Wall clock time and date at job start Tue Mar 31 2020 04:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39745 * 119.43047 * 2 1 4 4 C 1.38944 * 119.29725 * 179.72558 * 3 2 1 5 5 C 1.47215 * 120.86173 * 179.97438 * 4 3 2 6 6 O 1.21636 * 120.00361 * 179.97438 * 5 4 3 7 7 N 1.34784 * 119.99807 * 0.02562 * 5 4 3 8 8 C 1.46505 * 119.99846 * 180.02562 * 7 5 4 9 9 H 1.08998 * 110.88611 * 31.10996 * 8 7 5 10 10 C 1.54910 * 111.00192 * 267.19385 * 8 7 5 11 11 N 1.47429 * 104.82997 * 204.91537 * 10 8 7 12 12 C 1.36934 * 125.64711 * 204.09990 * 11 10 8 13 13 H 1.07998 * 119.99835 * 0.02562 * 12 11 10 14 14 C 1.38812 * 119.99847 * 180.02562 * 12 11 10 15 15 N 1.31617 * 120.00175 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00016 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47541 * 59.99387 * 16 14 12 18 18 H 1.48500 * 109.47284 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46780 * 299.99748 * 16 14 12 20 20 C 1.47021 * 108.70104 * 24.12929 * 11 10 8 21 21 C 1.54318 * 107.27322 * 358.93548 * 20 11 10 22 22 H 1.08999 * 110.72429 * 219.44590 * 21 20 11 23 23 O 1.42905 * 110.87087 * 96.24543 * 21 20 11 24 24 C 1.46553 * 118.27828 * 359.97438 * 4 3 2 25 25 N 1.31978 * 132.72106 * 179.97438 * 24 4 3 26 26 C 1.33748 * 109.16949 * 180.02562 * 25 24 4 27 27 C 1.34952 * 108.60486 * 359.97438 * 26 25 24 28 28 N 1.37000 * 107.15570 * 0.02562 * 27 26 25 29 29 C 1.35114 * 119.43006 * 179.72941 * 2 1 3 30 30 H 1.08992 * 109.47398 * 89.99907 * 1 2 3 31 31 H 1.09003 * 109.47297 * 210.00430 * 1 2 3 32 32 H 1.09000 * 109.47143 * 329.99938 * 1 2 3 33 33 H 1.08001 * 120.34568 * 359.74424 * 3 2 1 34 34 H 0.96997 * 120.00061 * 359.97438 * 7 5 4 35 35 H 1.09004 * 110.36538 * 323.75409 * 10 8 7 36 36 H 1.08998 * 110.36974 * 86.07784 * 10 8 7 37 37 H 0.96996 * 120.00125 * 180.02562 * 15 14 12 38 38 H 1.09004 * 109.87911 * 239.52058 * 20 11 10 39 39 H 1.08999 * 110.01552 * 118.43481 * 20 11 10 40 40 H 0.96702 * 113.99845 * 66.39030 * 23 21 20 41 41 H 1.07994 * 125.69385 * 180.02562 * 26 25 24 42 42 H 1.07999 * 126.42667 * 180.02562 * 27 26 25 43 43 H 1.07999 * 119.13696 * 0.25685 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1936 1.2171 0.0000 4 6 3.5830 1.2139 0.0058 5 6 4.3411 2.4758 0.0054 6 8 5.5573 2.4548 0.0110 7 7 3.6876 3.6546 -0.0001 8 6 4.4420 4.9105 -0.0010 9 1 5.3913 4.7931 -0.5236 10 6 4.6623 5.4269 1.4428 11 7 4.8444 6.8828 1.2991 12 6 5.5071 7.6949 2.1802 13 1 5.9512 7.2763 3.0712 14 6 5.6080 9.0563 1.9281 15 7 5.0663 9.5665 0.8425 16 14 6.5126 10.1641 3.1297 17 1 7.9232 9.7161 3.2505 18 1 6.4779 11.5638 2.6349 19 1 5.8552 10.0933 4.4594 20 6 4.1961 7.3183 0.0535 21 6 3.6053 6.0614 -0.6193 22 1 3.7434 6.1013 -1.6998 23 8 2.2219 5.9122 -0.2936 24 6 4.2743 -0.0783 0.0123 25 7 5.5516 -0.4105 0.0181 26 6 5.6587 -1.7437 0.0220 27 6 4.4183 -2.2753 0.0191 28 7 3.5312 -1.2312 0.0127 29 6 2.1708 -1.1768 0.0056 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6499 2.1503 -0.0042 34 1 2.7177 3.6714 -0.0042 35 1 3.7894 5.2127 2.0596 36 1 5.5542 4.9739 1.8758 37 1 5.1372 10.5176 0.6662 38 1 4.9315 7.7804 -0.6052 39 1 3.3999 8.0287 0.2760 40 1 1.6552 6.6067 -0.6565 41 1 6.5834 -2.3015 0.0274 42 1 4.1712 -3.3266 0.0214 43 1 1.6076 -2.0983 0.0057 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083667502.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:16 Heat of formation + Delta-G solvation = 47.764834 kcal Electronic energy + Delta-G solvation = -27892.410852 eV Core-core repulsion = 23940.369975 eV Total energy + Delta-G solvation = -3952.040876 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.88174 -39.64583 -38.08021 -37.64046 -34.83222 -34.03878 -33.65003 -32.36681 -31.50666 -29.19795 -28.33982 -27.09585 -26.96688 -24.96112 -24.11665 -22.49370 -21.73051 -20.76693 -20.34599 -19.94075 -18.17367 -17.64856 -17.04570 -16.84742 -16.46583 -16.12801 -15.49948 -15.08675 -14.77648 -14.43896 -14.28654 -14.14059 -13.94773 -13.88690 -13.77066 -13.16039 -12.95206 -12.69115 -12.60627 -12.48686 -12.35485 -12.16074 -11.66629 -11.27096 -11.01747 -10.85074 -10.80434 -10.48304 -10.45092 -10.15261 -10.09915 -9.78640 -9.65726 -9.30407 -8.91544 -8.67561 -8.60552 -8.09822 -6.84580 -5.72084 -3.04785 0.09799 1.02079 2.26544 2.56049 2.90196 3.27017 3.43672 3.47157 3.49042 3.63331 3.89548 4.05851 4.27267 4.41106 4.52024 4.55547 4.66488 4.93759 5.06475 5.14643 5.16486 5.25653 5.31490 5.39453 5.44514 5.50476 5.57279 5.64419 5.73975 5.77122 5.89882 6.10611 6.14132 6.24259 6.44163 6.62045 6.71276 6.78339 6.97132 7.35367 7.46917 7.74605 7.79262 7.83543 8.07347 8.22660 8.48702 9.20925 9.80948 10.45457 11.40205 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.019539 B = 0.002799 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.666675 B =10002.333020 C =10904.020463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.119 4.119 3 C -0.057 4.057 4 C -0.078 4.078 5 C 0.554 3.446 6 O -0.504 6.504 7 N -0.703 5.703 8 C 0.141 3.859 9 H 0.107 0.893 10 C 0.131 3.869 11 N -0.600 5.600 12 C -0.224 4.224 13 H 0.079 0.921 14 C -0.009 4.009 15 N -0.927 5.927 16 Si 0.915 3.085 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.285 1.285 20 C 0.155 3.845 21 C 0.068 3.932 22 H 0.061 0.939 23 O -0.569 6.569 24 C 0.250 3.750 25 N -0.457 5.457 26 C 0.027 3.973 27 C -0.101 4.101 28 N -0.370 5.370 29 C 0.073 3.927 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.151 0.849 34 H 0.404 0.596 35 H 0.026 0.974 36 H 0.045 0.955 37 H 0.253 0.747 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.379 0.621 41 H 0.182 0.818 42 H 0.184 0.816 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.880 -22.693 -5.559 26.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.123 4.123 3 C -0.081 4.081 4 C -0.084 4.084 5 C 0.339 3.661 6 O -0.378 6.378 7 N -0.356 5.356 8 C 0.035 3.965 9 H 0.125 0.875 10 C 0.004 3.996 11 N -0.327 5.327 12 C -0.352 4.352 13 H 0.097 0.903 14 C -0.205 4.205 15 N -0.576 5.576 16 Si 0.745 3.255 17 H -0.211 1.211 18 H -0.216 1.216 19 H -0.212 1.212 20 C 0.029 3.971 21 C 0.008 3.992 22 H 0.079 0.921 23 O -0.375 6.375 24 C 0.003 3.997 25 N -0.175 5.175 26 C -0.124 4.124 27 C -0.230 4.230 28 N -0.043 5.043 29 C -0.050 4.050 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.169 0.831 34 H 0.240 0.760 35 H 0.044 0.956 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.227 0.773 41 H 0.199 0.801 42 H 0.201 0.799 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.998 -22.525 -5.222 25.605 hybrid contribution -0.879 0.426 0.324 1.029 sum -11.877 -22.099 -4.898 25.562 Atomic orbital electron populations 1.20714 0.88498 1.03810 1.03141 1.19273 0.97559 0.91209 1.04218 1.21657 0.92096 0.98801 0.95573 1.20285 0.92253 0.90244 1.05584 1.17573 0.87517 0.82786 0.78250 1.90902 1.12629 1.86833 1.47464 1.45620 1.10634 1.04733 1.74628 1.22380 0.94719 0.80333 0.99037 0.87466 1.21843 0.98635 0.86032 0.93136 1.44263 1.63943 1.01103 1.23388 1.19059 1.26769 0.88589 1.00791 0.90297 1.24782 1.00992 0.96680 0.98051 1.69897 1.49400 1.11982 1.26274 0.86148 0.79565 0.79661 0.80115 1.21069 1.21612 1.21183 1.21850 0.96843 0.90552 0.87831 1.23523 0.81226 0.97106 0.97326 0.92067 1.86226 1.18048 1.53582 1.79648 1.21560 0.86817 0.86197 1.05126 1.70859 1.13994 1.12793 1.19822 1.22717 0.97123 0.90485 1.02027 1.22656 0.89136 0.93001 1.18251 1.42875 1.05926 1.08810 1.46639 1.21409 0.81274 1.00289 1.02005 0.90466 0.91089 0.90271 0.83136 0.76002 0.95626 0.93634 0.93700 0.92626 0.92885 0.77284 0.80094 0.79913 0.81976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.43 9.97 36.00 0.36 -0.07 16 2 C -0.12 -0.91 5.82 -105.17 -0.61 -1.52 16 3 C -0.06 -0.57 9.26 -38.76 -0.36 -0.93 16 4 C -0.08 -1.12 6.06 -102.64 -0.62 -1.74 16 5 C 0.55 9.69 7.77 -12.61 -0.10 9.59 16 6 O -0.50 -11.00 15.84 5.25 0.08 -10.92 16 7 N -0.70 -11.24 5.12 -52.86 -0.27 -11.51 16 8 C 0.14 2.69 3.31 -65.78 -0.22 2.47 16 9 H 0.11 2.21 7.54 -51.93 -0.39 1.82 16 10 C 0.13 2.94 6.92 -2.53 -0.02 2.93 16 11 N -0.60 -15.65 3.39 -170.07 -0.58 -16.23 16 12 C -0.22 -6.39 10.28 -15.06 -0.15 -6.54 16 13 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 14 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 15 N -0.93 -26.98 10.31 55.49 0.57 -26.41 16 16 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 C 0.15 3.63 5.14 -3.07 -0.02 3.62 16 21 C 0.07 1.22 4.19 -24.90 -0.10 1.12 16 22 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 23 O -0.57 -8.70 12.15 -35.23 -0.43 -9.13 16 24 C 0.25 3.83 7.67 -154.13 -1.18 2.65 16 25 N -0.46 -7.76 10.70 -11.32 -0.12 -7.88 16 26 C 0.03 0.33 11.83 -17.88 -0.21 0.12 16 27 C -0.10 -0.97 11.76 -16.41 -0.19 -1.17 16 28 N -0.37 -4.18 2.94 -61.10 -0.18 -4.36 16 29 C 0.07 0.58 10.48 -16.75 -0.18 0.40 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.19 8.05 -51.93 -0.42 -0.22 16 32 H 0.08 0.31 8.08 -51.93 -0.42 -0.11 16 33 H 0.15 1.17 6.48 -52.49 -0.34 0.83 16 34 H 0.40 5.41 5.68 -40.82 -0.23 5.17 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.06 1.44 7.38 -51.93 -0.38 1.06 16 39 H 0.05 1.35 7.44 -51.93 -0.39 0.96 16 40 H 0.38 4.43 9.12 45.56 0.42 4.84 16 41 H 0.18 1.58 8.06 -52.49 -0.42 1.15 16 42 H 0.18 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.16 0.65 8.03 -52.49 -0.42 0.23 16 LS Contribution 359.89 15.07 5.42 5.42 Total: -1.00 -37.82 359.89 -8.88 -46.70 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -4.66 Total: 6.35 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: -3.70 Total: 10.55 kcal Atomic # 7 Polarization: -65.81 SS G_CDS: -0.58 Total: -66.38 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.34 Total: -20.05 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -37.82 -8.88 -46.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083667502.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.466 kcal (2) G-P(sol) polarization free energy of solvation -37.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds