Wall clock time and date at job start Tue Mar 31 2020 06:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46501 * 119.99710 * 2 1 4 4 C 1.52991 * 109.47127 * 84.34737 * 3 2 1 5 5 H 1.09004 * 112.96750 * 294.33838 * 4 3 2 6 6 C 1.53941 * 113.77326 * 66.01997 * 4 3 2 7 7 C 1.53949 * 86.29024 * 137.91028 * 6 4 3 8 8 N 1.47584 * 113.76803 * 162.66634 * 4 3 2 9 9 C 1.36929 * 134.49263 * 41.06297 * 8 4 3 10 10 H 1.08004 * 120.00253 * 4.74675 * 9 8 4 11 11 C 1.38813 * 120.00044 * 184.73998 * 9 8 4 12 12 N 1.31617 * 119.99909 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 120.00322 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.46927 * 59.99981 * 13 11 9 15 15 H 1.48497 * 109.47330 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46720 * 300.00089 * 13 11 9 17 17 C 1.34778 * 119.99927 * 179.97438 * 2 1 3 18 18 O 1.21506 * 119.99704 * 183.64103 * 17 2 1 19 19 C 1.48160 * 119.99809 * 3.64296 * 17 2 1 20 20 C 1.40172 * 121.00459 * 21.54013 * 19 17 2 21 21 C 1.38013 * 118.70793 * 179.79403 * 20 19 17 22 22 N 1.31664 * 121.43412 * 0.46339 * 21 20 19 23 23 C 1.32953 * 122.25689 * 359.77974 * 22 21 20 24 24 C 1.38885 * 120.99969 * 201.82305 * 19 17 2 25 25 C 1.50970 * 133.28838 * 359.95910 * 24 19 17 26 26 C 1.51440 * 103.91641 * 180.02562 * 25 24 19 27 27 O 1.21276 * 126.45094 * 180.02562 * 26 25 24 28 28 N 1.34344 * 107.09439 * 0.02562 * 26 25 24 29 29 H 1.09000 * 109.46645 * 84.16270 * 1 2 3 30 30 H 1.08996 * 109.47067 * 324.15891 * 1 2 3 31 31 H 1.08999 * 109.47129 * 204.15575 * 1 2 3 32 32 H 1.09004 * 109.46559 * 204.34125 * 3 2 1 33 33 H 1.08996 * 109.47007 * 324.33909 * 3 2 1 34 34 H 1.08998 * 113.74443 * 252.25470 * 6 4 3 35 35 H 1.09000 * 113.74222 * 23.45656 * 6 4 3 36 36 H 1.08994 * 113.77024 * 90.69560 * 7 6 4 37 37 H 1.09008 * 113.76810 * 221.98511 * 7 6 4 38 38 H 0.97001 * 120.00316 * 179.97438 * 12 11 9 39 39 H 1.07998 * 120.64744 * 359.97438 * 20 19 17 40 40 H 1.08001 * 119.28790 * 180.24417 * 21 20 19 41 41 H 1.09003 * 110.53643 * 298.64528 * 25 24 19 42 42 H 1.08993 * 110.53681 * 61.42862 * 25 24 19 43 43 H 0.97008 * 123.78923 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3295 1.7815 1.4354 5 1 1.3713 2.0480 1.8816 6 6 3.2062 0.8909 2.3343 7 6 3.8018 2.2011 2.8808 8 7 3.3720 2.8122 1.6054 9 6 3.7772 3.8969 0.8746 10 1 3.2347 4.1822 -0.0147 11 6 4.8852 4.6300 1.2767 12 7 5.5466 4.2822 2.3601 13 14 5.4378 6.1103 0.2801 14 1 4.3426 7.1120 0.2331 15 1 6.6359 6.7154 0.9152 16 1 5.7743 5.6796 -1.1007 17 6 2.1390 -1.1672 0.0005 18 8 3.3522 -1.1682 0.0673 19 6 1.4004 -2.4490 -0.0804 20 6 0.0979 -2.5005 -0.5959 21 6 -0.5446 -3.7206 -0.6533 22 7 0.0361 -4.8231 -0.2282 23 6 1.2673 -4.8285 0.2737 24 6 1.9755 -3.6349 0.3575 25 6 3.3171 -3.9735 0.9614 26 6 3.2468 -5.4690 1.1894 27 8 4.1175 -6.1673 1.6639 28 7 2.0384 -5.8766 0.7670 29 1 -0.3632 0.1045 -1.0224 30 1 -0.3633 0.8330 0.6017 31 1 -0.3633 -0.9377 0.4205 32 1 3.1901 1.1152 -0.4236 33 1 1.6561 2.0008 -0.5991 34 1 2.6417 0.3233 3.0741 35 1 3.9199 0.2787 1.7832 36 1 3.2770 2.5924 3.7523 37 1 4.8832 2.1701 3.0140 38 1 6.3211 4.7942 2.6410 39 1 -0.3923 -1.6034 -0.9440 40 1 -1.5469 -3.7717 -1.0524 41 1 4.1214 -3.7297 0.2674 42 1 3.4542 -3.4488 1.9069 43 1 1.7371 -6.7980 0.8019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085696740.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:02 Heat of formation + Delta-G solvation = 74.527833 kcal Electronic energy + Delta-G solvation = -28233.290987 eV Core-core repulsion = 24282.410642 eV Total energy + Delta-G solvation = -3950.880346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.17034 -40.21348 -39.06888 -37.66513 -36.52136 -35.47937 -33.59921 -32.14811 -31.14669 -28.97718 -28.44530 -27.81598 -26.90708 -24.41542 -23.26913 -23.12550 -22.22430 -21.66607 -20.10028 -18.98531 -18.34446 -17.74345 -16.93710 -16.71345 -16.54765 -16.32765 -15.73586 -15.56026 -15.15784 -14.64808 -14.40556 -14.26644 -14.03155 -13.93425 -13.56981 -13.52404 -13.32309 -13.11694 -12.90613 -12.33403 -12.26231 -11.76966 -11.42012 -11.26170 -11.03632 -10.87280 -10.67099 -10.61838 -10.50334 -10.31358 -10.07047 -9.82937 -9.70844 -9.63948 -9.51911 -8.75116 -8.70918 -8.46917 -6.84067 -5.72406 -3.06413 0.35951 0.52429 1.99690 2.22997 2.73903 2.89030 3.40471 3.44194 3.44433 3.46226 3.56680 3.99863 4.11269 4.21671 4.40655 4.47435 4.66747 4.95601 4.98813 5.14538 5.17594 5.19269 5.23701 5.44418 5.47131 5.52234 5.54535 5.60886 5.83451 5.88617 5.91857 6.08284 6.09699 6.34991 6.35702 6.49128 6.61935 6.73063 6.80333 7.29421 7.29617 7.34354 7.53875 7.58285 7.65612 8.02593 8.11819 9.06457 9.74144 10.64232 11.43506 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.018386 B = 0.003019 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.508755 B = 9272.922693 C =10233.017872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.596 5.596 3 C 0.116 3.884 4 C 0.128 3.872 5 H 0.041 0.959 6 C -0.157 4.157 7 C 0.155 3.845 8 N -0.599 5.599 9 C -0.226 4.226 10 H 0.077 0.923 11 C -0.005 4.005 12 N -0.918 5.918 13 Si 0.910 3.090 14 H -0.286 1.286 15 H -0.290 1.290 16 H -0.284 1.284 17 C 0.550 3.450 18 O -0.510 6.510 19 C -0.029 4.029 20 C -0.188 4.188 21 C 0.135 3.865 22 N -0.493 5.493 23 C 0.347 3.653 24 C -0.131 4.131 25 C -0.110 4.110 26 C 0.538 3.462 27 O -0.491 6.491 28 N -0.646 5.646 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.088 0.912 36 H 0.021 0.979 37 H 0.077 0.923 38 H 0.254 0.746 39 H 0.171 0.829 40 H 0.172 0.828 41 H 0.140 0.860 42 H 0.134 0.866 43 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.592 -16.928 -5.669 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.329 5.329 3 C -0.007 4.007 4 C 0.020 3.980 5 H 0.058 0.942 6 C -0.195 4.195 7 C 0.030 3.970 8 N -0.325 5.325 9 C -0.353 4.353 10 H 0.095 0.905 11 C -0.202 4.202 12 N -0.564 5.564 13 Si 0.740 3.260 14 H -0.213 1.213 15 H -0.216 1.216 16 H -0.211 1.211 17 C 0.337 3.663 18 O -0.385 6.385 19 C -0.041 4.041 20 C -0.209 4.209 21 C -0.023 4.023 22 N -0.208 5.208 23 C 0.115 3.885 24 C -0.137 4.137 25 C -0.150 4.150 26 C 0.325 3.675 27 O -0.362 6.362 28 N -0.293 5.293 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.106 0.894 36 H 0.039 0.961 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.188 0.812 40 H 0.189 0.811 41 H 0.157 0.843 42 H 0.152 0.848 43 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -14.525 -17.708 -5.434 23.539 hybrid contribution 0.166 1.331 -0.423 1.406 sum -14.360 -16.377 -5.857 22.555 Atomic orbital electron populations 1.22570 0.80307 1.04221 1.01701 1.47686 1.06754 1.06313 1.72138 1.21939 0.97784 0.81828 0.99163 1.22506 0.93185 0.89514 0.92789 0.94180 1.23814 0.99473 0.97601 0.98656 1.22308 1.00214 0.86547 0.87934 1.45933 1.35648 1.29362 1.21606 1.18912 1.08391 1.02894 1.05128 0.90534 1.24775 0.97851 0.99652 0.97931 1.69813 1.20959 1.41108 1.24560 0.86241 0.77939 0.82430 0.79359 1.21286 1.21580 1.21062 1.18089 0.87227 0.82999 0.78010 1.90822 1.12940 1.86586 1.48190 1.19634 0.94069 0.92911 0.97443 1.23207 0.94402 1.01279 1.02018 1.22483 0.99535 0.85908 0.94353 1.66580 1.08637 1.32840 1.12769 1.18233 0.89426 0.86596 0.94212 1.20410 0.97607 0.92640 1.03046 1.21115 0.96416 0.92302 1.05125 1.20641 0.80079 0.90993 0.75771 1.90850 1.40169 1.62457 1.42773 1.43539 1.15397 1.10453 1.59902 0.91848 0.90619 0.89335 0.88557 0.91077 0.94137 0.89366 0.96116 0.90486 0.93624 0.81167 0.81131 0.84269 0.84802 0.74305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.43 8.73 59.85 0.52 0.95 16 2 N -0.60 -7.57 2.80 -182.58 -0.51 -8.08 16 3 C 0.12 1.92 5.40 -4.05 -0.02 1.90 16 4 C 0.13 2.51 4.57 -66.87 -0.31 2.21 16 5 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 6 C -0.16 -3.13 7.25 -25.79 -0.19 -3.32 16 7 C 0.15 3.75 7.64 -2.84 -0.02 3.73 16 8 N -0.60 -15.13 3.58 -169.71 -0.61 -15.74 16 9 C -0.23 -6.21 10.51 -15.06 -0.16 -6.36 16 10 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 11 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 12 N -0.92 -27.41 11.32 55.49 0.63 -26.78 16 13 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 C 0.55 7.54 7.21 -12.18 -0.09 7.45 16 18 O -0.51 -8.84 13.66 5.36 0.07 -8.77 16 19 C -0.03 -0.31 5.59 -104.86 -0.59 -0.90 16 20 C -0.19 -1.36 7.69 -38.94 -0.30 -1.66 16 21 C 0.13 0.90 11.14 -17.71 -0.20 0.71 16 22 N -0.49 -4.54 10.36 -12.37 -0.13 -4.67 16 23 C 0.35 3.47 8.27 -154.43 -1.28 2.19 16 24 C -0.13 -1.42 6.14 -103.95 -0.64 -2.05 16 25 C -0.11 -1.20 5.90 -28.54 -0.17 -1.37 16 26 C 0.54 6.01 8.71 -10.82 -0.09 5.91 16 27 O -0.49 -6.98 18.03 5.56 0.10 -6.88 16 28 N -0.65 -5.96 5.85 -11.21 -0.07 -6.03 16 29 H 0.06 0.35 7.33 -51.93 -0.38 -0.03 16 30 H 0.08 0.60 8.11 -51.93 -0.42 0.17 16 31 H 0.09 0.54 4.78 -51.93 -0.25 0.30 16 32 H 0.10 1.91 7.31 -51.93 -0.38 1.53 16 33 H 0.07 1.10 8.11 -51.93 -0.42 0.67 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 1.88 6.46 -51.93 -0.34 1.54 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.08 2.08 6.97 -51.92 -0.36 1.72 16 38 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.17 0.81 4.27 -52.49 -0.22 0.58 16 40 H 0.17 0.53 8.06 -52.49 -0.42 0.10 16 41 H 0.14 1.55 8.09 -51.93 -0.42 1.13 16 42 H 0.13 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.42 3.00 8.96 -40.82 -0.37 2.64 16 LS Contribution 353.90 15.07 5.33 5.33 Total: -1.00 -35.18 353.90 -9.04 -44.22 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -5.22 Total: 1.22 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: -3.62 Total: 9.14 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: -0.69 Total: -61.29 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: 0.17 Total: -15.65 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.18 -9.04 -44.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085696740.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.746 kcal (2) G-P(sol) polarization free energy of solvation -35.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds