Wall clock time and date at job start Tue Mar 31 2020 06:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36118 * 126.30878 * 2 1 4 4 N 1.30092 * 110.04250 * 180.02562 * 3 2 1 5 5 C 1.35851 * 109.53480 * 0.02562 * 4 3 2 6 6 C 1.39716 * 133.50579 * 180.02562 * 5 4 3 7 7 C 1.37840 * 120.10455 * 179.97438 * 6 5 4 8 8 C 1.38329 * 120.73007 * 359.65049 * 7 6 5 9 9 C 1.39404 * 120.27823 * 0.64869 * 8 7 6 10 10 C 1.47524 * 120.24720 * 179.66771 * 9 8 7 11 11 O 1.21597 * 119.99841 * 172.62311 * 10 9 8 12 12 N 1.34775 * 120.00325 * 352.62049 * 10 9 8 13 13 C 1.46502 * 120.00127 * 179.97438 * 12 10 9 14 14 H 1.08994 * 110.77612 * 36.78835 * 13 12 10 15 15 C 1.54324 * 110.72081 * 273.54668 * 13 12 10 16 16 N 1.47018 * 107.27203 * 219.44703 * 15 13 12 17 17 C 1.36932 * 125.64972 * 178.97811 * 16 15 13 18 18 H 1.08001 * 120.00214 * 359.97438 * 17 16 15 19 19 C 1.38819 * 120.00246 * 179.97438 * 17 16 15 20 20 N 1.31616 * 119.99739 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99981 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47322 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46673 * 120.00332 * 21 19 17 24 24 H 1.48501 * 109.47080 * 239.99831 * 21 19 17 25 25 C 1.47427 * 108.70470 * 358.93880 * 16 15 13 26 26 C 1.54914 * 104.82876 * 24.13087 * 25 16 15 27 27 H 1.09002 * 111.00124 * 204.91410 * 26 25 16 28 28 O 1.42901 * 111.00417 * 81.06690 * 26 25 16 29 29 C 1.37516 * 126.30925 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.46985 * 252.74321 * 1 2 3 31 31 H 1.08999 * 109.46985 * 12.75089 * 1 2 3 32 32 H 1.09001 * 109.46424 * 132.74625 * 1 2 3 33 33 H 1.08002 * 124.97723 * 0.04870 * 3 2 1 34 34 H 1.07993 * 119.94928 * 359.97438 * 6 5 4 35 35 H 1.07999 * 119.63749 * 179.97438 * 7 6 5 36 36 H 1.07993 * 119.86440 * 180.31476 * 8 7 6 37 37 H 0.96997 * 120.00070 * 0.02562 * 12 10 9 38 38 H 1.08996 * 109.88189 * 100.02449 * 15 13 12 39 39 H 1.09004 * 109.88000 * 338.85997 * 15 13 12 40 40 H 0.96999 * 119.99971 * 180.02562 * 20 19 17 41 41 H 1.08992 * 110.37000 * 142.96773 * 25 16 15 42 42 H 1.08999 * 110.36772 * 265.18581 * 25 16 15 43 43 H 0.96699 * 113.99717 * 61.45299 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2711 1.0969 0.0000 4 7 3.5199 0.7325 -0.0005 5 6 3.5974 -0.6238 -0.0015 6 6 4.6639 -1.5263 -0.0019 7 6 4.4214 -2.8832 -0.0024 8 6 3.1266 -3.3699 0.0047 9 6 2.0451 -2.4903 -0.0010 10 6 0.6645 -3.0101 -0.0008 11 8 -0.2727 -2.2463 0.1294 12 7 0.4418 -4.3314 -0.1449 13 6 -0.9293 -4.8477 -0.1441 14 1 -1.6033 -4.1554 -0.6484 15 6 -1.4079 -5.1238 1.2969 16 7 -2.1872 -6.3701 1.2667 17 6 -2.7716 -6.9722 2.3488 18 1 -2.6780 -6.5292 3.3293 19 6 -3.4845 -8.1522 2.1855 20 7 -3.5982 -8.6923 0.9907 21 14 -4.2812 -8.9739 3.6618 22 1 -4.0074 -8.1729 4.8818 23 1 -5.7479 -9.0626 3.4471 24 1 -3.7221 -10.3394 3.8297 25 6 -2.2359 -6.8637 -0.1216 26 6 -0.9880 -6.2504 -0.8045 27 1 -1.1325 -6.1693 -1.8819 28 8 0.1853 -7.0082 -0.5029 29 6 2.2794 -1.1081 -0.0005 30 1 -0.3633 -0.3049 0.9814 31 1 -0.3633 1.0023 -0.2268 32 1 -0.3632 -0.6976 -0.7547 33 1 1.9246 2.1198 0.0008 34 1 5.6799 -1.1603 -0.0019 35 1 5.2515 -3.5741 -0.0032 36 1 2.9527 -4.4357 0.0094 37 1 1.1893 -4.9408 -0.2484 38 1 -2.0354 -4.3024 1.6428 39 1 -0.5484 -5.2399 1.9571 40 1 -4.0966 -9.5166 0.8765 41 1 -2.1816 -7.9521 -0.1394 42 1 -3.1463 -6.5219 -0.6140 43 1 0.1522 -7.9240 -0.8116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083582239.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:54 Heat of formation + Delta-G solvation = 45.412484 kcal Electronic energy + Delta-G solvation = -28335.556645 eV Core-core repulsion = 24383.413763 eV Total energy + Delta-G solvation = -3952.142882 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.34964 -39.77916 -37.99724 -37.26043 -34.78324 -34.28052 -33.91890 -31.90819 -30.78492 -29.59510 -28.49735 -27.16961 -26.83226 -24.77994 -23.89810 -22.27839 -22.00979 -20.70875 -20.05345 -19.71218 -17.81171 -17.48280 -17.17418 -16.69509 -16.57979 -16.03537 -15.40621 -15.36074 -14.90846 -14.66302 -14.64814 -14.11200 -14.04713 -13.71468 -13.23033 -13.20769 -13.00540 -12.58001 -12.51512 -12.17701 -11.91377 -11.77944 -11.53759 -11.38029 -11.11587 -10.89743 -10.63954 -10.50769 -10.43615 -10.35380 -10.06113 -9.89653 -9.52843 -9.28890 -8.76855 -8.73067 -8.55211 -8.20866 -6.90566 -5.74719 -3.14497 0.45440 1.33244 2.34765 2.59117 3.10354 3.25062 3.35957 3.42160 3.44425 3.79035 4.07400 4.38236 4.44385 4.52905 4.74463 4.75609 4.82502 5.10771 5.19547 5.25197 5.31344 5.32723 5.44184 5.49645 5.51745 5.65284 5.76134 5.85187 5.94141 6.01270 6.17295 6.21341 6.22748 6.33568 6.49225 6.60124 6.64112 6.88382 6.99631 7.19592 7.50846 7.65440 7.67755 7.72260 8.06051 8.25616 8.35382 9.13117 9.73964 10.36791 11.30614 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.021266 B = 0.002876 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.363340 B = 9731.717642 C =10210.718855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.479 5.479 3 C 0.254 3.746 4 N -0.499 5.499 5 C 0.032 3.968 6 C -0.039 4.039 7 C -0.139 4.139 8 C -0.063 4.063 9 C -0.123 4.123 10 C 0.553 3.447 11 O -0.549 6.549 12 N -0.697 5.697 13 C 0.143 3.857 14 H 0.100 0.900 15 C 0.133 3.867 16 N -0.597 5.597 17 C -0.216 4.216 18 H 0.079 0.921 19 C -0.012 4.012 20 N -0.927 5.927 21 Si 0.916 3.084 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.126 3.874 26 C 0.067 3.933 27 H 0.059 0.941 28 O -0.563 6.563 29 C 0.097 3.903 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.214 0.786 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.407 0.593 38 H 0.028 0.972 39 H 0.029 0.971 40 H 0.252 0.748 41 H 0.116 0.884 42 H 0.023 0.977 43 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.064 12.999 -6.634 19.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.166 5.166 3 C -0.031 4.031 4 N -0.218 5.218 5 C -0.087 4.087 6 C -0.059 4.059 7 C -0.159 4.159 8 C -0.084 4.084 9 C -0.129 4.129 10 C 0.341 3.659 11 O -0.431 6.431 12 N -0.347 5.347 13 C 0.038 3.962 14 H 0.118 0.882 15 C 0.006 3.994 16 N -0.323 5.323 17 C -0.345 4.345 18 H 0.096 0.904 19 C -0.207 4.207 20 N -0.576 5.576 21 Si 0.747 3.253 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.000 4.000 26 C 0.007 3.993 27 H 0.077 0.923 28 O -0.369 6.369 29 C -0.016 4.016 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.127 0.873 33 H 0.230 0.770 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.245 0.755 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.063 0.937 41 H 0.133 0.867 42 H 0.041 0.959 43 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 12.963 14.443 -6.206 20.375 hybrid contribution -1.159 -1.656 0.507 2.084 sum 11.804 12.787 -5.699 18.312 Atomic orbital electron populations 1.22511 0.74076 1.02133 1.06401 1.45351 1.08568 1.04880 1.57781 1.25403 0.85213 0.93568 0.98944 1.70497 1.18412 1.10460 1.22448 1.19045 0.91819 0.90487 1.07312 1.20433 0.97490 0.91429 0.96543 1.20826 0.96759 0.94750 1.03582 1.21218 0.91631 0.99195 0.96328 1.18882 0.93800 0.89871 1.10374 1.18301 0.88601 0.82545 0.76410 1.90771 1.45345 1.55534 1.51403 1.45816 1.09868 1.06987 1.72045 1.22169 0.82501 0.93350 0.98137 0.88196 1.21581 0.94735 0.89885 0.93241 1.44301 1.60690 1.22911 1.04407 1.19148 1.24795 1.03488 0.87021 0.90354 1.24759 1.00812 0.98055 0.97105 1.69717 1.46448 1.21415 1.20045 0.85958 0.78752 0.79164 0.81407 1.20511 1.21742 1.21709 1.22624 0.90982 1.02484 0.83866 1.23569 0.88359 0.90705 0.96670 0.92302 1.86198 1.39237 1.27383 1.84129 1.18610 0.91177 0.88313 1.03539 0.89853 0.91444 0.87338 0.76964 0.84966 0.84584 0.84576 0.75546 0.95405 0.95263 0.93738 0.86672 0.95917 0.77028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.99 9.12 59.85 0.55 1.54 16 2 N -0.48 -5.93 3.19 -122.93 -0.39 -6.32 16 3 C 0.25 2.73 12.47 -89.72 -1.12 1.61 16 4 N -0.50 -6.61 11.28 -12.05 -0.14 -6.74 16 5 C 0.03 0.43 7.22 -84.71 -0.61 -0.18 16 6 C -0.04 -0.43 10.09 -39.18 -0.40 -0.83 16 7 C -0.14 -1.34 9.99 -39.69 -0.40 -1.73 16 8 C -0.06 -0.70 9.51 -39.11 -0.37 -1.08 16 9 C -0.12 -1.69 5.88 -104.95 -0.62 -2.31 16 10 C 0.55 8.50 7.74 -12.48 -0.10 8.40 16 11 O -0.55 -9.22 10.52 5.28 0.06 -9.16 16 12 N -0.70 -10.56 5.03 -53.07 -0.27 -10.83 16 13 C 0.14 2.54 3.12 -66.09 -0.21 2.33 16 14 H 0.10 1.78 7.70 -51.93 -0.40 1.38 16 15 C 0.13 2.87 6.99 -3.07 -0.02 2.85 16 16 N -0.60 -15.00 3.39 -170.07 -0.58 -15.57 16 17 C -0.22 -5.98 10.27 -15.06 -0.15 -6.13 16 18 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 19 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 20 N -0.93 -25.97 10.09 55.49 0.56 -25.41 16 21 Si 0.92 21.82 29.55 -169.99 -5.02 16.80 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 25 C 0.13 2.85 5.62 -2.52 -0.01 2.84 16 26 C 0.07 1.17 4.28 -24.58 -0.11 1.07 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 28 O -0.56 -9.10 12.23 -35.23 -0.43 -9.53 16 29 C 0.10 1.36 6.78 -83.76 -0.57 0.79 16 30 H 0.08 1.05 7.31 -51.93 -0.38 0.67 16 31 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 32 H 0.11 1.41 5.88 -52.07 -0.31 1.10 16 33 H 0.21 1.25 8.06 -52.49 -0.42 0.82 16 34 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.14 1.28 6.46 -52.49 -0.34 0.94 16 37 H 0.41 5.59 5.65 -40.82 -0.23 5.36 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.03 0.66 8.03 -51.93 -0.42 0.24 16 40 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 41 H 0.12 2.88 5.87 -51.93 -0.31 2.58 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.38 5.06 9.11 45.56 0.42 5.47 16 LS Contribution 350.04 15.07 5.27 5.27 Total: -1.00 -33.43 350.04 -9.63 -43.06 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -4.46 Total: 9.70 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: -4.23 Total: 8.73 kcal Atomic # 7 Polarization: -64.06 SS G_CDS: -0.81 Total: -64.87 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.38 Total: -18.69 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.43 -9.63 -43.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083582239.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.474 kcal (2) G-P(sol) polarization free energy of solvation -33.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds