Wall clock time and date at job start Tue Mar 31 2020 05:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40159 * 120.29374 * 2 1 4 4 C 1.35187 * 120.31560 * 179.97438 * 3 2 1 5 5 N 1.36248 * 120.71056 * 359.97438 * 4 3 2 6 6 N 1.40016 * 132.01241 * 180.02562 * 5 4 3 7 7 C 1.30743 * 109.59752 * 179.72806 * 6 5 4 8 8 C 1.40549 * 108.74869 * 0.38651 * 7 6 5 9 9 C 1.46563 * 126.58266 * 179.87450 * 8 7 6 10 10 O 1.21715 * 120.00189 * 179.68838 * 9 8 7 11 11 N 1.34778 * 119.99748 * 359.69540 * 9 8 7 12 12 C 1.46505 * 120.00074 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.91310 * 37.44311 * 12 11 9 14 14 C 1.54914 * 111.00202 * 273.54598 * 12 11 9 15 15 N 1.47426 * 104.82992 * 204.91694 * 14 12 11 16 16 C 1.36936 * 125.64483 * 204.16378 * 15 14 12 17 17 H 1.08004 * 120.00405 * 359.97438 * 16 15 14 18 18 C 1.38812 * 120.00093 * 179.97438 * 16 15 14 19 19 N 1.31626 * 119.99909 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00506 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46953 * 90.00082 * 20 18 16 22 22 H 1.48500 * 109.47552 * 210.00252 * 20 18 16 23 23 H 1.48501 * 109.47075 * 330.00551 * 20 18 16 24 24 C 1.47018 * 108.70517 * 24.12623 * 15 14 12 25 25 C 1.54325 * 107.40412 * 358.86539 * 24 15 14 26 26 H 1.09002 * 110.72265 * 219.52294 * 25 24 15 27 27 O 1.42895 * 110.72044 * 96.24103 * 25 24 15 28 28 C 1.36572 * 120.07654 * 0.02562 * 5 4 3 29 29 C 1.36455 * 120.29729 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.46778 * 270.02079 * 1 2 3 31 31 H 1.08996 * 109.47328 * 30.01793 * 1 2 3 32 32 H 1.08998 * 109.46983 * 150.02100 * 1 2 3 33 33 H 1.07998 * 119.84194 * 359.95801 * 3 2 1 34 34 H 1.08005 * 119.64639 * 179.97438 * 4 3 2 35 35 H 1.08007 * 125.62285 * 180.26349 * 7 6 5 36 36 H 0.96998 * 120.00184 * 359.97438 * 11 9 8 37 37 H 1.08999 * 110.37121 * 86.07429 * 14 12 11 38 38 H 1.09003 * 110.36718 * 323.75334 * 14 12 11 39 39 H 0.96997 * 120.00493 * 180.02562 * 19 18 16 40 40 H 1.09002 * 109.88241 * 118.36067 * 24 15 14 41 41 H 1.09000 * 109.88049 * 239.37196 * 24 15 14 42 42 H 0.96706 * 113.99347 * 61.46045 * 27 25 24 43 43 H 1.07996 * 120.36823 * 0.03606 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.2102 0.0000 4 6 3.5659 1.2107 0.0005 5 7 4.2622 0.0396 0.0016 6 7 5.6353 -0.2343 0.0028 7 6 5.8244 -1.5280 0.0093 8 6 4.5729 -2.1675 0.0038 9 6 4.3306 -3.6130 0.0056 10 8 3.1904 -4.0390 0.0060 11 7 5.3704 -4.4705 0.0070 12 6 5.1283 -5.9154 0.0094 13 1 4.2667 -6.1665 -0.6092 14 6 4.9483 -6.4458 1.4537 15 7 5.3243 -7.8695 1.3824 16 6 4.9052 -8.8496 2.2420 17 1 4.2414 -8.6047 3.0580 18 6 5.3335 -10.1581 2.0647 19 7 6.1430 -10.4566 1.0706 20 14 4.7625 -11.4949 3.2377 21 1 3.5064 -12.0993 2.7255 22 1 5.8096 -12.5428 3.3416 23 1 4.5173 -10.9055 4.5785 24 6 6.2231 -8.0630 0.2351 25 6 6.3905 -6.6934 -0.4561 26 1 6.3984 -6.8069 -1.5402 27 8 7.5798 -6.0418 -0.0058 28 6 3.5961 -1.1527 0.0016 29 6 2.1954 -1.1782 0.0005 30 1 -0.3633 0.0004 1.0277 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6763 2.1468 -0.0007 34 1 4.0998 2.1496 0.0001 35 1 6.7841 -2.0234 0.0157 36 1 6.2790 -4.1310 0.0064 37 1 3.9100 -6.3430 1.7691 38 1 5.6081 -5.9130 2.1385 39 1 6.4420 -11.3709 0.9464 40 1 7.1916 -8.4251 0.5798 41 1 5.7863 -8.7787 -0.4613 42 1 8.3926 -6.5279 -0.2013 43 1 1.6663 -2.1197 0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083542802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:45 Heat of formation + Delta-G solvation = 50.642851 kcal Electronic energy + Delta-G solvation = -27677.409395 eV Core-core repulsion = 23725.493319 eV Total energy + Delta-G solvation = -3951.916076 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.34864 -39.35419 -37.97997 -37.54031 -34.78031 -33.88125 -33.74357 -31.63407 -31.57537 -29.79245 -28.43162 -27.56478 -26.69280 -24.55620 -23.90317 -22.66330 -22.16480 -20.54972 -20.17902 -19.71677 -18.09952 -17.20550 -17.05596 -16.60660 -16.29966 -16.00806 -15.50826 -15.12789 -14.83634 -14.72216 -14.30918 -13.95447 -13.89092 -13.79321 -13.62119 -13.06077 -12.94587 -12.67261 -12.50987 -12.25588 -12.17454 -12.10839 -11.74177 -11.24191 -11.06495 -10.92921 -10.79743 -10.54400 -10.44827 -10.32283 -10.08907 -9.77505 -9.60179 -9.58285 -9.28345 -8.65087 -8.56736 -7.81333 -6.83054 -5.71525 -3.03989 0.37881 0.74503 1.90680 2.08172 2.93577 3.42296 3.46382 3.48318 3.52061 3.71651 3.98508 4.20924 4.28177 4.52492 4.53443 4.64469 4.79097 4.90586 5.07516 5.12115 5.22108 5.35647 5.36018 5.37732 5.45282 5.55187 5.60022 5.72697 5.78138 5.93730 6.01490 6.11958 6.13463 6.24317 6.29971 6.54568 6.72700 6.76209 7.04339 7.22855 7.37393 7.48100 7.76329 7.98780 8.12718 8.23788 8.65366 9.21737 9.81919 10.46802 11.40859 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.019877 B = 0.002662 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.308506 B =10515.162505 C =11520.761483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.047 4.047 3 C -0.158 4.158 4 C 0.111 3.889 5 N -0.271 5.271 6 N -0.322 5.322 7 C 0.120 3.880 8 C -0.306 4.306 9 C 0.594 3.406 10 O -0.554 6.554 11 N -0.705 5.705 12 C 0.144 3.856 13 H 0.102 0.898 14 C 0.131 3.869 15 N -0.601 5.601 16 C -0.222 4.222 17 H 0.079 0.921 18 C -0.011 4.011 19 N -0.928 5.928 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.154 3.846 25 C 0.068 3.932 26 H 0.062 0.938 27 O -0.568 6.568 28 C 0.165 3.835 29 C -0.107 4.107 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.157 0.843 34 H 0.171 0.829 35 H 0.200 0.800 36 H 0.404 0.596 37 H 0.045 0.955 38 H 0.026 0.974 39 H 0.252 0.748 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.380 0.620 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.550 24.251 -5.785 25.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.053 4.053 3 C -0.179 4.179 4 C -0.015 4.015 5 N -0.035 5.035 6 N -0.143 5.143 7 C -0.060 4.060 8 C -0.320 4.320 9 C 0.382 3.618 10 O -0.434 6.434 11 N -0.356 5.356 12 C 0.038 3.962 13 H 0.120 0.880 14 C 0.004 3.996 15 N -0.328 5.328 16 C -0.350 4.350 17 H 0.097 0.903 18 C -0.206 4.206 19 N -0.576 5.576 20 Si 0.745 3.255 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.028 3.972 25 C 0.008 3.992 26 H 0.079 0.921 27 O -0.375 6.375 28 C 0.044 3.956 29 C -0.127 4.127 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.174 0.826 34 H 0.189 0.811 35 H 0.216 0.784 36 H 0.239 0.761 37 H 0.063 0.937 38 H 0.043 0.957 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.228 0.772 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.014 25.251 -5.549 26.336 hybrid contribution 0.407 -1.800 0.423 1.894 sum -4.606 23.451 -5.126 24.443 Atomic orbital electron populations 1.20841 0.89444 1.03699 1.03257 1.20064 0.97414 0.92123 0.95674 1.20822 0.91839 0.99629 1.05637 1.21522 0.92021 0.88339 0.99665 1.46063 1.06419 1.05296 1.45726 1.77570 0.88028 1.17067 1.31671 1.24127 0.98900 0.90359 0.92589 1.19791 0.91321 0.93675 1.27245 1.16858 0.84938 0.84032 0.75949 1.90762 1.21825 1.78982 1.51822 1.45482 1.09064 1.06151 1.74867 1.22336 0.96644 0.77917 0.99302 0.88041 1.21845 0.98219 0.86323 0.93196 1.44288 1.54599 1.02174 1.31737 1.19101 1.23263 0.86818 1.05805 0.90284 1.24787 0.99875 0.97223 0.98754 1.69914 1.37696 1.18288 1.31692 0.86072 0.77688 0.81578 0.80175 1.21577 1.21715 1.20686 1.21867 0.95917 0.89955 0.89446 1.23550 0.84248 0.94748 0.96674 0.92057 1.86232 1.16224 1.50778 1.84233 1.19290 0.93001 0.85638 0.97639 1.20795 0.90006 1.00323 1.01526 0.90147 0.90844 0.90478 0.82586 0.81142 0.78358 0.76096 0.93675 0.95665 0.93772 0.92981 0.92646 0.77240 0.82043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.03 36.01 0.36 -0.28 16 2 C -0.05 -0.39 5.89 -104.54 -0.62 -1.01 16 3 C -0.16 -1.03 9.67 -39.95 -0.39 -1.41 16 4 C 0.11 0.90 11.17 -16.68 -0.19 0.71 16 5 N -0.27 -3.27 3.86 -10.54 -0.04 -3.31 16 6 N -0.32 -4.18 12.58 30.75 0.39 -3.79 16 7 C 0.12 1.50 11.44 -17.14 -0.20 1.30 16 8 C -0.31 -4.49 6.17 -104.68 -0.65 -5.14 16 9 C 0.59 10.16 7.78 -12.90 -0.10 10.06 16 10 O -0.55 -11.10 15.45 5.17 0.08 -11.02 16 11 N -0.71 -11.50 5.17 -52.93 -0.27 -11.78 16 12 C 0.14 2.75 3.20 -65.64 -0.21 2.54 16 13 H 0.10 2.06 7.73 -51.93 -0.40 1.65 16 14 C 0.13 2.98 6.92 -2.53 -0.02 2.96 16 15 N -0.60 -15.72 3.39 -170.07 -0.58 -16.30 16 16 C -0.22 -6.32 10.28 -15.06 -0.15 -6.48 16 17 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 18 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 19 N -0.93 -27.04 10.31 55.49 0.57 -26.47 16 20 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 C 0.15 3.63 5.13 -3.07 -0.02 3.61 16 25 C 0.07 1.23 4.22 -24.76 -0.10 1.13 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 O -0.57 -9.08 12.15 -35.23 -0.43 -9.51 16 28 C 0.16 2.25 6.76 -84.07 -0.57 1.68 16 29 C -0.11 -1.26 9.38 -39.53 -0.37 -1.63 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.27 8.10 -51.93 -0.42 -0.15 16 32 H 0.08 0.45 8.09 -51.93 -0.42 0.03 16 33 H 0.16 0.45 8.06 -52.49 -0.42 0.03 16 34 H 0.17 0.85 8.06 -52.48 -0.42 0.42 16 35 H 0.20 1.82 7.46 -52.48 -0.39 1.43 16 36 H 0.40 5.74 6.49 -40.82 -0.26 5.47 16 37 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 41 H 0.06 1.44 7.37 -51.93 -0.38 1.06 16 42 H 0.38 4.77 9.09 45.56 0.41 5.18 16 43 H 0.16 2.07 7.12 -52.49 -0.37 1.69 16 LS Contribution 361.00 15.07 5.44 5.44 Total: -1.00 -35.86 361.00 -7.88 -43.74 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -4.71 Total: 7.96 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: -3.31 Total: 7.65 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: 0.07 Total: -61.64 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.35 Total: -20.53 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.86 -7.88 -43.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083542802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.381 kcal (2) G-P(sol) polarization free energy of solvation -35.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds