Wall clock time and date at job start Tue Mar 31 2020 04:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39062 * 119.35820 * 2 1 4 4 C 1.35700 * 122.67740 * 180.02562 * 3 2 1 5 5 C 1.41020 * 120.59281 * 0.02562 * 4 3 2 6 6 N 1.32136 * 134.70398 * 179.97438 * 5 4 3 7 7 N 1.39990 * 108.88951 * 180.02562 * 6 5 4 8 8 H 0.96999 * 125.06206 * 180.02562 * 7 6 5 9 9 C 1.34243 * 109.87149 * 359.97438 * 7 6 5 10 10 C 1.37573 * 107.92802 * 359.73517 * 9 7 6 11 11 C 1.38457 * 119.35950 * 179.97438 * 2 1 3 12 12 C 1.47309 * 120.73912 * 359.97228 * 11 2 1 13 13 O 1.21622 * 120.00017 * 90.00207 * 12 11 2 14 14 N 1.34775 * 119.99814 * 270.00639 * 12 11 2 15 15 C 1.46497 * 119.99821 * 180.02562 * 14 12 11 16 16 H 1.09007 * 110.64229 * 36.41145 * 15 14 12 17 17 C 1.54321 * 110.72147 * 273.26438 * 15 14 12 18 18 N 1.47016 * 107.27185 * 219.44346 * 17 15 14 19 19 C 1.36942 * 125.64480 * 178.97835 * 18 17 15 20 20 H 1.07998 * 120.00227 * 349.93742 * 19 18 17 21 21 C 1.38816 * 119.99700 * 169.94540 * 19 18 17 22 22 N 1.31620 * 119.99968 * 350.41582 * 21 19 18 23 23 Si 1.86804 * 119.99836 * 170.42125 * 21 19 18 24 24 H 1.48501 * 109.47196 * 94.13803 * 23 21 19 25 25 H 1.48500 * 109.46832 * 214.13794 * 23 21 19 26 26 H 1.48499 * 109.46932 * 334.13506 * 23 21 19 27 27 C 1.47423 * 108.70590 * 358.94208 * 18 17 15 28 28 C 1.54906 * 104.82971 * 24.12721 * 27 18 17 29 29 H 1.08998 * 111.00124 * 204.91654 * 28 27 18 30 30 O 1.42898 * 111.00569 * 81.06636 * 28 27 18 31 31 H 1.09003 * 109.46732 * 270.02054 * 1 2 3 32 32 H 1.09001 * 109.47254 * 30.01352 * 1 2 3 33 33 H 1.09004 * 109.47184 * 150.01758 * 1 2 3 34 34 H 1.08007 * 118.65803 * 359.97438 * 3 2 1 35 35 H 1.08000 * 119.70142 * 179.97438 * 4 3 2 36 36 H 1.07994 * 126.03029 * 180.02562 * 9 7 6 37 37 H 0.96999 * 120.00354 * 359.71466 * 14 12 11 38 38 H 1.08993 * 109.88177 * 338.86751 * 17 15 14 39 39 H 1.09002 * 109.87757 * 99.87455 * 17 15 14 40 40 H 0.97001 * 119.99332 * 180.02562 * 22 21 19 41 41 H 1.09002 * 110.36526 * 142.96725 * 27 18 17 42 42 H 1.09000 * 110.36862 * 265.28735 * 27 18 17 43 43 H 0.96701 * 113.99974 * 67.80036 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2120 0.0000 4 6 3.5435 1.2906 -0.0005 5 6 4.3303 0.1203 -0.0016 6 7 5.6283 -0.1271 -0.0027 7 7 5.8255 -1.5131 -0.0041 8 1 6.6900 -1.9529 -0.0047 9 6 4.6398 -2.1427 -0.0032 10 6 3.6519 -1.1853 0.0047 11 6 2.1858 -1.2067 0.0005 12 6 1.4515 -2.4837 0.0017 13 8 1.1479 -3.0116 -1.0511 14 7 1.1159 -3.0670 1.1695 15 6 0.3861 -4.3372 1.1706 16 1 0.7196 -4.9728 0.3502 17 6 -1.1354 -4.0929 1.0884 18 7 -1.7827 -5.0677 1.9784 19 6 -3.1294 -5.1700 2.2051 20 1 -3.7979 -4.4033 1.8422 21 6 -3.6352 -6.2593 2.9013 22 7 -2.8554 -7.2826 3.1789 23 14 -5.4226 -6.2726 3.4441 24 1 -6.2448 -6.9704 2.4231 25 1 -5.5400 -6.9820 4.7434 26 1 -5.9038 -4.8761 3.5973 27 6 -0.7422 -5.9173 2.5857 28 6 0.5485 -5.0624 2.5327 29 1 1.4363 -5.6948 2.5353 30 8 0.5867 -4.1250 3.6106 31 1 -0.3633 0.0004 1.0277 32 1 -0.3634 0.8899 -0.5140 33 1 -0.3634 -0.8902 -0.5136 34 1 1.6167 2.1281 -0.0004 35 1 4.0234 2.2581 -0.0009 36 1 4.4884 -3.2119 -0.0035 37 1 1.3616 -2.6481 2.0091 38 1 -1.3664 -3.0798 1.4175 39 1 -1.4791 -4.2372 0.0642 40 1 -3.2090 -8.0438 3.6651 41 1 -0.9995 -6.1523 3.6186 42 1 -0.6149 -6.8327 2.0080 43 1 0.6871 -4.5318 4.4822 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083587435.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:27 Heat of formation + Delta-G solvation = 43.697002 kcal Electronic energy + Delta-G solvation = -28223.769069 eV Core-core repulsion = 24271.551798 eV Total energy + Delta-G solvation = -3952.217271 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.44299 -39.73611 -38.08042 -37.15964 -34.78179 -33.94180 -32.88016 -31.73372 -31.09901 -30.20750 -28.57947 -27.39583 -26.56167 -24.67640 -24.09728 -22.32559 -21.24504 -20.68206 -20.06580 -19.58362 -18.46215 -17.70179 -17.12221 -16.73455 -16.03951 -15.53755 -15.43907 -15.21559 -15.03243 -14.83539 -14.29755 -14.00004 -13.66908 -13.47617 -13.37587 -13.07121 -12.90850 -12.58280 -12.32941 -12.02840 -11.85483 -11.70182 -11.57069 -11.36957 -11.01980 -10.95286 -10.83881 -10.66891 -10.46922 -10.31122 -10.12443 -9.85330 -9.68046 -9.29907 -8.94398 -8.75773 -8.63178 -7.80118 -6.82487 -5.78760 -3.09961 0.25338 1.61813 2.07590 2.40438 2.70919 3.30826 3.38762 3.44632 3.46945 3.55729 4.00005 4.39898 4.48243 4.53951 4.72454 4.85349 4.95655 5.10433 5.20079 5.29050 5.31514 5.35858 5.45209 5.54161 5.67765 5.68475 5.78485 5.88578 5.98440 6.03081 6.15123 6.19956 6.22123 6.41215 6.51393 6.58616 6.71399 6.79937 6.91931 7.25129 7.29970 7.38902 7.70033 7.76209 8.04627 8.22116 8.39088 9.15101 9.77061 10.42877 11.34852 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.021500 B = 0.002972 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.982924 B = 9418.263334 C =10111.193165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.073 4.073 3 C -0.072 4.072 4 C -0.089 4.089 5 C 0.102 3.898 6 N -0.301 5.301 7 N -0.429 5.429 8 H 0.444 0.556 9 C 0.086 3.914 10 C -0.179 4.179 11 C -0.052 4.052 12 C 0.561 3.439 13 O -0.534 6.534 14 N -0.698 5.698 15 C 0.142 3.858 16 H 0.101 0.899 17 C 0.132 3.868 18 N -0.595 5.595 19 C -0.222 4.222 20 H 0.077 0.923 21 C -0.008 4.008 22 N -0.923 5.923 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.149 3.851 28 C 0.067 3.933 29 H 0.060 0.940 30 O -0.560 6.560 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.187 0.813 37 H 0.410 0.590 38 H 0.030 0.970 39 H 0.029 0.971 40 H 0.253 0.747 41 H 0.077 0.923 42 H 0.037 0.963 43 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.516 12.338 -2.737 20.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.075 4.075 3 C -0.095 4.095 4 C -0.110 4.110 5 C -0.052 4.052 6 N -0.129 5.129 7 N -0.131 5.131 8 H 0.289 0.711 9 C -0.070 4.070 10 C -0.190 4.190 11 C -0.058 4.058 12 C 0.346 3.654 13 O -0.411 6.411 14 N -0.349 5.349 15 C 0.037 3.963 16 H 0.119 0.881 17 C 0.005 3.995 18 N -0.321 5.321 19 C -0.351 4.351 20 H 0.094 0.906 21 C -0.205 4.205 22 N -0.571 5.571 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 C 0.023 3.977 28 C 0.006 3.994 29 H 0.078 0.922 30 O -0.366 6.366 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.204 0.796 37 H 0.246 0.754 38 H 0.048 0.952 39 H 0.047 0.953 40 H 0.063 0.937 41 H 0.095 0.905 42 H 0.054 0.946 43 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 17.276 12.763 -3.879 21.826 hybrid contribution -1.049 -1.083 1.087 1.858 sum 16.227 11.680 -2.793 20.187 Atomic orbital electron populations 1.20908 0.90249 1.03585 1.03107 1.19661 0.96255 0.91202 1.00345 1.20419 0.93615 0.97375 0.98075 1.19872 0.92501 0.95340 1.03237 1.20846 0.90355 0.94479 0.99541 1.77661 1.15550 0.90053 1.29640 1.46276 1.08243 1.05339 1.53239 0.71105 1.22505 0.85164 0.98945 1.00367 1.20122 0.92207 0.92319 1.14304 1.20021 0.90064 0.93044 1.02667 1.18151 0.78824 0.84088 0.84345 1.90843 1.54919 1.64074 1.31282 1.45913 1.56534 1.23984 1.08446 1.22172 0.93315 0.84177 0.96674 0.88117 1.21589 0.89451 0.94185 0.94275 1.44253 1.02380 1.36400 1.49104 1.19034 0.81298 1.04155 1.30598 0.90557 1.24793 0.98148 0.95599 1.01912 1.69916 1.34770 1.07026 1.45340 0.86103 0.84292 0.77459 0.77929 1.21608 1.21652 1.20574 1.22064 0.84049 0.91247 1.00328 1.23593 0.99156 0.90615 0.86004 0.92238 1.86265 1.96781 1.36209 1.17359 0.90417 0.90951 0.90944 0.84928 0.85127 0.79598 0.75433 0.95172 0.95324 0.93725 0.90451 0.94558 0.77401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 9.58 36.01 0.34 -1.06 16 2 C -0.07 -0.88 5.91 -104.24 -0.62 -1.50 16 3 C -0.07 -0.72 9.45 -40.18 -0.38 -1.10 16 4 C -0.09 -0.93 10.02 -39.44 -0.40 -1.32 16 5 C 0.10 1.27 7.49 -83.08 -0.62 0.65 16 6 N -0.30 -3.60 12.71 33.24 0.42 -3.18 16 7 N -0.43 -3.77 7.20 30.75 0.22 -3.55 16 8 H 0.44 2.12 8.96 -182.68 -1.64 0.48 16 9 C 0.09 0.85 12.00 -16.74 -0.20 0.64 16 10 C -0.18 -2.26 6.35 -103.15 -0.65 -2.92 16 11 C -0.05 -0.72 5.80 -102.75 -0.60 -1.31 16 12 C 0.56 8.81 5.67 -12.57 -0.07 8.73 16 13 O -0.53 -10.27 16.81 5.26 0.09 -10.18 16 14 N -0.70 -10.59 5.08 -53.14 -0.27 -10.86 16 15 C 0.14 2.51 3.13 -66.10 -0.21 2.31 16 16 H 0.10 1.82 7.69 -51.93 -0.40 1.42 16 17 C 0.13 2.86 6.99 -3.07 -0.02 2.84 16 18 N -0.59 -15.00 3.39 -170.08 -0.58 -15.57 16 19 C -0.22 -6.18 10.24 -15.06 -0.15 -6.33 16 20 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 21 C -0.01 -0.23 5.40 -17.43 -0.09 -0.33 16 22 N -0.92 -26.33 10.68 55.49 0.59 -25.74 16 23 Si 0.91 21.88 29.56 -169.99 -5.03 16.85 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 C 0.15 3.37 5.16 -2.53 -0.01 3.36 16 28 C 0.07 1.14 4.28 -24.58 -0.11 1.04 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 O -0.56 -8.89 12.23 -35.23 -0.43 -9.32 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 33 H 0.07 1.01 7.02 -51.93 -0.36 0.65 16 34 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 35 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.19 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.41 5.80 7.55 -40.82 -0.31 5.49 16 38 H 0.03 0.66 8.03 -51.93 -0.42 0.25 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 41 H 0.08 1.92 6.94 -51.93 -0.36 1.56 16 42 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 43 H 0.38 4.71 9.12 45.56 0.42 5.12 16 LS Contribution 362.67 15.07 5.47 5.47 Total: -1.00 -35.18 362.67 -9.29 -44.47 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -5.99 Total: 7.92 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -3.79 Total: 3.69 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.39 Total: -58.90 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.34 Total: -19.50 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.18 -9.29 -44.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083587435.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.166 kcal (2) G-P(sol) polarization free energy of solvation -35.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds