.16 -54.42 -0.28 -11.20 16 14 C 0.14 2.64 3.24 -65.65 -0.21 2.43 16 15 H 0.10 2.04 7.66 -51.93 -0.40 1.64 16 16 C 0.13 2.89 6.92 -2.53 -0.02 2.88 16 17 N -0.60 -15.40 3.39 -170.07 -0.58 -15.97 16 18 C -0.22 -6.27 10.28 -15.06 -0.15 -6.42 16 19 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 20 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 21 N -0.93 -26.68 10.31 55.49 0.57 -26.11 16 22 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 C 0.15 3.54 5.13 -3.06 -0.02 3.53 16 27 C 0.07 1.21 4.22 -24.76 -0.10 1.10 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 O -0.57 -8.80 12.15 -35.23 -0.43 -9.23 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 32 H 0.07 0.23 8.10 -51.93 -0.42 -0.19 16 33 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.18 2.11 6.81 -52.49 -0.36 1.76 16 35 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.19 1.86 7.37 -52.49 -0.39 1.48 16 37 H 0.41 5.57 6.36 -40.82 -0.26 5.32 16 38 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.05 1.34 7.42 -51.93 -0.39 0.96 16 42 H 0.06 1.44 7.37 -51.93 -0.38 1.05 16 43 H 0.38 4.61 9.09 45.56 0.41 5.03 16 LS Contribution 358.90 15.07 5.41 5.41 Total: -1.00 -34.90 358.90 -9.14 -44.04 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -4.68 Total: 8.05 kcal Atomic # 6 Polarization: 14.02 SS G_CDS: -3.89 Total: 10.12 kcal Atomic # 7 Polarization: -64.31 SS G_CDS: -0.60 Total: -64.91 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.35 Total: -19.86 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.90 -9.14 -44.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083487989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.064 kcal (2) G-P(sol) polarization free energy of solvation -34.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds