Wall clock time and date at job start Tue Mar 31 2020 06:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46508 * 119.99479 * 2 1 4 4 C 1.52997 * 109.47280 * 95.83367 * 3 2 1 5 5 H 1.09003 * 112.95978 * 67.40266 * 4 3 2 6 6 C 1.53939 * 113.77280 * 295.72279 * 4 3 2 7 7 C 1.53938 * 86.29036 * 222.08846 * 6 4 3 8 8 N 1.47575 * 113.76878 * 199.07447 * 4 3 2 9 9 C 1.36935 * 134.49777 * 318.93430 * 8 4 3 10 10 H 1.08000 * 119.99706 * 5.81570 * 9 8 4 11 11 C 1.38813 * 120.00171 * 185.81201 * 9 8 4 12 12 N 1.31612 * 120.00005 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99971 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47049 * 359.97438 * 13 11 9 15 15 H 1.48491 * 109.47323 * 119.99955 * 13 11 9 16 16 H 1.48498 * 109.46882 * 240.00229 * 13 11 9 17 17 C 1.34772 * 120.00766 * 180.02562 * 2 1 3 18 18 O 1.21588 * 120.00223 * 182.18937 * 17 2 1 19 19 C 1.47531 * 119.99623 * 2.19030 * 17 2 1 20 20 C 1.39531 * 120.24331 * 24.90354 * 19 17 2 21 21 C 1.38214 * 120.25985 * 179.66035 * 20 19 17 22 22 C 1.37964 * 120.70311 * 0.65909 * 21 20 19 23 23 C 1.39596 * 120.12003 * 359.64011 * 22 21 20 24 24 N 1.35982 * 133.39677 * 180.02562 * 23 22 21 25 25 C 1.30733 * 109.51596 * 179.97438 * 24 23 22 26 26 O 1.35276 * 125.05745 * 180.02562 * 25 24 23 27 27 N 1.36481 * 109.88940 * 0.02562 * 25 24 23 28 28 H 0.96995 * 126.32388 * 180.02562 * 27 25 24 29 29 C 1.37847 * 107.34856 * 359.97438 * 27 25 24 30 30 H 1.08991 * 109.47492 * 84.10426 * 1 2 3 31 31 H 1.09008 * 109.46561 * 204.09874 * 1 2 3 32 32 H 1.08993 * 109.47479 * 324.09462 * 1 2 3 33 33 H 1.09003 * 109.46796 * 335.83429 * 3 2 1 34 34 H 1.09002 * 109.46999 * 215.83841 * 3 2 1 35 35 H 1.09000 * 113.74181 * 336.43705 * 6 4 3 36 36 H 1.09001 * 113.74259 * 107.63731 * 6 4 3 37 37 H 1.09007 * 113.76938 * 137.90701 * 7 6 4 38 38 H 1.08997 * 113.77186 * 269.19069 * 7 6 4 39 39 H 0.97000 * 120.00182 * 179.97438 * 12 11 9 40 40 H 1.08003 * 119.86915 * 359.97438 * 20 19 17 41 41 H 1.08001 * 119.64505 * 180.30011 * 21 20 19 42 42 H 1.08001 * 119.93315 * 179.65845 * 22 21 20 43 43 H 0.96700 * 114.00342 * 269.96102 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.5794 1.6373 1.4350 5 1 3.3134 0.9574 1.8675 6 6 1.3705 1.9083 2.3488 7 6 2.1790 3.0977 2.8977 8 7 2.9117 3.0639 1.6144 9 6 3.6152 3.9846 0.8847 10 1 3.9892 3.7256 -0.0949 11 6 3.8476 5.2509 1.4038 12 7 3.3913 5.5667 2.5972 13 14 4.8066 6.5070 0.4079 14 1 5.2056 5.9085 -0.8913 15 1 3.9557 7.6992 0.1637 16 1 6.0215 6.9116 1.1599 17 6 2.1390 -1.1671 -0.0005 18 8 3.3542 -1.1674 0.0397 19 6 1.4022 -2.4443 -0.0499 20 6 0.1215 -2.4960 -0.6013 21 6 -0.5662 -3.6937 -0.6541 22 6 -0.0060 -4.8504 -0.1525 23 6 1.2715 -4.8234 0.4097 24 7 2.0659 -5.7742 0.9700 25 6 3.1924 -5.2323 1.3524 26 8 4.2103 -5.8944 1.9486 27 7 3.1888 -3.8990 1.0608 28 1 3.9043 -3.2694 1.2412 29 6 1.9810 -3.6126 0.4614 30 1 -0.3634 0.1055 -1.0221 31 1 -0.3633 -0.9382 0.4197 32 1 -0.3634 0.8323 0.6026 33 1 1.5670 2.0522 -0.4207 34 1 3.1006 1.1670 -0.6017 35 1 0.4698 2.2014 1.8095 36 1 1.1899 1.1225 3.0822 37 1 1.5871 4.0015 3.0433 38 1 2.7948 2.8489 3.7620 39 1 3.5540 6.4514 2.9602 40 1 -0.3321 -1.5975 -0.9930 41 1 -1.5550 -3.7232 -1.0875 42 1 -0.5567 -5.7784 -0.1953 43 1 4.1550 -5.9142 2.9138 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085644903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:54 Heat of formation + Delta-G solvation = 88.044728 kcal Electronic energy + Delta-G solvation = -28064.835099 eV Core-core repulsion = 24114.540890 eV Total energy + Delta-G solvation = -3950.294209 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.49843 -40.10716 -38.36508 -37.74761 -36.79320 -35.27824 -33.44415 -32.18696 -30.80135 -29.51492 -28.23808 -27.86310 -26.71301 -23.95765 -23.38409 -22.90289 -22.43608 -21.84037 -19.87953 -19.18976 -18.96847 -18.13041 -17.52147 -16.76548 -16.44019 -16.09986 -15.92073 -15.60389 -14.98422 -14.86563 -14.45672 -14.40892 -14.07926 -13.63854 -13.61657 -13.34619 -12.94956 -12.48257 -12.40337 -12.32036 -12.20027 -11.92366 -11.47875 -11.34105 -11.08380 -10.99536 -10.81810 -10.73768 -10.54085 -10.45569 -9.92127 -9.85100 -9.70436 -9.51905 -8.82584 -8.71557 -8.46777 -8.36660 -6.88046 -5.78243 -3.10000 0.29563 1.15398 2.00583 2.27424 2.87896 3.02376 3.37906 3.44114 3.46056 3.46467 3.59576 4.16812 4.44519 4.49205 4.60373 4.82473 4.93795 5.00195 5.06654 5.17294 5.27060 5.37018 5.42994 5.49964 5.61217 5.64029 5.74231 5.89316 5.92490 6.03204 6.08866 6.13787 6.21473 6.37132 6.40645 6.46608 6.55086 6.67141 6.78103 7.23341 7.29829 7.37709 7.41993 7.46608 7.56121 7.97003 8.16961 9.04012 9.70391 10.60293 11.39615 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.018833 B = 0.002859 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.357359 B = 9791.863513 C =10447.334998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.594 5.594 3 C 0.119 3.881 4 C 0.130 3.870 5 H 0.046 0.954 6 C -0.160 4.160 7 C 0.165 3.835 8 N -0.602 5.602 9 C -0.223 4.223 10 H 0.080 0.920 11 C -0.007 4.007 12 N -0.920 5.920 13 Si 0.909 3.091 14 H -0.279 1.279 15 H -0.290 1.290 16 H -0.291 1.291 17 C 0.554 3.446 18 O -0.544 6.544 19 C -0.120 4.120 20 C -0.083 4.083 21 C -0.135 4.135 22 C -0.040 4.040 23 C 0.046 3.954 24 N -0.486 5.486 25 C 0.453 3.547 26 O -0.441 6.441 27 N -0.585 5.585 28 H 0.434 0.566 29 C 0.109 3.891 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.066 0.934 38 H 0.027 0.973 39 H 0.253 0.747 40 H 0.159 0.841 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.639 -20.188 -3.050 23.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.326 5.326 3 C -0.004 4.004 4 C 0.022 3.978 5 H 0.063 0.937 6 C -0.198 4.198 7 C 0.040 3.960 8 N -0.328 5.328 9 C -0.350 4.350 10 H 0.097 0.903 11 C -0.203 4.203 12 N -0.567 5.567 13 Si 0.739 3.261 14 H -0.204 1.204 15 H -0.217 1.217 16 H -0.218 1.218 17 C 0.342 3.658 18 O -0.423 6.423 19 C -0.126 4.126 20 C -0.103 4.103 21 C -0.156 4.156 22 C -0.060 4.060 23 C -0.072 4.072 24 N -0.217 5.217 25 C 0.148 3.852 26 O -0.243 6.243 27 N -0.208 5.208 28 H 0.275 0.725 29 C -0.004 4.004 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.044 0.956 39 H 0.063 0.937 40 H 0.176 0.824 41 H 0.157 0.843 42 H 0.153 0.847 43 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -9.790 -20.866 -3.507 23.314 hybrid contribution 1.373 1.897 0.215 2.351 sum -8.418 -18.969 -3.292 21.012 Atomic orbital electron populations 1.22614 0.80017 1.04429 1.01701 1.47675 1.06932 1.06156 1.71799 1.21831 0.96821 0.82492 0.99288 1.22487 0.94055 0.88556 0.92657 0.93684 1.23782 0.97538 0.99444 0.99022 1.22127 0.90774 0.94637 0.88436 1.46123 1.62124 1.03241 1.21334 1.19066 1.27329 0.91126 0.97518 0.90264 1.24797 1.01031 0.97855 0.96660 1.69837 1.49842 1.20456 1.16594 0.86094 0.79471 0.81433 0.79075 1.20420 1.21725 1.21766 1.18201 0.87099 0.83448 0.77032 1.90764 1.13434 1.87269 1.50828 1.18885 0.96053 0.91164 1.06490 1.22042 0.92024 0.99677 0.96510 1.20898 1.01001 0.91531 1.02148 1.20450 0.91401 0.99203 0.94928 1.18788 0.96113 0.87968 1.04320 1.70730 1.00988 1.30307 1.19708 1.20376 0.88085 0.79216 0.97515 1.84833 1.40966 1.72125 1.26392 1.43485 1.16601 1.09912 1.50847 0.72460 1.18324 0.86392 0.95757 0.99960 0.91917 0.89252 0.90364 0.89526 0.90624 0.90907 0.93430 0.91526 0.95554 0.93725 0.82404 0.84328 0.84662 0.72995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.51 8.50 59.85 0.51 1.02 16 2 N -0.59 -8.27 2.76 -182.81 -0.50 -8.77 16 3 C 0.12 2.08 5.28 -4.04 -0.02 2.06 16 4 C 0.13 2.67 4.54 -66.87 -0.30 2.37 16 5 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 6 C -0.16 -2.92 7.19 -25.80 -0.19 -3.11 16 7 C 0.17 3.88 7.39 -2.85 -0.02 3.86 16 8 N -0.60 -15.24 3.58 -169.74 -0.61 -15.85 16 9 C -0.22 -6.19 10.51 -15.06 -0.16 -6.35 16 10 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 11 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 12 N -0.92 -27.28 11.56 55.49 0.64 -26.64 16 13 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 16 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 17 C 0.55 8.38 7.45 -12.47 -0.09 8.29 16 18 O -0.54 -10.11 15.49 5.29 0.08 -10.02 16 19 C -0.12 -1.48 5.54 -104.95 -0.58 -2.07 16 20 C -0.08 -0.73 7.51 -39.11 -0.29 -1.03 16 21 C -0.14 -1.00 9.99 -39.69 -0.40 -1.40 16 22 C -0.04 -0.37 10.09 -39.18 -0.40 -0.76 16 23 C 0.05 0.57 7.22 -84.69 -0.61 -0.04 16 24 N -0.49 -6.33 11.32 -12.24 -0.14 -6.47 16 25 C 0.45 5.28 9.40 -88.85 -0.83 4.44 16 26 O -0.44 -3.82 13.63 -17.52 -0.24 -4.06 16 27 N -0.59 -7.24 6.07 -11.70 -0.07 -7.31 16 28 H 0.43 5.26 8.10 -40.82 -0.33 4.93 16 29 C 0.11 1.42 6.87 -83.66 -0.57 0.84 16 30 H 0.06 0.45 7.29 -51.93 -0.38 0.07 16 31 H 0.09 0.69 4.83 -51.92 -0.25 0.44 16 32 H 0.08 0.75 6.40 -51.93 -0.33 0.42 16 33 H 0.09 1.49 8.03 -51.93 -0.42 1.07 16 34 H 0.08 1.47 7.64 -51.93 -0.40 1.08 16 35 H 0.07 1.22 6.80 -51.93 -0.35 0.86 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 1.69 7.45 -51.93 -0.39 1.30 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.16 1.04 4.34 -52.48 -0.23 0.82 16 41 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 42 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 43 H 0.41 1.25 9.06 45.56 0.41 1.66 16 LS Contribution 354.85 15.07 5.35 5.35 Total: -1.00 -36.38 354.85 -8.89 -45.27 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -4.32 Total: 3.50 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: -4.06 Total: 7.85 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: -0.68 Total: -65.04 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.16 Total: -14.09 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.38 -8.89 -45.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085644903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.319 kcal (2) G-P(sol) polarization free energy of solvation -36.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds