Wall clock time and date at job start Tue Mar 31 2020 04:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33823 * 126.08290 * 2 1 4 4 H 0.96993 * 124.98961 * 0.02562 * 3 2 1 5 5 N 1.39920 * 110.02798 * 179.97438 * 3 2 1 6 6 C 1.31926 * 109.06118 * 0.02562 * 5 3 2 7 7 C 1.41386 * 134.39450 * 180.02562 * 6 5 3 8 8 C 1.35190 * 119.92996 * 179.97438 * 7 6 5 9 9 C 1.41035 * 121.65353 * 359.97438 * 8 7 6 10 10 C 1.47522 * 119.39011 * 179.97438 * 9 8 7 11 11 O 1.21598 * 119.99908 * 179.97438 * 10 9 8 12 12 N 1.34771 * 119.99875 * 0.02562 * 10 9 8 13 13 C 1.46508 * 119.99837 * 179.97438 * 12 10 9 14 14 H 1.08997 * 110.88411 * 31.12042 * 13 12 10 15 15 C 1.55121 * 111.22597 * 267.20493 * 13 12 10 16 16 N 1.47427 * 104.72601 * 279.17624 * 15 13 12 17 17 C 1.36941 * 125.65129 * 155.81238 * 16 15 13 18 18 H 1.08000 * 119.99956 * 349.41172 * 17 16 15 19 19 C 1.38807 * 119.99805 * 169.40424 * 17 16 15 20 20 N 1.31621 * 119.99651 * 152.97452 * 19 17 16 21 21 Si 1.86800 * 120.00224 * 332.97533 * 19 17 16 22 22 H 1.48497 * 109.47027 * 85.21081 * 21 19 17 23 23 H 1.48501 * 109.46963 * 325.20624 * 21 19 17 24 24 H 1.48505 * 109.46835 * 205.20914 * 21 19 17 25 25 C 1.47026 * 108.70146 * 335.55868 * 16 15 13 26 26 C 1.54320 * 107.26821 * 1.28231 * 25 16 15 27 27 H 1.09012 * 110.72007 * 263.83183 * 26 25 16 28 28 O 1.42901 * 110.71945 * 140.56267 * 26 25 16 29 29 C 1.38215 * 121.22063 * 0.26660 * 9 8 7 30 30 C 1.38538 * 126.08251 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47052 * 270.02548 * 1 2 3 32 32 H 1.09000 * 109.46763 * 30.02089 * 1 2 3 33 33 H 1.08996 * 109.47122 * 150.02190 * 1 2 3 34 34 H 1.07996 * 120.03079 * 0.02562 * 7 6 5 35 35 H 1.08002 * 119.16992 * 179.97438 * 8 7 6 36 36 H 0.97003 * 120.00491 * 359.97438 * 12 10 9 37 37 H 1.08999 * 110.49701 * 160.33497 * 15 13 12 38 38 H 1.09007 * 110.34645 * 37.93960 * 15 13 12 39 39 H 0.96999 * 120.00399 * 5.05430 * 20 19 17 40 40 H 1.08998 * 109.88207 * 120.70239 * 25 16 15 41 41 H 1.09000 * 109.87856 * 241.71534 * 25 16 15 42 42 H 0.96704 * 114.00266 * 61.45041 * 28 26 25 43 43 H 1.08001 * 120.33397 * 179.74621 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2951 1.0815 0.0000 4 1 1.9805 1.9990 0.0004 5 7 3.6397 0.6945 0.0006 6 6 3.7089 -0.6229 0.0004 7 6 4.7697 -1.5577 0.0012 8 6 4.5011 -2.8826 0.0012 9 6 3.1775 -3.3695 0.0010 10 6 2.9417 -4.8258 0.0005 11 8 1.8050 -5.2577 0.0007 12 7 3.9862 -5.6775 0.0007 13 6 3.7521 -7.1237 0.0008 14 1 2.8295 -7.3680 -0.5257 15 6 3.7317 -7.6893 1.4450 16 7 5.1524 -7.8420 1.8078 17 6 5.6538 -7.8552 3.0821 18 1 5.0226 -7.5790 3.9137 19 6 6.9734 -8.2238 3.3048 20 7 7.6179 -7.7602 4.3547 21 14 7.8346 -9.3776 2.1146 22 1 8.3978 -8.5941 0.9858 23 1 6.8592 -10.3678 1.5920 24 1 8.9314 -10.0879 2.8201 25 6 5.9411 -7.9839 0.5752 26 6 4.9593 -7.8824 -0.6111 27 1 4.6598 -8.8743 -0.9499 28 8 5.5367 -7.1337 -1.6826 29 6 2.0970 -2.5075 -0.0048 30 6 2.3229 -1.1196 0.0005 31 1 -0.3633 0.0005 1.0277 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3633 -0.8901 -0.5135 34 1 5.7933 -1.2136 0.0027 35 1 5.3208 -3.5859 0.0014 36 1 4.8930 -5.3330 0.0009 37 1 3.2280 -8.6556 1.4694 38 1 3.2412 -6.9877 2.1199 39 1 7.1505 -7.2208 5.0116 40 1 6.6803 -7.1852 0.5140 41 1 6.4405 -8.9527 0.5642 42 1 6.3406 -7.5271 -2.0489 43 1 1.0893 -2.8960 -0.0090 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083632207.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:27 Heat of formation + Delta-G solvation = 44.591014 kcal Electronic energy + Delta-G solvation = -27964.102907 eV Core-core repulsion = 24011.924403 eV Total energy + Delta-G solvation = -3952.178503 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.61163 -39.83770 -38.25062 -36.69958 -35.33102 -33.82166 -33.36650 -32.02632 -30.93755 -30.41172 -28.84200 -27.82653 -27.18841 -24.55135 -23.73682 -22.88006 -20.92010 -20.73877 -20.23027 -19.72398 -17.97633 -17.87089 -17.37386 -17.00679 -16.51453 -15.98416 -15.53289 -15.37169 -14.76316 -14.50969 -14.29114 -14.10717 -13.91018 -13.66532 -13.38482 -13.37006 -13.02870 -12.94609 -12.86865 -12.60382 -12.28852 -11.92373 -11.72189 -11.59962 -11.28079 -11.20749 -10.66351 -10.65299 -10.50706 -10.33741 -9.98076 -9.64246 -9.49575 -9.20774 -9.02707 -8.76548 -8.39536 -7.73547 -7.14277 -6.35274 -3.21035 0.32030 1.37589 2.11973 2.34817 3.10124 3.34201 3.43500 3.46343 3.63967 3.94647 4.02242 4.13517 4.28949 4.48127 4.55390 4.79765 4.87746 4.96752 4.97870 5.07064 5.15407 5.22321 5.27582 5.31658 5.40694 5.45267 5.46113 5.47869 5.84677 5.96978 5.98391 6.14654 6.24527 6.30174 6.37847 6.41514 6.52429 6.54634 6.62664 6.75392 6.92076 7.33418 7.64735 7.76908 7.90433 8.31348 8.54938 9.01005 9.55001 10.20710 11.12834 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.017293 B = 0.003070 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.786578 B = 9117.242690 C = 9610.659021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.129 3.871 3 N -0.425 5.425 4 H 0.442 0.558 5 N -0.311 5.311 6 C 0.124 3.876 7 C -0.113 4.113 8 C -0.045 4.045 9 C -0.169 4.169 10 C 0.564 3.436 11 O -0.556 6.556 12 N -0.690 5.690 13 C 0.143 3.857 14 H 0.101 0.899 15 C 0.122 3.878 16 N -0.602 5.602 17 C -0.329 4.329 18 H 0.078 0.922 19 C -0.020 4.020 20 N -0.917 5.917 21 Si 1.070 2.930 22 H -0.295 1.295 23 H -0.294 1.294 24 H -0.299 1.299 25 C 0.084 3.916 26 C 0.082 3.918 27 H 0.078 0.922 28 O -0.557 6.557 29 C 0.034 3.966 30 C -0.218 4.218 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.406 0.594 37 H 0.036 0.964 38 H 0.056 0.944 39 H 0.263 0.737 40 H 0.050 0.950 41 H 0.032 0.968 42 H 0.378 0.622 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.881 14.059 -13.249 22.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.011 4.011 3 N -0.125 5.125 4 H 0.286 0.714 5 N -0.138 5.138 6 C -0.030 4.030 7 C -0.134 4.134 8 C -0.067 4.067 9 C -0.173 4.173 10 C 0.352 3.648 11 O -0.436 6.436 12 N -0.339 5.339 13 C 0.037 3.963 14 H 0.119 0.881 15 C -0.005 4.005 16 N -0.331 5.331 17 C -0.456 4.456 18 H 0.095 0.905 19 C -0.221 4.221 20 N -0.557 5.557 21 Si 0.904 3.096 22 H -0.223 1.223 23 H -0.222 1.222 24 H -0.227 1.227 25 C -0.041 4.041 26 C 0.022 3.978 27 H 0.095 0.905 28 O -0.362 6.362 29 C 0.012 3.988 30 C -0.228 4.228 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.242 0.758 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.049 0.951 42 H 0.226 0.774 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.961 14.529 -13.351 22.572 hybrid contribution -1.010 0.166 0.377 1.091 sum -11.971 14.695 -12.974 22.969 Atomic orbital electron populations 1.20621 0.85970 1.04797 1.04343 1.21358 0.94446 0.87200 0.98101 1.46272 1.04870 1.08631 1.52739 0.71401 1.77670 0.92483 1.12291 1.31328 1.21037 0.94158 0.90818 0.97006 1.19732 0.96948 0.90675 1.06057 1.20756 0.95773 0.95317 0.94893 1.19490 0.93660 0.92969 1.11228 1.18059 0.84772 0.85938 0.76024 1.90727 1.22188 1.78971 1.51762 1.45415 1.09495 1.05668 1.73358 1.22213 0.97177 0.79866 0.97075 0.88118 1.22106 0.87916 0.97945 0.92553 1.44681 1.00422 1.86659 1.01340 1.20026 0.98098 1.45001 0.82474 0.90450 1.25786 0.93534 1.00577 1.02210 1.70909 1.35286 1.35183 1.14343 0.83705 0.74760 0.76892 0.74257 1.22265 1.22212 1.22726 1.22408 0.94934 0.99576 0.87201 1.23188 0.93558 0.94351 0.86677 0.90460 1.86472 1.45582 1.52972 1.51177 1.20610 0.99081 0.89190 0.89884 1.19244 0.92466 0.93634 1.17434 0.89090 0.90365 0.88661 0.84812 0.84988 0.75802 0.94659 0.92568 0.92610 0.93233 0.95120 0.77434 0.84376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.45 10.44 36.00 0.38 -0.07 16 2 C 0.13 1.14 7.28 -81.62 -0.59 0.54 16 3 N -0.43 -3.72 7.17 33.88 0.24 -3.47 16 4 H 0.44 2.06 8.96 -182.74 -1.64 0.42 16 5 N -0.31 -3.99 12.69 33.31 0.42 -3.57 16 6 C 0.12 1.70 7.49 -82.97 -0.62 1.08 16 7 C -0.11 -1.49 10.06 -39.47 -0.40 -1.88 16 8 C -0.04 -0.61 9.39 -39.61 -0.37 -0.98 16 9 C -0.17 -2.51 5.86 -105.06 -0.62 -3.13 16 10 C 0.56 9.68 7.75 -12.48 -0.10 9.58 16 11 O -0.56 -10.75 15.90 5.28 0.08 -10.67 16 12 N -0.69 -11.71 4.76 -52.66 -0.25 -11.96 16 13 C 0.14 2.49 3.31 -65.66 -0.22 2.28 16 14 H 0.10 1.69 7.54 -51.93 -0.39 1.30 16 15 C 0.12 2.49 6.95 -2.41 -0.02 2.47 16 16 N -0.60 -14.35 3.29 -169.93 -0.56 -14.90 16 17 C -0.33 -9.27 10.43 -15.06 -0.16 -9.43 16 18 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 19 C -0.02 -0.58 5.43 -17.43 -0.09 -0.68 16 20 N -0.92 -28.34 13.70 55.49 0.76 -27.58 16 21 Si 1.07 26.09 24.66 -169.99 -4.19 21.89 16 22 H -0.29 -6.63 6.76 56.52 0.38 -6.25 16 23 H -0.29 -6.82 6.71 56.52 0.38 -6.44 16 24 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 25 C 0.08 1.73 4.71 -3.06 -0.01 1.71 16 26 C 0.08 1.33 4.12 -24.90 -0.10 1.23 16 27 H 0.08 1.11 8.14 -51.92 -0.42 0.68 16 28 O -0.56 -7.81 12.67 -35.23 -0.45 -8.26 16 29 C 0.03 0.45 9.64 -38.69 -0.37 0.08 16 30 C -0.22 -2.69 6.25 -105.23 -0.66 -3.35 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.13 1.67 6.27 -52.49 -0.33 1.34 16 36 H 0.41 6.64 6.31 -40.82 -0.26 6.39 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.26 8.11 8.73 -40.82 -0.36 7.75 16 40 H 0.05 1.06 7.74 -51.93 -0.40 0.66 16 41 H 0.03 0.66 3.75 -51.93 -0.19 0.47 16 42 H 0.38 3.76 9.11 45.56 0.42 4.17 16 43 H 0.14 1.69 7.58 -52.49 -0.40 1.29 16 LS Contribution 355.48 15.07 5.36 5.36 Total: -1.00 -36.96 355.48 -8.31 -45.26 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -5.77 Total: 8.46 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -3.95 Total: -0.56 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: 0.62 Total: -61.48 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.36 Total: -18.93 kcal Atomic # 14 Polarization: 26.09 SS G_CDS: -4.19 Total: 21.89 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.96 -8.31 -45.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083632207.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.854 kcal (2) G-P(sol) polarization free energy of solvation -36.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds