Wall clock time and date at job start Tue Mar 31 2020 04:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99720 * 2 1 4 4 H 1.48499 * 109.47128 * 275.23292 * 3 2 1 5 5 H 1.48496 * 109.47367 * 155.22705 * 3 2 1 6 6 H 1.48505 * 109.47147 * 35.23023 * 3 2 1 7 7 C 1.38817 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99475 * 339.93567 * 7 2 1 9 9 N 1.36930 * 119.99887 * 159.93771 * 7 2 1 10 10 C 1.46617 * 119.89245 * 331.35158 * 9 7 2 11 11 C 1.53104 * 108.00994 * 237.30766 * 10 9 7 12 12 C 1.53005 * 109.44587 * 301.02015 * 11 10 9 13 13 H 1.08999 * 113.42658 * 275.04067 * 12 11 10 14 14 C 1.54657 * 110.83972 * 143.89210 * 12 11 10 15 15 N 1.47803 * 85.78984 * 270.23324 * 14 12 11 16 16 C 1.34783 * 135.01016 * 153.78929 * 15 14 12 17 17 O 1.21515 * 120.00001 * 180.02562 * 16 15 14 18 18 C 1.48167 * 120.00141 * 0.02562 * 16 15 14 19 19 C 1.39243 * 119.65684 * 180.02562 * 18 16 15 20 20 C 1.39754 * 118.90116 * 180.02562 * 19 18 16 21 21 C 1.48148 * 120.88924 * 180.02562 * 20 19 18 22 22 N 1.34775 * 120.00143 * 180.02562 * 21 20 19 23 23 O 1.21517 * 119.99482 * 359.97438 * 21 20 19 24 24 C 1.39807 * 118.22353 * 359.97438 * 20 19 18 25 25 C 1.38502 * 119.18884 * 0.02562 * 24 20 19 26 26 N 1.31470 * 121.03520 * 359.71846 * 25 24 20 27 27 C 1.46818 * 89.97754 * 333.80323 * 15 14 12 28 28 H 1.08998 * 111.56425 * 274.48343 * 27 15 14 29 29 C 1.45678 * 119.89052 * 151.08102 * 9 7 2 30 30 H 0.96992 * 120.00615 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.75279 * 356.93140 * 10 9 7 32 32 H 1.09001 * 109.75891 * 117.62506 * 10 9 7 33 33 H 1.09000 * 109.47429 * 61.01594 * 11 10 9 34 34 H 1.09006 * 109.47328 * 181.03116 * 11 10 9 35 35 H 1.08997 * 113.81690 * 24.44909 * 14 12 11 36 36 H 1.08996 * 113.82067 * 156.01354 * 14 12 11 37 37 H 1.07996 * 120.55210 * 0.02562 * 19 18 16 38 38 H 0.96999 * 119.99970 * 359.97438 * 22 21 20 39 39 H 0.97001 * 119.99909 * 180.02562 * 22 21 20 40 40 H 1.08004 * 120.40453 * 180.02562 * 24 20 19 41 41 H 1.07999 * 119.48243 * 180.02562 * 25 24 20 42 42 H 1.09002 * 108.71289 * 261.76828 * 29 9 7 43 43 H 1.08994 * 108.71611 * 19.78643 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3870 2.1103 -1.3942 5 1 3.5985 1.4110 0.5866 6 1 1.5072 2.6183 0.8077 7 6 2.0104 -1.2021 0.0005 8 1 1.5195 -2.1089 0.3218 9 7 3.3174 -1.2382 -0.4062 10 6 3.8044 -0.2637 -1.3875 11 6 4.3733 -1.0369 -2.5803 12 6 5.5053 -1.9489 -2.1029 13 1 6.4713 -1.4472 -2.0462 14 6 5.5058 -3.2819 -2.8872 15 7 4.6002 -3.7784 -1.8299 16 6 3.6458 -4.7276 -1.7606 17 8 3.0487 -4.9138 -0.7188 18 6 3.3246 -5.5439 -2.9547 19 6 2.3370 -6.5221 -2.8752 20 6 2.0472 -7.2833 -4.0109 21 6 1.0046 -8.3352 -3.9759 22 7 0.7401 -9.0590 -5.0816 23 8 0.3885 -8.5459 -2.9499 24 6 2.7669 -7.0248 -5.1813 25 6 3.7335 -6.0329 -5.1747 26 7 3.9778 -5.3317 -4.0898 27 6 5.1710 -2.8089 -0.8866 28 1 6.0708 -3.1967 -0.4090 29 6 4.2209 -2.2409 0.1418 30 1 -0.4850 0.8399 -0.0004 31 1 2.9809 0.3694 -1.7179 32 1 4.5851 0.3513 -0.9399 33 1 3.5857 -1.6407 -3.0310 34 1 4.7598 -0.3338 -3.3182 35 1 5.0397 -3.2144 -3.8702 36 1 6.4748 -3.7806 -2.9070 37 1 1.8036 -6.6899 -1.9513 38 1 1.2322 -8.8910 -5.9004 39 1 0.0571 -9.7474 -5.0587 40 1 2.5715 -7.5917 -6.0796 41 1 4.2920 -5.8290 -6.0764 42 1 4.8005 -1.7873 0.9458 43 1 3.6283 -3.0555 0.5581 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084875312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:29 Heat of formation + Delta-G solvation = 46.213466 kcal Electronic energy + Delta-G solvation = -28609.843162 eV Core-core repulsion = 24657.735014 eV Total energy + Delta-G solvation = -3952.108149 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.10003 -40.35731 -39.14674 -37.64406 -35.50380 -34.38515 -32.76793 -31.90250 -31.56724 -31.08239 -29.13410 -27.17089 -25.45771 -24.48591 -23.59560 -23.12917 -21.88940 -21.14127 -20.17530 -18.82197 -17.74383 -17.53619 -17.10124 -16.44784 -16.08725 -15.96342 -15.70544 -15.24969 -15.19889 -15.04985 -14.74975 -14.26020 -14.14268 -13.73046 -13.55305 -13.35993 -13.16131 -12.71329 -12.43194 -12.22349 -12.14746 -11.82983 -11.32595 -11.09604 -10.84178 -10.75516 -10.64288 -10.36470 -10.26316 -10.13798 -10.03793 -9.82294 -9.57698 -9.46644 -9.36509 -9.24933 -8.59619 -8.24908 -6.84361 -5.82288 -3.18972 0.22914 0.64037 2.40976 2.84653 3.02308 3.10170 3.37110 3.54125 3.57268 3.79045 3.91604 4.21760 4.36323 4.52212 4.60805 4.62221 4.71422 4.90717 5.02703 5.14347 5.29097 5.34010 5.44628 5.51398 5.60658 5.64052 5.69943 5.79029 5.86424 6.00881 6.05068 6.22015 6.27350 6.34249 6.37617 6.42416 6.65540 6.70626 6.83567 6.86117 7.00527 7.45816 7.80154 8.02275 8.13822 8.45225 8.49876 9.10388 9.85068 10.18713 11.33886 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015085 B = 0.003699 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.707628 B = 7568.255482 C = 8500.922635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.021 3.979 3 Si 0.883 3.117 4 H -0.291 1.291 5 H -0.269 1.269 6 H -0.305 1.305 7 C -0.252 4.252 8 H 0.085 0.915 9 N -0.597 5.597 10 C 0.127 3.873 11 C -0.117 4.117 12 C -0.114 4.114 13 H 0.091 0.909 14 C 0.114 3.886 15 N -0.609 5.609 16 C 0.590 3.410 17 O -0.516 6.516 18 C 0.097 3.903 19 C -0.055 4.055 20 C -0.100 4.100 21 C 0.565 3.435 22 N -0.848 5.848 23 O -0.521 6.521 24 C -0.128 4.128 25 C 0.093 3.907 26 N -0.436 5.436 27 C 0.131 3.869 28 H 0.082 0.918 29 C 0.143 3.857 30 H 0.261 0.739 31 H 0.073 0.927 32 H 0.028 0.972 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.163 0.837 38 H 0.401 0.599 39 H 0.408 0.592 40 H 0.142 0.858 41 H 0.168 0.832 42 H 0.027 0.973 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.469 -14.571 -16.837 25.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.177 4.177 3 Si 0.714 3.286 4 H -0.219 1.219 5 H -0.194 1.194 6 H -0.233 1.233 7 C -0.381 4.381 8 H 0.103 0.897 9 N -0.320 5.320 10 C 0.001 3.999 11 C -0.156 4.156 12 C -0.134 4.134 13 H 0.109 0.891 14 C -0.009 4.009 15 N -0.344 5.344 16 C 0.377 3.623 17 O -0.390 6.390 18 C -0.041 4.041 19 C -0.077 4.077 20 C -0.111 4.111 21 C 0.349 3.651 22 N -0.413 5.413 23 O -0.396 6.396 24 C -0.148 4.148 25 C -0.066 4.066 26 N -0.148 5.148 27 C 0.027 3.973 28 H 0.100 0.900 29 C 0.016 3.984 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.180 0.820 38 H 0.231 0.769 39 H 0.240 0.760 40 H 0.160 0.840 41 H 0.185 0.815 42 H 0.044 0.956 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.147 -14.102 -15.436 24.181 hybrid contribution -0.260 0.017 -0.686 0.734 sum 11.888 -14.086 -16.122 24.487 Atomic orbital electron populations 1.69850 1.05727 1.26256 1.53529 1.25283 0.95203 0.97411 0.99803 0.86929 0.80221 0.84808 0.76665 1.21889 1.19439 1.23339 1.18982 0.84625 0.94736 1.39726 0.89696 1.43809 1.08418 1.33952 1.45862 1.21236 0.97482 0.91984 0.89178 1.21849 0.96641 0.98197 0.98909 1.22930 0.99758 0.95093 0.95570 0.89116 1.23531 0.92602 0.91027 0.93700 1.49505 1.34964 1.33920 1.15982 1.17220 0.80057 0.78744 0.86292 1.90842 1.50842 1.67483 1.29865 1.21330 0.94355 0.95571 0.92877 1.22302 0.94296 0.91444 0.99626 1.20240 0.97985 0.98025 0.94840 1.18109 0.82317 0.81038 0.83620 1.43671 1.43440 1.40555 1.13617 1.90889 1.50138 1.67565 1.30989 1.22479 0.96055 0.98672 0.97640 1.22813 0.95517 0.91627 0.96644 1.67617 1.24443 1.24016 0.98705 1.22509 0.95578 0.86090 0.93093 0.89981 1.20290 0.92339 0.93376 0.92395 0.92954 0.90885 0.95429 0.91435 0.92323 0.89052 0.90420 0.81981 0.76946 0.75991 0.84042 0.81453 0.95555 0.90142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.21 13.97 55.49 0.78 -28.44 16 2 C 0.02 0.64 5.22 -17.43 -0.09 0.55 16 3 Si 0.88 22.93 24.38 -169.99 -4.14 18.79 16 4 H -0.29 -7.24 6.71 56.52 0.38 -6.86 16 5 H -0.27 -6.78 6.55 56.52 0.37 -6.41 16 6 H -0.30 -8.09 7.11 56.52 0.40 -7.68 16 7 C -0.25 -7.51 9.96 -15.06 -0.15 -7.66 16 8 H 0.09 2.82 8.02 -52.48 -0.42 2.40 16 9 N -0.60 -14.85 2.76 -174.88 -0.48 -15.34 16 10 C 0.13 2.78 4.15 -3.92 -0.02 2.77 16 11 C -0.12 -2.03 5.66 -26.67 -0.15 -2.18 16 12 C -0.11 -1.64 4.39 -89.97 -0.40 -2.03 16 13 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 14 C 0.11 1.46 7.00 -3.00 -0.02 1.44 16 15 N -0.61 -10.35 3.35 -174.82 -0.59 -10.94 16 16 C 0.59 11.28 7.98 -12.18 -0.10 11.18 16 17 O -0.52 -11.83 15.46 5.35 0.08 -11.75 16 18 C 0.10 1.52 6.75 -83.05 -0.56 0.96 16 19 C -0.06 -0.83 9.20 -38.64 -0.36 -1.18 16 20 C -0.10 -1.13 5.91 -104.67 -0.62 -1.74 16 21 C 0.56 6.37 8.07 -12.19 -0.10 6.27 16 22 N -0.85 -4.99 8.83 30.60 0.27 -4.72 16 23 O -0.52 -8.37 17.28 5.35 0.09 -8.27 16 24 C -0.13 -0.95 9.62 -38.90 -0.37 -1.33 16 25 C 0.09 0.79 11.17 -17.61 -0.20 0.60 16 26 N -0.44 -5.48 7.90 -9.85 -0.08 -5.56 16 27 C 0.13 2.19 4.23 -69.43 -0.29 1.90 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 29 C 0.14 3.05 6.19 -5.45 -0.03 3.02 16 30 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 31 H 0.07 1.78 4.30 -51.93 -0.22 1.56 16 32 H 0.03 0.58 7.21 -51.93 -0.37 0.21 16 33 H 0.07 1.32 7.69 -51.93 -0.40 0.92 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.15 6.98 -51.93 -0.36 0.79 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.16 2.76 7.33 -52.49 -0.38 2.38 16 38 H 0.40 0.98 6.97 -40.82 -0.28 0.69 16 39 H 0.41 1.91 8.93 -40.82 -0.36 1.55 16 40 H 0.14 0.39 6.53 -52.48 -0.34 0.05 16 41 H 0.17 0.78 8.06 -52.49 -0.42 0.35 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 1.94 6.36 -51.93 -0.33 1.61 16 LS Contribution 347.16 15.07 5.23 5.23 Total: -1.00 -39.52 347.16 -7.50 -47.02 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -5.21 Total: 1.40 kcal Atomic # 6 Polarization: 16.01 SS G_CDS: -3.45 Total: 12.56 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: -0.10 Total: -64.98 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: 0.18 Total: -20.02 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.14 Total: 18.79 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -39.52 -7.50 -47.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084875312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.235 kcal (2) G-P(sol) polarization free energy of solvation -39.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds