Wall clock time and date at job start Tue Mar 31 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46508 * 119.99479 * 2 1 4 4 C 1.52997 * 109.47280 * 95.83367 * 3 2 1 5 5 H 1.09003 * 112.95978 * 67.40266 * 4 3 2 6 6 C 1.53939 * 113.77280 * 295.72279 * 4 3 2 7 7 C 1.53938 * 86.29036 * 222.08846 * 6 4 3 8 8 N 1.47575 * 113.76878 * 199.07447 * 4 3 2 9 9 C 1.36935 * 134.49777 * 318.93430 * 8 4 3 10 10 H 1.08000 * 119.99706 * 5.81570 * 9 8 4 11 11 C 1.38813 * 120.00171 * 185.81201 * 9 8 4 12 12 N 1.31612 * 120.00005 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99971 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47049 * 359.97438 * 13 11 9 15 15 H 1.48491 * 109.47323 * 119.99955 * 13 11 9 16 16 H 1.48498 * 109.46882 * 240.00229 * 13 11 9 17 17 C 1.34772 * 120.00766 * 180.02562 * 2 1 3 18 18 O 1.21588 * 120.00223 * 182.18937 * 17 2 1 19 19 C 1.47531 * 119.99623 * 2.19030 * 17 2 1 20 20 C 1.39531 * 120.24331 * 24.90354 * 19 17 2 21 21 C 1.38214 * 120.25985 * 179.66035 * 20 19 17 22 22 C 1.37964 * 120.70311 * 0.65909 * 21 20 19 23 23 C 1.39596 * 120.12003 * 359.64011 * 22 21 20 24 24 N 1.35982 * 133.39677 * 180.02562 * 23 22 21 25 25 C 1.30733 * 109.51596 * 179.97438 * 24 23 22 26 26 O 1.35276 * 125.05745 * 180.02562 * 25 24 23 27 27 N 1.36481 * 109.88940 * 0.02562 * 25 24 23 28 28 H 0.96995 * 126.32388 * 180.02562 * 27 25 24 29 29 C 1.37847 * 107.34856 * 359.97438 * 27 25 24 30 30 H 1.08991 * 109.47492 * 84.10426 * 1 2 3 31 31 H 1.09008 * 109.46561 * 204.09874 * 1 2 3 32 32 H 1.08993 * 109.47479 * 324.09462 * 1 2 3 33 33 H 1.09003 * 109.46796 * 335.83429 * 3 2 1 34 34 H 1.09002 * 109.46999 * 215.83841 * 3 2 1 35 35 H 1.09000 * 113.74181 * 336.43705 * 6 4 3 36 36 H 1.09001 * 113.74259 * 107.63731 * 6 4 3 37 37 H 1.09007 * 113.76938 * 137.90701 * 7 6 4 38 38 H 1.08997 * 113.77186 * 269.19069 * 7 6 4 39 39 H 0.97000 * 120.00182 * 179.97438 * 12 11 9 40 40 H 1.08003 * 119.86915 * 359.97438 * 20 19 17 41 41 H 1.08001 * 119.64505 * 180.30011 * 21 20 19 42 42 H 1.08001 * 119.93315 * 179.65845 * 22 21 20 43 43 H 0.96700 * 114.00342 * 269.96102 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.5794 1.6373 1.4350 5 1 3.3134 0.9574 1.8675 6 6 1.3705 1.9083 2.3488 7 6 2.1790 3.0977 2.8977 8 7 2.9117 3.0639 1.6144 9 6 3.6152 3.9846 0.8847 10 1 3.9892 3.7256 -0.0949 11 6 3.8476 5.2509 1.4038 12 7 3.3913 5.5667 2.5972 13 14 4.8066 6.5070 0.4079 14 1 5.2056 5.9085 -0.8913 15 1 3.9557 7.6992 0.1637 16 1 6.0215 6.9116 1.1599 17 6 2.1390 -1.1671 -0.0005 18 8 3.3542 -1.1674 0.0397 19 6 1.4022 -2.4443 -0.0499 20 6 0.1215 -2.4960 -0.6013 21 6 -0.5662 -3.6937 -0.6541 22 6 -0.0060 -4.8504 -0.1525 23 6 1.2715 -4.8234 0.4097 24 7 2.0659 -5.7742 0.9700 25 6 3.1924 -5.2323 1.3524 26 8 4.2103 -5.8944 1.9486 27 7 3.1888 -3.8990 1.0608 28 1 3.9043 -3.2694 1.2412 29 6 1.9810 -3.6126 0.4614 30 1 -0.3634 0.1055 -1.0221 31 1 -0.3633 -0.9382 0.4197 32 1 -0.3634 0.8323 0.6026 33 1 1.5670 2.0522 -0.4207 34 1 3.1006 1.1670 -0.6017 35 1 0.4698 2.2014 1.8095 36 1 1.1899 1.1225 3.0822 37 1 1.5871 4.0015 3.0433 38 1 2.7948 2.8489 3.7620 39 1 3.5540 6.4514 2.9602 40 1 -0.3321 -1.5975 -0.9930 41 1 -1.5550 -3.7232 -1.0875 42 1 -0.5567 -5.7784 -0.1953 43 1 4.1550 -5.9142 2.9138 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085644903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:53 Heat of formation + Delta-G solvation = 58.489987 kcal Electronic energy + Delta-G solvation = -28066.116689 eV Core-core repulsion = 24114.540890 eV Total energy + Delta-G solvation = -3951.575799 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.32419 -41.23201 -39.63078 -38.93025 -37.59035 -36.42835 -34.37555 -34.18085 -31.76068 -30.35843 -29.87213 -29.35186 -27.69810 -25.37498 -25.04080 -23.89370 -23.37316 -22.87622 -21.14313 -20.66233 -19.85929 -19.00994 -18.65214 -18.31980 -17.32521 -17.29533 -17.09683 -16.79563 -16.53350 -15.86062 -15.73982 -15.46121 -15.35568 -14.97034 -14.83233 -14.22055 -14.07193 -13.88676 -13.77545 -13.38899 -13.19308 -13.00589 -12.96771 -12.69170 -12.62484 -12.47039 -12.24516 -11.99780 -11.85279 -11.76940 -11.58876 -11.46555 -11.32226 -10.89387 -10.80542 -9.75885 -9.41753 -9.21147 -8.91718 -7.93025 -5.25807 -0.48491 0.38956 1.20697 1.42855 1.43205 1.44736 1.54478 1.82343 1.98203 2.46933 2.71662 2.79610 3.26503 3.30449 3.44446 3.66020 3.85251 3.94367 4.10715 4.16765 4.21303 4.24879 4.27998 4.40290 4.49441 4.64959 4.73340 4.77938 4.86370 4.89560 4.95763 5.03384 5.04120 5.16552 5.20373 5.35135 5.39616 5.43926 5.54044 5.68267 5.77475 5.80160 5.91872 6.36568 6.57325 6.59702 6.90916 7.06029 7.59247 8.55653 9.24880 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.018833 B = 0.002859 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.357359 B = 9791.863513 C =10447.334998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.591 5.591 3 C 0.136 3.864 4 C 0.130 3.870 5 H 0.020 0.980 6 C -0.122 4.122 7 C 0.156 3.844 8 N -0.628 5.628 9 C -0.231 4.231 10 H 0.080 0.920 11 C -0.065 4.065 12 N -0.953 5.953 13 Si 0.974 3.026 14 H -0.267 1.267 15 H -0.287 1.287 16 H -0.296 1.296 17 C 0.549 3.451 18 O -0.593 6.593 19 C -0.144 4.144 20 C -0.065 4.065 21 C -0.118 4.118 22 C -0.038 4.038 23 C 0.024 3.976 24 N -0.508 5.508 25 C 0.450 3.550 26 O -0.444 6.444 27 N -0.592 5.592 28 H 0.429 0.571 29 C 0.083 3.917 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.047 0.953 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.043 0.957 38 H 0.007 0.993 39 H 0.248 0.752 40 H 0.187 0.813 41 H 0.185 0.815 42 H 0.158 0.842 43 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.757 -21.414 -4.653 25.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.321 5.321 3 C 0.012 3.988 4 C 0.023 3.977 5 H 0.038 0.962 6 C -0.160 4.160 7 C 0.031 3.969 8 N -0.354 5.354 9 C -0.359 4.359 10 H 0.098 0.902 11 C -0.258 4.258 12 N -0.602 5.602 13 Si 0.803 3.197 14 H -0.191 1.191 15 H -0.214 1.214 16 H -0.223 1.223 17 C 0.339 3.661 18 O -0.475 6.475 19 C -0.151 4.151 20 C -0.084 4.084 21 C -0.138 4.138 22 C -0.058 4.058 23 C -0.094 4.094 24 N -0.241 5.241 25 C 0.145 3.855 26 O -0.250 6.250 27 N -0.215 5.215 28 H 0.270 0.730 29 C -0.029 4.029 30 H 0.114 0.886 31 H 0.129 0.871 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.066 0.934 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.024 0.976 39 H 0.057 0.943 40 H 0.204 0.796 41 H 0.203 0.797 42 H 0.176 0.824 43 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -12.962 -22.136 -5.109 26.156 hybrid contribution 2.313 2.168 0.732 3.254 sum -10.649 -19.967 -4.377 23.049 Atomic orbital electron populations 1.23013 0.76721 1.05776 1.04132 1.47674 1.08760 1.04351 1.71315 1.21352 0.96501 0.84556 0.96408 1.22553 0.94323 0.85642 0.95159 0.96205 1.23530 0.96840 0.97268 0.98313 1.22111 0.91212 0.95936 0.87622 1.46522 1.61955 1.05124 1.21836 1.19407 1.26759 0.91867 0.97870 0.90206 1.25604 1.02488 0.99853 0.97867 1.70009 1.51377 1.20594 1.18206 0.85069 0.77682 0.78939 0.78016 1.19129 1.21364 1.22347 1.18724 0.86747 0.84577 0.76011 1.90734 1.15737 1.88004 1.53031 1.18807 0.97608 0.89359 1.09291 1.22455 0.90226 1.01479 0.94221 1.21396 1.02279 0.89870 1.00262 1.20923 0.90182 1.01051 0.93634 1.19257 0.97362 0.87430 1.05332 1.70704 1.01700 1.30954 1.20697 1.20500 0.88295 0.79129 0.97529 1.84793 1.40179 1.71603 1.28403 1.43564 1.16703 1.10091 1.51188 0.72995 1.18669 0.86802 0.96543 1.00924 0.88637 0.87133 0.90022 0.88672 0.93401 0.88282 0.90675 0.93869 0.97559 0.94262 0.79618 0.79730 0.82431 0.70390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 8.50 127.77 1.09 1.71 16 2 N -0.59 -15.36 2.76 -850.55 -2.35 -17.71 16 3 C 0.14 4.70 5.28 86.38 0.46 5.16 16 4 C 0.13 5.38 4.54 45.09 0.20 5.58 16 5 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 6 C -0.12 -4.27 7.19 31.24 0.22 -4.04 16 7 C 0.16 7.50 7.39 86.43 0.64 8.13 16 8 N -0.63 -32.41 3.58 -690.94 -2.47 -34.89 16 9 C -0.23 -13.06 10.51 84.03 0.88 -12.17 16 10 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 11 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 12 N -0.95 -58.00 11.56 21.65 0.25 -57.75 16 13 Si 0.97 46.30 29.55 68.60 2.03 48.33 16 14 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 15 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 16 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 17 C 0.55 16.36 7.45 86.69 0.65 17.00 16 18 O -0.59 -22.95 15.49 -3.99 -0.06 -23.01 16 19 C -0.14 -3.35 5.54 -20.08 -0.11 -3.46 16 20 C -0.06 -0.87 7.51 22.58 0.17 -0.70 16 21 C -0.12 -1.13 9.99 22.20 0.22 -0.91 16 22 C -0.04 -0.57 10.09 22.53 0.23 -0.35 16 23 C 0.02 0.56 7.22 39.36 0.28 0.84 16 24 N -0.51 -13.10 11.32 -306.47 -3.47 -16.57 16 25 C 0.45 10.70 9.40 179.73 1.69 12.39 16 26 O -0.44 -7.79 13.63 -85.61 -1.17 -8.95 16 27 N -0.59 -15.24 6.07 -301.79 -1.83 -17.07 16 28 H 0.43 11.30 8.10 -92.71 -0.75 10.54 16 29 C 0.08 2.14 6.87 39.17 0.27 2.41 16 30 H 0.10 0.81 7.29 -2.39 -0.02 0.79 16 31 H 0.11 1.15 4.83 -2.38 -0.01 1.14 16 32 H 0.08 1.17 6.40 -2.39 -0.02 1.16 16 33 H 0.10 3.13 8.03 -2.39 -0.02 3.11 16 34 H 0.05 1.91 7.64 -2.39 -0.02 1.89 16 35 H 0.10 2.99 6.80 -2.39 -0.02 2.98 16 36 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.04 2.25 7.45 -2.38 -0.02 2.23 16 38 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 40 H 0.19 1.37 4.34 -2.91 -0.01 1.36 16 41 H 0.19 0.15 8.06 -2.91 -0.02 0.13 16 42 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 43 H 0.43 2.59 9.06 -74.06 -0.67 1.92 16 Total: -1.00 -84.19 354.85 -2.05 -86.24 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -0.33 Total: 13.07 kcal Atomic # 6 Polarization: 20.96 SS G_CDS: 7.35 Total: 28.32 kcal Atomic # 7 Polarization: -134.11 SS G_CDS: -9.87 Total: -143.99 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -1.23 Total: -31.97 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -84.19 -2.05 -86.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085644903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.727 kcal (2) G-P(sol) polarization free energy of solvation -84.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds