Wall clock time and date at job start Tue Mar 31 2020 04:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99720 * 2 1 4 4 H 1.48499 * 109.47128 * 275.23292 * 3 2 1 5 5 H 1.48496 * 109.47367 * 155.22705 * 3 2 1 6 6 H 1.48505 * 109.47147 * 35.23023 * 3 2 1 7 7 C 1.38817 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99475 * 339.93567 * 7 2 1 9 9 N 1.36930 * 119.99887 * 159.93771 * 7 2 1 10 10 C 1.46617 * 119.89245 * 331.35158 * 9 7 2 11 11 C 1.53104 * 108.00994 * 237.30766 * 10 9 7 12 12 C 1.53005 * 109.44587 * 301.02015 * 11 10 9 13 13 H 1.08999 * 113.42658 * 275.04067 * 12 11 10 14 14 C 1.54657 * 110.83972 * 143.89210 * 12 11 10 15 15 N 1.47803 * 85.78984 * 270.23324 * 14 12 11 16 16 C 1.34783 * 135.01016 * 153.78929 * 15 14 12 17 17 O 1.21515 * 120.00001 * 180.02562 * 16 15 14 18 18 C 1.48167 * 120.00141 * 0.02562 * 16 15 14 19 19 C 1.39243 * 119.65684 * 180.02562 * 18 16 15 20 20 C 1.39754 * 118.90116 * 180.02562 * 19 18 16 21 21 C 1.48148 * 120.88924 * 180.02562 * 20 19 18 22 22 N 1.34775 * 120.00143 * 180.02562 * 21 20 19 23 23 O 1.21517 * 119.99482 * 359.97438 * 21 20 19 24 24 C 1.39807 * 118.22353 * 359.97438 * 20 19 18 25 25 C 1.38502 * 119.18884 * 0.02562 * 24 20 19 26 26 N 1.31470 * 121.03520 * 359.71846 * 25 24 20 27 27 C 1.46818 * 89.97754 * 333.80323 * 15 14 12 28 28 H 1.08998 * 111.56425 * 274.48343 * 27 15 14 29 29 C 1.45678 * 119.89052 * 151.08102 * 9 7 2 30 30 H 0.96992 * 120.00615 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.75279 * 356.93140 * 10 9 7 32 32 H 1.09001 * 109.75891 * 117.62506 * 10 9 7 33 33 H 1.09000 * 109.47429 * 61.01594 * 11 10 9 34 34 H 1.09006 * 109.47328 * 181.03116 * 11 10 9 35 35 H 1.08997 * 113.81690 * 24.44909 * 14 12 11 36 36 H 1.08996 * 113.82067 * 156.01354 * 14 12 11 37 37 H 1.07996 * 120.55210 * 0.02562 * 19 18 16 38 38 H 0.96999 * 119.99970 * 359.97438 * 22 21 20 39 39 H 0.97001 * 119.99909 * 180.02562 * 22 21 20 40 40 H 1.08004 * 120.40453 * 180.02562 * 24 20 19 41 41 H 1.07999 * 119.48243 * 180.02562 * 25 24 20 42 42 H 1.09002 * 108.71289 * 261.76828 * 29 9 7 43 43 H 1.08994 * 108.71611 * 19.78643 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3870 2.1103 -1.3942 5 1 3.5985 1.4110 0.5866 6 1 1.5072 2.6183 0.8077 7 6 2.0104 -1.2021 0.0005 8 1 1.5195 -2.1089 0.3218 9 7 3.3174 -1.2382 -0.4062 10 6 3.8044 -0.2637 -1.3875 11 6 4.3733 -1.0369 -2.5803 12 6 5.5053 -1.9489 -2.1029 13 1 6.4713 -1.4472 -2.0462 14 6 5.5058 -3.2819 -2.8872 15 7 4.6002 -3.7784 -1.8299 16 6 3.6458 -4.7276 -1.7606 17 8 3.0487 -4.9138 -0.7188 18 6 3.3246 -5.5439 -2.9547 19 6 2.3370 -6.5221 -2.8752 20 6 2.0472 -7.2833 -4.0109 21 6 1.0046 -8.3352 -3.9759 22 7 0.7401 -9.0590 -5.0816 23 8 0.3885 -8.5459 -2.9499 24 6 2.7669 -7.0248 -5.1813 25 6 3.7335 -6.0329 -5.1747 26 7 3.9778 -5.3317 -4.0898 27 6 5.1710 -2.8089 -0.8866 28 1 6.0708 -3.1967 -0.4090 29 6 4.2209 -2.2409 0.1418 30 1 -0.4850 0.8399 -0.0004 31 1 2.9809 0.3694 -1.7179 32 1 4.5851 0.3513 -0.9399 33 1 3.5857 -1.6407 -3.0310 34 1 4.7598 -0.3338 -3.3182 35 1 5.0397 -3.2144 -3.8702 36 1 6.4748 -3.7806 -2.9070 37 1 1.8036 -6.6899 -1.9513 38 1 1.2322 -8.8910 -5.9004 39 1 0.0571 -9.7474 -5.0587 40 1 2.5715 -7.5917 -6.0796 41 1 4.2920 -5.8290 -6.0764 42 1 4.8005 -1.7873 0.9458 43 1 3.6283 -3.0555 0.5581 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084875312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:28 Heat of formation + Delta-G solvation = 11.211379 kcal Electronic energy + Delta-G solvation = -28611.360967 eV Core-core repulsion = 24657.735014 eV Total energy + Delta-G solvation = -3953.625953 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.19844 -41.48107 -40.14003 -39.05521 -37.30370 -35.24836 -34.02233 -33.54516 -32.73743 -32.61183 -30.58843 -28.79420 -26.39362 -25.68978 -25.42742 -24.39184 -22.91366 -22.71857 -21.33318 -19.85453 -19.17832 -18.64094 -18.37338 -17.87764 -17.27385 -17.21516 -16.94028 -16.89707 -16.31976 -16.16344 -15.71795 -15.54075 -15.43061 -15.28346 -15.00156 -14.70584 -14.43888 -14.38032 -14.04273 -13.91635 -13.50115 -13.12615 -12.82549 -12.68706 -12.57939 -12.26738 -12.15002 -11.74187 -11.54958 -11.45808 -11.37367 -11.20723 -10.97963 -10.84309 -10.75096 -10.50612 -10.40806 -9.59562 -8.89839 -8.17968 -5.52306 -0.66243 -0.32062 1.27909 1.41193 1.45915 1.52632 1.73244 1.91911 2.23919 2.40474 2.75657 2.92455 3.03232 3.32058 3.42803 3.50870 3.59498 3.72501 3.79591 3.87465 4.04814 4.13845 4.27816 4.36722 4.47756 4.55953 4.59272 4.59842 4.67560 4.77432 4.82747 4.86820 4.91277 5.01473 5.08787 5.19719 5.25265 5.42712 5.56547 5.71693 5.87572 6.10476 6.24524 6.55300 6.74696 6.94751 7.10338 7.12230 7.64268 7.96746 9.03424 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015085 B = 0.003699 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.707628 B = 7568.255482 C = 8500.922635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.043 4.043 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.250 1.250 6 H -0.312 1.312 7 C -0.251 4.251 8 H 0.017 0.983 9 N -0.611 5.611 10 C 0.117 3.883 11 C -0.110 4.110 12 C -0.100 4.100 13 H 0.143 0.857 14 C 0.128 3.872 15 N -0.617 5.617 16 C 0.571 3.429 17 O -0.585 6.585 18 C 0.070 3.930 19 C -0.087 4.087 20 C -0.109 4.109 21 C 0.561 3.439 22 N -0.813 5.813 23 O -0.585 6.585 24 C -0.087 4.087 25 C 0.103 3.897 26 N -0.439 5.439 27 C 0.118 3.882 28 H 0.120 0.880 29 C 0.141 3.859 30 H 0.262 0.738 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.033 0.967 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.423 0.577 39 H 0.418 0.582 40 H 0.205 0.795 41 H 0.226 0.774 42 H 0.040 0.960 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.349 -13.864 -22.349 31.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.236 4.236 3 Si 0.796 3.204 4 H -0.192 1.192 5 H -0.174 1.174 6 H -0.241 1.241 7 C -0.381 4.381 8 H 0.035 0.965 9 N -0.335 5.335 10 C -0.007 4.007 11 C -0.149 4.149 12 C -0.119 4.119 13 H 0.161 0.839 14 C 0.008 3.992 15 N -0.350 5.350 16 C 0.360 3.640 17 O -0.466 6.466 18 C -0.065 4.065 19 C -0.110 4.110 20 C -0.120 4.120 21 C 0.346 3.654 22 N -0.379 5.379 23 O -0.465 6.465 24 C -0.108 4.108 25 C -0.057 4.057 26 N -0.152 5.152 27 C 0.014 3.986 28 H 0.138 0.862 29 C 0.015 3.985 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.257 0.743 39 H 0.252 0.748 40 H 0.222 0.778 41 H 0.242 0.758 42 H 0.057 0.943 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 17.122 -13.404 -21.046 30.262 hybrid contribution -1.831 -0.374 0.878 2.065 sum 15.291 -13.778 -20.169 28.817 Atomic orbital electron populations 1.70035 1.08031 1.27406 1.55787 1.26105 0.95989 1.01808 0.99740 0.85562 0.78867 0.78181 0.77754 1.19220 1.17396 1.24109 1.18686 0.87108 0.92648 1.39653 0.96501 1.43854 1.06919 1.35530 1.47207 1.21402 0.97196 0.91824 0.90256 1.21751 0.96886 0.98684 0.97545 1.22943 1.00490 0.95115 0.93365 0.83926 1.23766 0.93250 0.89562 0.92656 1.49806 1.34717 1.32774 1.17688 1.17963 0.79944 0.79278 0.86808 1.90791 1.53356 1.69721 1.32698 1.20730 0.96268 0.96302 0.93246 1.22049 0.95364 0.93713 0.99830 1.20326 0.98818 0.97733 0.95098 1.18247 0.81889 0.81292 0.83972 1.43393 1.42813 1.38953 1.12705 1.90869 1.52472 1.69492 1.33676 1.23144 0.92874 0.97215 0.97526 1.23863 0.95081 0.90096 0.96683 1.67577 1.24171 1.24936 0.98492 1.22728 0.95167 0.87325 0.93341 0.86208 1.20329 0.92131 0.91403 0.94617 0.92915 0.93624 0.92882 0.94774 0.87966 0.88439 0.86264 0.86678 0.74323 0.74849 0.77791 0.75805 0.94265 0.95013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -66.21 13.97 21.65 0.30 -65.91 16 2 C -0.04 -2.72 5.22 84.86 0.44 -2.28 16 3 Si 0.97 48.74 24.38 68.60 1.67 50.41 16 4 H -0.27 -12.24 6.71 99.48 0.67 -11.57 16 5 H -0.25 -11.67 6.55 99.48 0.65 -11.01 16 6 H -0.31 -15.94 7.11 99.48 0.71 -15.23 16 7 C -0.25 -16.23 9.96 84.04 0.84 -15.39 16 8 H 0.02 1.29 8.02 -2.91 -0.02 1.27 16 9 N -0.61 -31.56 2.76 -707.20 -1.95 -33.51 16 10 C 0.12 4.95 4.15 86.39 0.36 5.31 16 11 C -0.11 -3.47 5.66 30.63 0.17 -3.29 16 12 C -0.10 -2.41 4.39 -10.31 -0.05 -2.46 16 13 H 0.14 2.15 8.14 -2.39 -0.02 2.13 16 14 C 0.13 2.75 7.00 86.34 0.60 3.36 16 15 N -0.62 -21.05 3.35 -825.29 -2.76 -23.81 16 16 C 0.57 23.91 7.98 86.88 0.69 24.60 16 17 O -0.59 -31.07 15.46 -3.76 -0.06 -31.13 16 18 C 0.07 2.34 6.75 41.90 0.28 2.62 16 19 C -0.09 -2.93 9.20 22.88 0.21 -2.72 16 20 C -0.11 -2.42 5.91 -19.90 -0.12 -2.54 16 21 C 0.56 12.75 8.07 86.88 0.70 13.45 16 22 N -0.81 -7.38 8.83 -175.40 -1.55 -8.93 16 23 O -0.59 -20.59 17.28 -3.77 -0.07 -20.66 16 24 C -0.09 -0.89 9.62 22.71 0.22 -0.67 16 25 C 0.10 1.22 11.17 84.81 0.95 2.17 16 26 N -0.44 -10.06 7.90 -185.07 -1.46 -11.52 16 27 C 0.12 3.80 4.23 43.85 0.19 3.98 16 28 H 0.12 2.99 8.14 -2.39 -0.02 2.98 16 29 C 0.14 6.32 6.19 85.91 0.53 6.85 16 30 H 0.26 16.79 8.31 -92.71 -0.77 16.02 16 31 H 0.05 2.17 4.30 -2.39 -0.01 2.16 16 32 H 0.05 2.00 7.21 -2.39 -0.02 1.99 16 33 H 0.03 1.30 7.69 -2.39 -0.02 1.28 16 34 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 35 H 0.10 2.03 6.98 -2.39 -0.02 2.01 16 36 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.12 4.83 7.33 -2.91 -0.02 4.81 16 38 H 0.42 -0.11 6.97 -92.71 -0.65 -0.76 16 39 H 0.42 2.97 8.93 -92.71 -0.83 2.14 16 40 H 0.21 -0.53 6.53 -2.91 -0.02 -0.55 16 41 H 0.23 0.18 8.06 -2.91 -0.02 0.16 16 42 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.03 1.71 6.36 -2.39 -0.02 1.70 16 Total: -1.00 -106.54 347.16 -0.33 -106.87 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -0.48 Total: 5.18 kcal Atomic # 6 Polarization: 26.98 SS G_CDS: 6.02 Total: 33.01 kcal Atomic # 7 Polarization: -136.26 SS G_CDS: -7.42 Total: -143.68 kcal Atomic # 8 Polarization: -51.66 SS G_CDS: -0.12 Total: -51.78 kcal Atomic # 14 Polarization: 48.74 SS G_CDS: 1.67 Total: 50.41 kcal Total: -106.54 -0.33 -106.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084875312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.078 kcal (2) G-P(sol) polarization free energy of solvation -106.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -106.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds