Wall clock time and date at job start Tue Mar 31 2020 06:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46496 * 119.99983 * 2 1 4 4 C 1.52995 * 109.47420 * 81.59203 * 3 2 1 5 5 H 1.08998 * 113.04010 * 329.65152 * 4 3 2 6 6 C 1.53942 * 113.76987 * 197.89576 * 4 3 2 7 7 C 1.53945 * 86.29126 * 222.09096 * 6 4 3 8 8 N 1.47579 * 86.24095 * 23.55309 * 7 6 4 9 9 C 1.36940 * 134.49287 * 155.42570 * 8 7 6 10 10 H 1.08008 * 119.99761 * 180.29719 * 9 8 7 11 11 C 1.38802 * 120.00301 * 0.29389 * 9 8 7 12 12 N 1.31621 * 119.99863 * 11.90749 * 11 9 8 13 13 Si 1.86797 * 120.00229 * 191.90469 * 11 9 8 14 14 H 1.48501 * 109.47186 * 357.33094 * 13 11 9 15 15 H 1.48502 * 109.47090 * 117.33439 * 13 11 9 16 16 H 1.48504 * 109.47301 * 237.33216 * 13 11 9 17 17 C 1.34776 * 119.99688 * 180.02562 * 2 1 3 18 18 O 1.21517 * 120.00125 * 183.51168 * 17 2 1 19 19 C 1.48161 * 120.00198 * 3.50743 * 17 2 1 20 20 C 1.40179 * 121.00409 * 27.12353 * 19 17 2 21 21 C 1.38009 * 118.70982 * 179.76846 * 20 19 17 22 22 N 1.31664 * 121.43150 * 0.50323 * 21 20 19 23 23 C 1.32957 * 122.26145 * 359.75246 * 22 21 20 24 24 C 1.38878 * 121.00162 * 207.40694 * 19 17 2 25 25 C 1.50968 * 133.29212 * 359.97159 * 24 19 17 26 26 C 1.51440 * 103.92216 * 180.02562 * 25 24 19 27 27 O 1.21273 * 126.45180 * 180.02562 * 26 25 24 28 28 N 1.34352 * 107.08981 * 0.02562 * 26 25 24 29 29 H 1.09004 * 109.47135 * 83.95098 * 1 2 3 30 30 H 1.08997 * 109.47265 * 203.95273 * 1 2 3 31 31 H 1.09005 * 109.47044 * 323.95451 * 1 2 3 32 32 H 1.08991 * 109.47233 * 321.58833 * 3 2 1 33 33 H 1.09005 * 109.46990 * 201.59603 * 3 2 1 34 34 H 1.09001 * 113.73935 * 107.74960 * 6 4 3 35 35 H 1.08992 * 113.83973 * 336.45224 * 6 4 3 36 36 H 1.09006 * 113.76998 * 137.90730 * 7 6 4 37 37 H 1.09003 * 113.77380 * 269.19851 * 7 6 4 38 38 H 0.97000 * 120.00232 * 179.97438 * 12 11 9 39 39 H 1.07998 * 120.64137 * 359.97438 * 20 19 17 40 40 H 1.08006 * 119.28392 * 180.23117 * 21 20 19 41 41 H 1.08996 * 110.53377 * 298.63821 * 25 24 19 42 42 H 1.08999 * 110.53528 * 61.41538 * 25 24 19 43 43 H 0.97000 * 123.78625 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.2699 1.8159 1.4269 5 1 1.4113 1.5335 2.0362 6 6 2.6169 3.3139 1.5002 7 6 3.5422 2.9399 2.6723 8 7 3.5702 1.5839 2.0904 9 6 4.4484 0.5346 2.1439 10 1 4.2326 -0.3781 1.6082 11 6 5.6160 0.6438 2.8864 12 7 5.7732 1.6490 3.7215 13 14 6.9643 -0.6356 2.7007 14 1 6.5189 -1.6903 1.7549 15 1 8.1931 0.0127 2.1764 16 1 7.2527 -1.2465 4.0232 17 6 2.1388 -1.1672 -0.0005 18 8 3.3523 -1.1683 0.0639 19 6 1.4001 -2.4491 -0.0796 20 6 0.1438 -2.5216 -0.6974 21 6 -0.5004 -3.7410 -0.7486 22 7 0.0354 -4.8232 -0.2238 23 6 1.2211 -4.8080 0.3776 24 6 1.9287 -3.6139 0.4612 25 6 3.2136 -3.9269 1.1895 26 6 3.1141 -5.4092 1.4831 27 8 3.9378 -6.0861 2.0611 28 7 1.9415 -5.8331 0.9827 29 1 -0.3633 0.1083 -1.0220 30 1 -0.3633 -0.9391 0.4172 31 1 -0.3633 0.8310 0.6047 32 1 1.6818 1.9859 -0.6384 33 1 3.2067 1.1056 -0.3783 34 1 1.7766 3.9454 1.7887 35 1 3.1473 3.6865 0.6240 36 1 4.5066 3.4475 2.6499 37 1 3.0580 2.9895 3.6475 38 1 6.5890 1.7252 4.2407 39 1 -0.3095 -1.6409 -1.1278 40 1 -1.4670 -3.8082 -1.2257 41 1 4.0739 -3.7200 0.5531 42 1 3.2764 -3.3568 2.1164 43 1 1.6315 -6.7505 1.0380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085696739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:58 Heat of formation + Delta-G solvation = 44.080922 kcal Electronic energy + Delta-G solvation = -28952.790275 eV Core-core repulsion = 25000.589653 eV Total energy + Delta-G solvation = -3952.200623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.98474 -41.15418 -40.05449 -39.26265 -37.40897 -36.49353 -34.43491 -34.09289 -31.99331 -29.92274 -29.74494 -29.42291 -27.67552 -25.43089 -25.19783 -24.04510 -23.31145 -22.59490 -21.03943 -20.78315 -19.20325 -18.64501 -18.58224 -17.87546 -17.48093 -17.28495 -16.84166 -16.61618 -16.30291 -15.93204 -15.62922 -15.35405 -15.33768 -14.93139 -14.78569 -14.65233 -14.34918 -14.05396 -13.99526 -13.65209 -13.33540 -13.02381 -12.90695 -12.74328 -12.60260 -12.49496 -12.24693 -12.09573 -11.72194 -11.62940 -11.52516 -11.38631 -11.10036 -10.81985 -10.69010 -10.34822 -9.56764 -9.42925 -8.80597 -7.83939 -5.07400 -0.39253 -0.20976 1.07534 1.36476 1.39532 1.42178 1.51250 1.79083 2.04115 2.51006 2.69241 2.72689 3.15693 3.32140 3.40513 3.45103 3.59878 3.61763 3.98806 4.08516 4.18683 4.26309 4.33669 4.41153 4.45808 4.47372 4.59992 4.66262 4.75419 4.82289 4.92815 4.97915 5.01447 5.10700 5.17861 5.21089 5.29795 5.42729 5.56084 5.61885 5.75091 5.90311 6.04853 6.42990 6.51180 6.79738 7.04856 7.30592 7.76305 8.67653 9.35699 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.010830 B = 0.005253 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.856125 B = 5328.924628 C = 7568.974969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.600 5.600 3 C 0.121 3.879 4 C 0.127 3.873 5 H 0.053 0.947 6 C -0.125 4.125 7 C 0.146 3.854 8 N -0.629 5.629 9 C -0.196 4.196 10 H 0.109 0.891 11 C -0.079 4.079 12 N -0.961 5.961 13 Si 0.944 3.056 14 H -0.272 1.272 15 H -0.295 1.295 16 H -0.301 1.301 17 C 0.533 3.467 18 O -0.547 6.547 19 C -0.043 4.043 20 C -0.154 4.154 21 C 0.147 3.853 22 N -0.496 5.496 23 C 0.339 3.661 24 C -0.153 4.153 25 C -0.116 4.116 26 C 0.545 3.455 27 O -0.527 6.527 28 N -0.630 5.630 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.059 0.941 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.027 0.973 37 H 0.012 0.988 38 H 0.239 0.761 39 H 0.201 0.799 40 H 0.223 0.777 41 H 0.122 0.878 42 H 0.115 0.885 43 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.603 -5.449 -14.019 27.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.332 5.332 3 C -0.002 4.002 4 C 0.021 3.979 5 H 0.070 0.930 6 C -0.164 4.164 7 C 0.021 3.979 8 N -0.355 5.355 9 C -0.325 4.325 10 H 0.126 0.874 11 C -0.270 4.270 12 N -0.614 5.614 13 Si 0.775 3.225 14 H -0.197 1.197 15 H -0.223 1.223 16 H -0.229 1.229 17 C 0.321 3.679 18 O -0.425 6.425 19 C -0.054 4.054 20 C -0.174 4.174 21 C -0.011 4.011 22 N -0.211 5.211 23 C 0.109 3.891 24 C -0.159 4.159 25 C -0.156 4.156 26 C 0.333 3.667 27 O -0.402 6.402 28 N -0.277 5.277 29 H 0.121 0.879 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.140 0.860 33 H 0.078 0.922 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.045 0.955 37 H 0.030 0.970 38 H 0.048 0.952 39 H 0.217 0.783 40 H 0.240 0.760 41 H 0.140 0.860 42 H 0.132 0.868 43 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -21.599 -6.716 -13.606 26.396 hybrid contribution 2.103 -0.376 1.047 2.379 sum -19.497 -7.092 -12.559 24.252 Atomic orbital electron populations 1.22752 0.76723 1.05010 1.04395 1.47796 1.08752 1.04858 1.71768 1.21828 0.97459 0.84203 0.96717 1.22948 0.88185 0.93581 0.93202 0.93003 1.23543 0.99238 0.95037 0.98553 1.22119 0.96427 0.85490 0.93887 1.46779 1.19150 1.13063 1.56475 1.20129 0.96524 0.94736 1.21095 0.87367 1.25310 1.00967 1.00421 1.00288 1.70030 1.26725 1.34601 1.30042 0.85461 0.80785 0.79536 0.76685 1.19671 1.22272 1.22869 1.18730 0.87057 0.84570 0.77549 1.90815 1.15400 1.87258 1.49051 1.19632 0.95936 0.91344 0.98487 1.23282 0.92190 1.02520 0.99456 1.23374 1.00298 0.84832 0.92571 1.66727 1.08809 1.34388 1.11176 1.18187 0.90538 0.86024 0.94349 1.20388 0.97581 0.94253 1.03722 1.20991 0.98420 0.93123 1.03072 1.20414 0.79942 0.90148 0.76169 1.90811 1.43597 1.63904 1.41906 1.43225 1.18345 1.12192 1.53964 0.87876 0.89125 0.89747 0.85984 0.92248 0.88620 0.89574 0.95492 0.97032 0.95162 0.78250 0.76031 0.86014 0.86765 0.72904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.59 8.77 127.77 1.12 1.71 16 2 N -0.60 -14.80 2.88 -849.85 -2.44 -17.25 16 3 C 0.12 3.52 5.46 86.38 0.47 3.99 16 4 C 0.13 4.52 4.52 45.04 0.20 4.72 16 5 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 6 C -0.13 -4.05 7.85 31.25 0.25 -3.81 16 7 C 0.15 6.94 7.40 86.48 0.64 7.58 16 8 N -0.63 -32.01 3.54 -690.93 -2.45 -34.46 16 9 C -0.20 -11.51 10.40 84.03 0.87 -10.64 16 10 H 0.11 6.36 4.47 -2.91 -0.01 6.35 16 11 C -0.08 -4.89 5.48 84.86 0.47 -4.43 16 12 N -0.96 -62.27 11.66 21.65 0.25 -62.02 16 13 Si 0.94 51.60 29.57 68.60 2.03 53.62 16 14 H -0.27 -14.57 7.11 99.48 0.71 -13.86 16 15 H -0.30 -16.01 7.11 99.48 0.71 -15.31 16 16 H -0.30 -16.47 7.11 99.48 0.71 -15.77 16 17 C 0.53 16.78 7.50 86.88 0.65 17.44 16 18 O -0.55 -23.58 12.45 -3.77 -0.05 -23.63 16 19 C -0.04 -1.03 5.45 -20.02 -0.11 -1.14 16 20 C -0.15 -1.91 7.63 22.69 0.17 -1.73 16 21 C 0.15 1.56 11.14 84.66 0.94 2.50 16 22 N -0.50 -8.97 10.36 -193.06 -2.00 -10.97 16 23 C 0.34 7.84 8.27 132.83 1.10 8.94 16 24 C -0.15 -4.18 6.14 -19.43 -0.12 -4.30 16 25 C -0.12 -3.77 6.03 29.42 0.18 -3.59 16 26 C 0.55 16.59 8.71 87.96 0.77 17.36 16 27 O -0.53 -19.51 18.03 -3.01 -0.05 -19.57 16 28 N -0.63 -14.63 5.85 -308.02 -1.80 -16.44 16 29 H 0.10 0.36 7.24 -2.38 -0.02 0.35 16 30 H 0.09 0.89 5.07 -2.39 -0.01 0.88 16 31 H 0.08 0.85 8.06 -2.38 -0.02 0.83 16 32 H 0.12 2.34 8.11 -2.39 -0.02 2.32 16 33 H 0.06 2.29 7.09 -2.38 -0.02 2.27 16 34 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.09 2.63 8.10 -2.39 -0.02 2.61 16 36 H 0.03 1.45 7.49 -2.38 -0.02 1.43 16 37 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.24 15.25 8.31 -92.71 -0.77 14.48 16 39 H 0.20 0.88 4.80 -2.91 -0.01 0.86 16 40 H 0.22 0.08 8.06 -2.91 -0.02 0.06 16 41 H 0.12 4.28 8.10 -2.39 -0.02 4.26 16 42 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 43 H 0.43 7.69 8.96 -92.71 -0.83 6.86 16 Total: -1.00 -90.10 352.79 1.33 -88.76 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 0.25 Total: 7.35 kcal Atomic # 6 Polarization: 27.00 SS G_CDS: 7.60 Total: 34.60 kcal Atomic # 7 Polarization: -132.69 SS G_CDS: -8.44 Total: -141.14 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -0.10 Total: -43.20 kcal Atomic # 14 Polarization: 51.60 SS G_CDS: 2.03 Total: 53.62 kcal Total: -90.10 1.33 -88.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085696739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.842 kcal (2) G-P(sol) polarization free energy of solvation -90.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds