Wall clock time and date at job start Tue Mar 31 2020 06:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 119.99983 * 2 1 4 4 C 1.52995 * 109.47420 * 81.59203 * 3 2 1 5 5 H 1.08998 * 113.04010 * 329.65152 * 4 3 2 6 6 C 1.53942 * 113.76987 * 197.89576 * 4 3 2 7 7 C 1.53945 * 86.29126 * 222.09096 * 6 4 3 8 8 N 1.47579 * 86.24095 * 23.55309 * 7 6 4 9 9 C 1.36940 * 134.49287 * 155.42570 * 8 7 6 10 10 H 1.08008 * 119.99761 * 180.29719 * 9 8 7 11 11 C 1.38802 * 120.00301 * 0.29389 * 9 8 7 12 12 N 1.31621 * 119.99863 * 11.90749 * 11 9 8 13 13 Si 1.86797 * 120.00229 * 191.90469 * 11 9 8 14 14 H 1.48501 * 109.47186 * 357.33094 * 13 11 9 15 15 H 1.48502 * 109.47090 * 117.33439 * 13 11 9 16 16 H 1.48504 * 109.47301 * 237.33216 * 13 11 9 17 17 C 1.34776 * 119.99688 * 180.02562 * 2 1 3 18 18 O 1.21517 * 120.00125 * 183.51168 * 17 2 1 19 19 C 1.48161 * 120.00198 * 3.50743 * 17 2 1 20 20 C 1.40179 * 121.00409 * 27.12353 * 19 17 2 21 21 C 1.38009 * 118.70982 * 179.76846 * 20 19 17 22 22 N 1.31664 * 121.43150 * 0.50323 * 21 20 19 23 23 C 1.32957 * 122.26145 * 359.75246 * 22 21 20 24 24 C 1.38878 * 121.00162 * 207.40694 * 19 17 2 25 25 C 1.50968 * 133.29212 * 359.97159 * 24 19 17 26 26 C 1.51440 * 103.92216 * 180.02562 * 25 24 19 27 27 O 1.21273 * 126.45180 * 180.02562 * 26 25 24 28 28 N 1.34352 * 107.08981 * 0.02562 * 26 25 24 29 29 H 1.09004 * 109.47135 * 83.95098 * 1 2 3 30 30 H 1.08997 * 109.47265 * 203.95273 * 1 2 3 31 31 H 1.09005 * 109.47044 * 323.95451 * 1 2 3 32 32 H 1.08991 * 109.47233 * 321.58833 * 3 2 1 33 33 H 1.09005 * 109.46990 * 201.59603 * 3 2 1 34 34 H 1.09001 * 113.73935 * 107.74960 * 6 4 3 35 35 H 1.08992 * 113.83973 * 336.45224 * 6 4 3 36 36 H 1.09006 * 113.76998 * 137.90730 * 7 6 4 37 37 H 1.09003 * 113.77380 * 269.19851 * 7 6 4 38 38 H 0.97000 * 120.00232 * 179.97438 * 12 11 9 39 39 H 1.07998 * 120.64137 * 359.97438 * 20 19 17 40 40 H 1.08006 * 119.28392 * 180.23117 * 21 20 19 41 41 H 1.08996 * 110.53377 * 298.63821 * 25 24 19 42 42 H 1.08999 * 110.53528 * 61.41538 * 25 24 19 43 43 H 0.97000 * 123.78625 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.2699 1.8159 1.4269 5 1 1.4113 1.5335 2.0362 6 6 2.6169 3.3139 1.5002 7 6 3.5422 2.9399 2.6723 8 7 3.5702 1.5839 2.0904 9 6 4.4484 0.5346 2.1439 10 1 4.2326 -0.3781 1.6082 11 6 5.6160 0.6438 2.8864 12 7 5.7732 1.6490 3.7215 13 14 6.9643 -0.6356 2.7007 14 1 6.5189 -1.6903 1.7549 15 1 8.1931 0.0127 2.1764 16 1 7.2527 -1.2465 4.0232 17 6 2.1388 -1.1672 -0.0005 18 8 3.3523 -1.1683 0.0639 19 6 1.4001 -2.4491 -0.0796 20 6 0.1438 -2.5216 -0.6974 21 6 -0.5004 -3.7410 -0.7486 22 7 0.0354 -4.8232 -0.2238 23 6 1.2211 -4.8080 0.3776 24 6 1.9287 -3.6139 0.4612 25 6 3.2136 -3.9269 1.1895 26 6 3.1141 -5.4092 1.4831 27 8 3.9378 -6.0861 2.0611 28 7 1.9415 -5.8331 0.9827 29 1 -0.3633 0.1083 -1.0220 30 1 -0.3633 -0.9391 0.4172 31 1 -0.3633 0.8310 0.6047 32 1 1.6818 1.9859 -0.6384 33 1 3.2067 1.1056 -0.3783 34 1 1.7766 3.9454 1.7887 35 1 3.1473 3.6865 0.6240 36 1 4.5066 3.4475 2.6499 37 1 3.0580 2.9895 3.6475 38 1 6.5890 1.7252 4.2407 39 1 -0.3095 -1.6409 -1.1278 40 1 -1.4670 -3.8082 -1.2257 41 1 4.0739 -3.7200 0.5531 42 1 3.2764 -3.3568 2.1164 43 1 1.6315 -6.7505 1.0380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085696739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:59 Heat of formation + Delta-G solvation = 71.503850 kcal Electronic energy + Delta-G solvation = -28951.601128 eV Core-core repulsion = 25000.589653 eV Total energy + Delta-G solvation = -3951.011475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.99209 -39.98803 -38.89669 -37.68143 -36.32501 -35.31145 -33.42486 -32.00328 -30.97065 -28.84157 -28.34254 -27.72296 -26.70444 -24.29468 -23.22417 -22.97387 -22.12435 -21.48962 -19.91936 -19.05879 -18.16861 -17.56104 -16.80184 -16.73121 -16.37087 -16.16863 -15.55956 -15.46233 -14.87210 -14.55086 -14.20790 -14.11838 -13.93138 -13.66622 -13.56867 -13.38213 -13.14928 -12.94040 -12.81073 -12.60634 -11.86190 -11.44949 -11.32558 -11.16387 -11.06554 -11.01993 -10.62163 -10.43012 -10.35796 -10.23081 -9.98824 -9.92133 -9.62958 -9.54476 -9.00386 -8.56227 -8.53459 -8.35013 -6.76324 -5.60237 -2.87185 0.53387 0.68723 2.17674 2.38414 2.90955 3.08601 3.52918 3.60294 3.60474 3.65497 3.74762 4.19338 4.28725 4.36124 4.56324 4.60119 4.79708 5.07803 5.12326 5.16591 5.24709 5.35652 5.44142 5.54643 5.57964 5.63944 5.64912 5.76746 5.82097 5.92165 5.98654 6.07004 6.24919 6.28608 6.38177 6.52000 6.60751 6.69895 6.84669 7.33522 7.42656 7.44412 7.53850 7.75077 7.77188 8.14259 8.46353 9.32741 9.92214 10.75761 11.58721 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.010830 B = 0.005253 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.856125 B = 5328.924628 C = 7568.974969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.603 5.603 3 C 0.113 3.887 4 C 0.126 3.874 5 H 0.042 0.958 6 C -0.161 4.161 7 C 0.160 3.840 8 N -0.597 5.597 9 C -0.213 4.213 10 H 0.110 0.890 11 C -0.015 4.015 12 N -0.928 5.928 13 Si 0.897 3.103 14 H -0.273 1.273 15 H -0.293 1.293 16 H -0.295 1.295 17 C 0.542 3.458 18 O -0.485 6.485 19 C -0.027 4.027 20 C -0.182 4.182 21 C 0.132 3.868 22 N -0.495 5.495 23 C 0.348 3.652 24 C -0.128 4.128 25 C -0.115 4.115 26 C 0.539 3.461 27 O -0.489 6.489 28 N -0.646 5.646 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.026 0.974 38 H 0.248 0.752 39 H 0.162 0.838 40 H 0.170 0.830 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.380 -5.776 -11.118 21.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.336 5.336 3 C -0.010 4.010 4 C 0.017 3.983 5 H 0.059 0.941 6 C -0.200 4.200 7 C 0.035 3.965 8 N -0.322 5.322 9 C -0.340 4.340 10 H 0.127 0.873 11 C -0.210 4.210 12 N -0.577 5.577 13 Si 0.728 3.272 14 H -0.198 1.198 15 H -0.220 1.220 16 H -0.223 1.223 17 C 0.328 3.672 18 O -0.358 6.358 19 C -0.038 4.038 20 C -0.203 4.203 21 C -0.025 4.025 22 N -0.210 5.210 23 C 0.116 3.884 24 C -0.135 4.135 25 C -0.154 4.154 26 C 0.326 3.674 27 O -0.361 6.361 28 N -0.293 5.293 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.044 0.956 38 H 0.058 0.942 39 H 0.179 0.821 40 H 0.187 0.813 41 H 0.158 0.842 42 H 0.155 0.845 43 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -16.259 -7.038 -10.658 20.675 hybrid contribution 0.745 -0.349 0.261 0.863 sum -15.513 -7.387 -10.397 20.083 Atomic orbital electron populations 1.22316 0.80496 1.03836 1.01235 1.47665 1.06476 1.06308 1.73168 1.22070 0.98162 0.82275 0.98451 1.22677 0.90910 0.92678 0.92014 0.94060 1.23814 0.99687 0.95160 1.01298 1.22093 0.96684 0.85735 0.92014 1.46358 1.16723 1.13411 1.55754 1.19799 0.96365 0.94174 1.23698 0.87317 1.24730 0.98808 0.98482 0.98938 1.69893 1.26694 1.32776 1.28309 0.86227 0.82616 0.81101 0.77230 1.19822 1.22028 1.22296 1.18147 0.87440 0.82976 0.78624 1.90857 1.12611 1.86287 1.46032 1.19692 0.94207 0.93275 0.96646 1.22841 0.94655 1.00726 1.02052 1.22419 0.99197 0.86184 0.94716 1.66571 1.09926 1.33023 1.11505 1.18228 0.89906 0.86842 0.93428 1.20426 0.98026 0.92849 1.02170 1.21166 0.97452 0.92752 1.04028 1.20646 0.79560 0.90611 0.76563 1.90843 1.42091 1.63237 1.39946 1.43535 1.19375 1.11490 1.54911 0.92293 0.90078 0.90943 0.91066 0.88118 0.93068 0.90707 0.91828 0.95650 0.94188 0.82111 0.81279 0.84215 0.84519 0.74416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.56 8.77 59.85 0.52 1.08 16 2 N -0.60 -8.41 2.88 -182.58 -0.53 -8.93 16 3 C 0.11 1.80 5.46 -4.05 -0.02 1.78 16 4 C 0.13 2.37 4.52 -66.74 -0.30 2.07 16 5 H 0.04 0.79 8.08 -51.93 -0.42 0.37 16 6 C -0.16 -2.83 7.85 -25.80 -0.20 -3.04 16 7 C 0.16 3.74 7.40 -2.98 -0.02 3.72 16 8 N -0.60 -14.96 3.54 -169.74 -0.60 -15.56 16 9 C -0.21 -6.02 10.40 -15.06 -0.16 -6.17 16 10 H 0.11 3.04 4.47 -52.48 -0.23 2.81 16 11 C -0.01 -0.43 5.48 -17.43 -0.10 -0.53 16 12 N -0.93 -28.52 11.66 55.49 0.65 -27.87 16 13 Si 0.90 23.64 29.57 -169.99 -5.03 18.61 16 14 H -0.27 -7.05 7.11 56.52 0.40 -6.64 16 15 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 16 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 17 C 0.54 8.77 7.50 -12.19 -0.09 8.68 16 18 O -0.48 -10.02 12.45 5.35 0.07 -9.96 16 19 C -0.03 -0.35 5.45 -104.86 -0.57 -0.92 16 20 C -0.18 -1.61 7.63 -38.94 -0.30 -1.91 16 21 C 0.13 1.09 11.14 -17.71 -0.20 0.89 16 22 N -0.49 -5.43 10.36 -12.37 -0.13 -5.56 16 23 C 0.35 4.27 8.27 -154.44 -1.28 2.99 16 24 C -0.13 -1.76 6.14 -103.95 -0.64 -2.40 16 25 C -0.11 -1.71 6.03 -28.54 -0.17 -1.88 16 26 C 0.54 7.74 8.71 -10.81 -0.09 7.64 16 27 O -0.49 -8.53 18.03 5.56 0.10 -8.43 16 28 N -0.65 -7.55 5.85 -11.21 -0.07 -7.61 16 29 H 0.06 0.35 7.24 -51.93 -0.38 -0.03 16 30 H 0.08 0.65 5.07 -51.93 -0.26 0.38 16 31 H 0.07 0.60 8.06 -51.93 -0.42 0.18 16 32 H 0.07 0.88 8.11 -51.93 -0.42 0.46 16 33 H 0.10 1.97 7.09 -51.93 -0.37 1.60 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 36 H 0.06 1.65 7.49 -51.93 -0.39 1.26 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.16 0.97 4.80 -52.49 -0.25 0.72 16 40 H 0.17 0.74 8.06 -52.48 -0.42 0.32 16 41 H 0.14 2.17 8.10 -51.93 -0.42 1.75 16 42 H 0.14 2.18 8.14 -51.93 -0.42 1.75 16 43 H 0.42 3.87 8.96 -40.82 -0.37 3.51 16 LS Contribution 352.79 15.07 5.32 5.32 Total: -1.00 -36.86 352.79 -9.01 -45.86 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.18 Total: 2.11 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: -3.61 Total: 12.01 kcal Atomic # 7 Polarization: -64.86 SS G_CDS: -0.67 Total: -65.53 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.17 Total: -18.39 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -5.03 Total: 18.61 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.86 -9.01 -45.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085696739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.368 kcal (2) G-P(sol) polarization free energy of solvation -36.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds