Wall clock time and date at job start Tue Mar 31 2020 06:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99683 * 2 1 4 4 H 1.48504 * 109.46788 * 239.99887 * 3 2 1 5 5 H 1.48501 * 109.47028 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47097 * 120.00000 * 3 2 1 7 7 C 1.38802 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99692 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00574 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00364 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.47197 * 35.00334 * 10 9 7 12 12 C 1.52996 * 109.46993 * 274.99963 * 10 9 7 13 13 C 1.53002 * 109.46969 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47143 * 60.00070 * 13 12 10 15 15 C 1.52996 * 109.47131 * 299.99831 * 14 13 12 16 16 C 1.52997 * 109.47007 * 155.00102 * 10 9 7 17 17 H 1.09004 * 109.47261 * 60.00083 * 16 10 9 18 18 N 1.46506 * 109.47289 * 299.99956 * 16 10 9 19 19 C 1.34767 * 120.00003 * 154.99849 * 18 16 10 20 20 O 1.21626 * 120.00450 * 0.02562 * 19 18 16 21 21 C 1.47316 * 119.99826 * 180.02562 * 19 18 16 22 22 C 1.39003 * 120.90686 * 0.02562 * 21 19 18 23 23 C 1.39716 * 119.29339 * 179.97438 * 22 21 19 24 24 C 1.35260 * 121.08034 * 0.02562 * 23 22 21 25 25 N 1.35712 * 121.57344 * 359.97438 * 24 23 22 26 26 N 1.40209 * 134.09270 * 180.02562 * 25 24 23 27 27 N 1.29029 * 106.96271 * 179.23118 * 26 25 24 28 28 N 1.28593 * 110.77857 * 0.66319 * 27 26 25 29 29 C 1.32038 * 110.21847 * 359.40395 * 28 27 26 30 30 H 0.97001 * 120.00111 * 359.97438 * 1 2 3 31 31 H 0.97006 * 119.99487 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.47552 * 60.00060 * 12 10 9 33 33 H 1.09004 * 109.47298 * 299.99931 * 12 10 9 34 34 H 1.09004 * 109.46930 * 300.00004 * 13 12 10 35 35 H 1.09002 * 109.47067 * 180.02562 * 13 12 10 36 36 H 1.09001 * 109.46832 * 180.02562 * 14 13 12 37 37 H 1.08992 * 109.47303 * 60.00452 * 14 13 12 38 38 H 1.09004 * 109.47298 * 300.00283 * 15 14 13 39 39 H 1.09004 * 109.47552 * 180.02562 * 15 14 13 40 40 H 0.96996 * 119.99678 * 335.00636 * 18 16 10 41 41 H 1.07998 * 120.35557 * 0.02665 * 22 21 19 42 42 H 1.08001 * 119.45893 * 179.97438 * 23 22 21 43 43 H 1.07999 * 119.21353 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9688 -3.5505 0.5900 12 6 2.4220 -4.0355 -1.4364 13 6 3.1865 -5.3608 -1.4365 14 6 2.3089 -6.4559 -0.8271 15 6 1.9450 -6.0771 0.6099 16 6 1.1810 -4.7521 0.6101 17 1 0.2703 -4.8584 0.0207 18 7 0.8325 -4.3894 1.9861 19 6 -0.2854 -4.8862 2.5514 20 8 -1.0049 -5.6361 1.9195 21 6 -0.6361 -4.5211 3.9349 22 6 0.1722 -3.6653 4.6741 23 6 -0.1928 -3.3411 5.9832 24 6 -1.3171 -3.8464 6.5401 25 7 -2.1346 -4.6851 5.8546 26 7 -3.3322 -5.3467 6.1609 27 7 -3.6762 -6.0090 5.1083 28 7 -2.8148 -5.8493 4.1670 29 6 -1.8475 -5.0438 4.5656 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3880 0.0005 32 1 3.0470 -3.2552 -1.8708 33 1 1.5113 -4.1418 -2.0259 34 1 4.0972 -5.2550 -0.8469 35 1 3.4462 -5.6305 -2.4602 36 1 2.8537 -7.4000 -0.8267 37 1 1.3983 -6.5618 -1.4166 38 1 2.8557 -5.9713 1.1995 39 1 1.3201 -6.8575 1.0443 40 1 1.4064 -3.7916 2.4902 41 1 1.0723 -3.2547 4.2410 42 1 0.4334 -2.6767 6.5602 43 1 -1.5707 -3.5753 7.5543 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085211053.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:27 Heat of formation + Delta-G solvation = 120.435565 kcal Electronic energy + Delta-G solvation = -28315.845460 eV Core-core repulsion = 24399.248574 eV Total energy + Delta-G solvation = -3916.596886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.45152 -40.01188 -38.71077 -37.74793 -34.29828 -34.07113 -33.74033 -32.14993 -31.23765 -30.91058 -29.20275 -27.74500 -25.55386 -24.46090 -23.82762 -23.54056 -22.10134 -21.13709 -20.55435 -19.74123 -18.75633 -17.77061 -17.64454 -17.03354 -16.97968 -16.09665 -15.67156 -15.15747 -14.73664 -14.46341 -14.04271 -13.91009 -13.77389 -13.64019 -13.24040 -13.10133 -12.99746 -12.69572 -12.60908 -12.49494 -12.25767 -12.13609 -11.50410 -11.14455 -11.05321 -10.98274 -10.89077 -10.80049 -10.61797 -10.42862 -10.38356 -10.25786 -9.88551 -9.74033 -9.68044 -9.00161 -8.89128 -8.65435 -7.07356 -5.85620 -3.16221 -0.21195 0.31134 1.45694 2.02307 2.41657 3.08976 3.34146 3.39169 3.40395 3.41650 3.41941 3.80533 4.11753 4.29387 4.47677 4.59851 4.85960 5.01353 5.08795 5.09565 5.20486 5.25691 5.36746 5.40837 5.45658 5.47465 5.64679 5.66485 5.77027 5.83877 5.90158 5.93544 6.07735 6.08548 6.27045 6.40571 6.43277 6.43739 6.53503 6.76001 6.82618 7.01133 7.59112 7.69606 8.27308 8.31093 8.37103 9.42978 9.99165 10.34359 11.35902 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.009997 B = 0.004156 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.102375 B = 6735.252253 C = 8721.887845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.009 4.009 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.723 5.723 10 C 0.174 3.826 11 H 0.051 0.949 12 C -0.133 4.133 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.124 4.124 16 C 0.142 3.858 17 H 0.088 0.912 18 N -0.698 5.698 19 C 0.560 3.440 20 O -0.508 6.508 21 C -0.090 4.090 22 C -0.017 4.017 23 C -0.139 4.139 24 C 0.121 3.879 25 N -0.308 5.308 26 N -0.113 5.113 27 N -0.012 5.012 28 N -0.289 5.289 29 C 0.274 3.726 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.401 0.599 41 H 0.167 0.833 42 H 0.175 0.825 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.060 -8.402 11.786 15.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.205 4.205 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.063 3.937 11 H 0.069 0.931 12 C -0.174 4.174 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.164 4.164 16 C 0.037 3.963 17 H 0.106 0.894 18 N -0.349 5.349 19 C 0.344 3.656 20 O -0.383 6.383 21 C -0.100 4.100 22 C -0.043 4.043 23 C -0.162 4.162 24 C -0.006 4.006 25 N -0.089 5.089 26 N -0.096 5.096 27 N -0.005 5.005 28 N -0.146 5.146 29 C 0.016 3.984 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.236 0.764 41 H 0.184 0.816 42 H 0.192 0.808 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 4.187 -9.657 11.493 15.585 hybrid contribution 1.128 2.034 0.371 2.355 sum 5.315 -7.623 11.864 15.070 Atomic orbital electron populations 1.69663 1.05088 1.25842 1.57005 1.24732 0.95398 0.97588 1.02806 0.86332 0.78534 0.83788 0.77841 1.21273 1.21785 1.21319 1.19146 0.90868 0.83967 1.43470 0.91216 1.42441 1.05852 0.99451 1.88610 1.20465 0.93819 0.85686 0.93725 0.93059 1.22221 1.00053 0.95569 0.99584 1.21586 0.98490 0.95657 1.00041 1.21470 1.00007 0.98052 0.95683 1.21872 0.99994 0.97146 0.97347 1.21378 0.99397 0.94217 0.81266 0.89370 1.45730 1.24429 1.48960 1.15746 1.17353 0.81911 0.81667 0.84666 1.90897 1.49784 1.34989 1.62665 1.20432 0.91874 1.01170 0.96478 1.22106 0.98338 0.90860 0.93009 1.21048 0.96643 1.02264 0.96237 1.21751 0.89512 0.90232 0.99110 1.48974 1.17854 1.30617 1.11425 1.82775 0.94783 1.13007 1.19011 1.78038 1.17351 1.11062 0.94040 1.75295 1.00740 1.17920 1.20667 1.23630 0.96534 0.94904 0.83371 0.93394 0.78072 0.91544 0.92365 0.92387 0.92653 0.92316 0.91842 0.91965 0.91732 0.76362 0.81601 0.80752 0.79989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.48 13.06 55.49 0.72 -25.76 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 3 Si 0.90 20.83 29.55 -169.99 -5.02 15.81 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.24 -6.05 9.93 -15.06 -0.15 -6.20 16 8 H 0.07 1.67 7.83 -52.48 -0.41 1.26 16 9 N -0.72 -16.08 4.95 -53.43 -0.26 -16.34 16 10 C 0.17 2.98 2.29 -67.93 -0.16 2.83 16 11 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 12 C -0.13 -2.16 5.50 -26.73 -0.15 -2.31 16 13 C -0.12 -1.52 5.92 -26.73 -0.16 -1.68 16 14 C -0.11 -1.39 5.92 -26.73 -0.16 -1.55 16 15 C -0.12 -1.63 5.49 -26.76 -0.15 -1.77 16 16 C 0.14 2.22 1.97 -67.95 -0.13 2.08 16 17 H 0.09 1.62 7.58 -51.93 -0.39 1.23 16 18 N -0.70 -10.12 4.86 -54.94 -0.27 -10.38 16 19 C 0.56 9.07 7.74 -12.57 -0.10 8.97 16 20 O -0.51 -10.21 15.94 5.25 0.08 -10.13 16 21 C -0.09 -1.22 6.06 -102.71 -0.62 -1.84 16 22 C -0.02 -0.15 9.63 -38.75 -0.37 -0.52 16 23 C -0.14 -0.83 9.92 -40.09 -0.40 -1.22 16 24 C 0.12 0.91 11.15 -16.90 -0.19 0.72 16 25 N -0.31 -3.95 3.94 -10.99 -0.04 -4.00 16 26 N -0.11 -1.70 13.99 60.35 0.84 -0.86 16 27 N -0.01 -0.21 13.36 60.35 0.81 0.60 16 28 N -0.29 -5.36 11.75 32.20 0.38 -4.98 16 29 C 0.27 4.28 7.85 -154.52 -1.21 3.06 16 30 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.39 9.63 7.80 -40.82 -0.32 9.31 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.40 4.98 6.71 -40.82 -0.27 4.71 16 41 H 0.17 1.09 6.49 -52.49 -0.34 0.74 16 42 H 0.18 0.32 8.06 -52.49 -0.42 -0.11 16 43 H 0.18 0.65 8.06 -52.49 -0.42 0.23 16 LS Contribution 361.65 15.07 5.45 5.45 Total: -1.00 -34.28 361.65 -6.87 -41.15 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -5.52 Total: 9.18 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -4.04 Total: 0.25 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: 2.18 Total: -61.71 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.08 Total: -10.13 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.28 -6.87 -41.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085211053.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.584 kcal (2) G-P(sol) polarization free energy of solvation -34.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds