Wall clock time and date at job start Tue Mar 31 2020 06:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46501 * 119.99710 * 2 1 4 4 C 1.52991 * 109.47127 * 84.34737 * 3 2 1 5 5 H 1.09004 * 112.96750 * 294.33838 * 4 3 2 6 6 C 1.53941 * 113.77326 * 66.01997 * 4 3 2 7 7 C 1.53949 * 86.29024 * 137.91028 * 6 4 3 8 8 N 1.47584 * 113.76803 * 162.66634 * 4 3 2 9 9 C 1.36929 * 134.49263 * 41.06297 * 8 4 3 10 10 H 1.08004 * 120.00253 * 4.74675 * 9 8 4 11 11 C 1.38813 * 120.00044 * 184.73998 * 9 8 4 12 12 N 1.31617 * 119.99909 * 0.02562 * 11 9 8 13 13 Si 1.86807 * 120.00322 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.46927 * 59.99981 * 13 11 9 15 15 H 1.48497 * 109.47330 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46720 * 300.00089 * 13 11 9 17 17 C 1.34778 * 119.99927 * 179.97438 * 2 1 3 18 18 O 1.21506 * 119.99704 * 183.64103 * 17 2 1 19 19 C 1.48160 * 119.99809 * 3.64296 * 17 2 1 20 20 C 1.40172 * 121.00459 * 21.54013 * 19 17 2 21 21 C 1.38013 * 118.70793 * 179.79403 * 20 19 17 22 22 N 1.31664 * 121.43412 * 0.46339 * 21 20 19 23 23 C 1.32953 * 122.25689 * 359.77974 * 22 21 20 24 24 C 1.38885 * 120.99969 * 201.82305 * 19 17 2 25 25 C 1.50970 * 133.28838 * 359.95910 * 24 19 17 26 26 C 1.51440 * 103.91641 * 180.02562 * 25 24 19 27 27 O 1.21276 * 126.45094 * 180.02562 * 26 25 24 28 28 N 1.34344 * 107.09439 * 0.02562 * 26 25 24 29 29 H 1.09000 * 109.46645 * 84.16270 * 1 2 3 30 30 H 1.08996 * 109.47067 * 324.15891 * 1 2 3 31 31 H 1.08999 * 109.47129 * 204.15575 * 1 2 3 32 32 H 1.09004 * 109.46559 * 204.34125 * 3 2 1 33 33 H 1.08996 * 109.47007 * 324.33909 * 3 2 1 34 34 H 1.08998 * 113.74443 * 252.25470 * 6 4 3 35 35 H 1.09000 * 113.74222 * 23.45656 * 6 4 3 36 36 H 1.08994 * 113.77024 * 90.69560 * 7 6 4 37 37 H 1.09008 * 113.76810 * 221.98511 * 7 6 4 38 38 H 0.97001 * 120.00316 * 179.97438 * 12 11 9 39 39 H 1.07998 * 120.64744 * 359.97438 * 20 19 17 40 40 H 1.08001 * 119.28790 * 180.24417 * 21 20 19 41 41 H 1.09003 * 110.53643 * 298.64528 * 25 24 19 42 42 H 1.08993 * 110.53681 * 61.42862 * 25 24 19 43 43 H 0.97008 * 123.78923 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3295 1.7815 1.4354 5 1 1.3713 2.0480 1.8816 6 6 3.2062 0.8909 2.3343 7 6 3.8018 2.2011 2.8808 8 7 3.3720 2.8122 1.6054 9 6 3.7772 3.8969 0.8746 10 1 3.2347 4.1822 -0.0147 11 6 4.8852 4.6300 1.2767 12 7 5.5466 4.2822 2.3601 13 14 5.4378 6.1103 0.2801 14 1 4.3426 7.1120 0.2331 15 1 6.6359 6.7154 0.9152 16 1 5.7743 5.6796 -1.1007 17 6 2.1390 -1.1672 0.0005 18 8 3.3522 -1.1682 0.0673 19 6 1.4004 -2.4490 -0.0804 20 6 0.0979 -2.5005 -0.5959 21 6 -0.5446 -3.7206 -0.6533 22 7 0.0361 -4.8231 -0.2282 23 6 1.2673 -4.8285 0.2737 24 6 1.9755 -3.6349 0.3575 25 6 3.3171 -3.9735 0.9614 26 6 3.2468 -5.4690 1.1894 27 8 4.1175 -6.1673 1.6639 28 7 2.0384 -5.8766 0.7670 29 1 -0.3632 0.1045 -1.0224 30 1 -0.3633 0.8330 0.6017 31 1 -0.3633 -0.9377 0.4205 32 1 3.1901 1.1152 -0.4236 33 1 1.6561 2.0008 -0.5991 34 1 2.6417 0.3233 3.0741 35 1 3.9199 0.2787 1.7832 36 1 3.2770 2.5924 3.7523 37 1 4.8832 2.1701 3.0140 38 1 6.3211 4.7942 2.6410 39 1 -0.3923 -1.6034 -0.9440 40 1 -1.5469 -3.7717 -1.0524 41 1 4.1214 -3.7297 0.2674 42 1 3.4542 -3.4488 1.9069 43 1 1.7371 -6.7980 0.8019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085696740.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:01 Heat of formation + Delta-G solvation = 49.622956 kcal Electronic energy + Delta-G solvation = -28234.370944 eV Core-core repulsion = 24282.410642 eV Total energy + Delta-G solvation = -3951.960302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.95464 -41.24206 -40.05778 -39.25445 -37.39470 -36.53723 -34.48850 -34.10523 -32.00065 -29.88752 -29.81097 -29.50291 -27.77458 -25.50583 -25.16690 -24.09395 -23.34859 -22.53154 -21.17148 -20.68418 -19.22492 -18.71976 -18.48187 -17.76451 -17.44267 -17.29922 -16.99766 -16.63486 -16.34193 -15.92578 -15.80915 -15.34579 -15.27866 -14.92018 -14.78580 -14.43665 -14.16774 -14.05134 -13.98262 -13.87270 -13.50830 -13.34533 -12.88498 -12.58462 -12.50811 -12.40592 -12.30761 -12.01326 -11.77637 -11.59060 -11.55067 -11.30321 -11.25720 -10.85077 -10.78786 -10.40658 -9.65552 -9.39302 -8.85588 -7.85011 -5.19591 -0.40017 -0.17453 1.14821 1.45817 1.48247 1.50121 1.55640 1.76460 1.91684 2.50844 2.71329 2.78331 3.14722 3.32387 3.37372 3.48437 3.60608 3.66574 3.93986 4.09227 4.19963 4.29605 4.30626 4.36883 4.38010 4.50585 4.55374 4.69487 4.72222 4.81752 4.87312 4.92633 4.99291 5.05301 5.12695 5.22001 5.28400 5.35413 5.48546 5.57072 5.64635 5.79233 5.98374 6.38043 6.56850 6.84083 6.93740 7.10052 7.65757 8.62027 9.31382 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.018386 B = 0.003019 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.508755 B = 9272.922693 C =10233.017872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.593 5.593 3 C 0.131 3.869 4 C 0.136 3.864 5 H 0.064 0.936 6 C -0.133 4.133 7 C 0.147 3.853 8 N -0.628 5.628 9 C -0.227 4.227 10 H 0.090 0.910 11 C -0.072 4.072 12 N -0.957 5.957 13 Si 0.977 3.023 14 H -0.274 1.274 15 H -0.300 1.300 16 H -0.276 1.276 17 C 0.546 3.454 18 O -0.559 6.559 19 C -0.042 4.042 20 C -0.166 4.166 21 C 0.146 3.854 22 N -0.499 5.499 23 C 0.338 3.662 24 C -0.148 4.148 25 C -0.110 4.110 26 C 0.544 3.456 27 O -0.528 6.528 28 N -0.634 5.634 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.019 0.981 37 H 0.037 0.963 38 H 0.245 0.755 39 H 0.204 0.796 40 H 0.218 0.782 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.978 -17.273 -7.605 27.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.324 5.324 3 C 0.006 3.994 4 C 0.030 3.970 5 H 0.082 0.918 6 C -0.171 4.171 7 C 0.022 3.978 8 N -0.355 5.355 9 C -0.355 4.355 10 H 0.108 0.892 11 C -0.265 4.265 12 N -0.606 5.606 13 Si 0.805 3.195 14 H -0.199 1.199 15 H -0.226 1.226 16 H -0.202 1.202 17 C 0.334 3.666 18 O -0.438 6.438 19 C -0.054 4.054 20 C -0.186 4.186 21 C -0.012 4.012 22 N -0.214 5.214 23 C 0.107 3.893 24 C -0.154 4.154 25 C -0.149 4.149 26 C 0.332 3.668 27 O -0.403 6.403 28 N -0.281 5.281 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.128 0.872 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.037 0.963 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.221 0.779 40 H 0.235 0.765 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -19.019 -18.087 -7.403 27.270 hybrid contribution 1.364 1.410 0.145 1.967 sum -17.655 -16.677 -7.257 25.348 Atomic orbital electron populations 1.22999 0.76734 1.05726 1.04301 1.47678 1.08751 1.04447 1.71545 1.21444 0.96992 0.84076 0.96846 1.22680 0.92577 0.87062 0.94723 0.91848 1.23517 0.99043 0.95801 0.98773 1.22238 0.98107 0.89299 0.88190 1.46276 1.37476 1.29858 1.21865 1.19392 1.07992 1.02869 1.05258 0.89247 1.25657 0.98548 1.02960 0.99332 1.70035 1.21496 1.42455 1.26612 0.85171 0.77198 0.79198 0.77897 1.19940 1.22605 1.20248 1.18601 0.86886 0.84151 0.76958 1.90808 1.15286 1.87345 1.50345 1.19482 0.95497 0.90975 0.99401 1.23585 0.92442 1.02885 0.99734 1.23318 1.00814 0.84713 0.92337 1.66704 1.07915 1.34173 1.12590 1.18230 0.89920 0.86077 0.95055 1.20413 0.97403 0.93451 1.04139 1.21017 0.96970 0.92172 1.04784 1.20552 0.80200 0.90860 0.75213 1.90824 1.41528 1.63209 1.44728 1.43334 1.14671 1.11045 1.59061 0.88376 0.90074 0.87187 0.92470 0.89179 0.91243 0.91146 0.96337 0.94430 0.94576 0.77935 0.76516 0.85307 0.85312 0.73126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 8.73 127.77 1.12 1.56 16 2 N -0.59 -13.43 2.80 -849.84 -2.38 -15.81 16 3 C 0.13 4.15 5.40 86.38 0.47 4.62 16 4 C 0.14 5.17 4.57 45.09 0.21 5.37 16 5 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 6 C -0.13 -5.33 7.25 31.25 0.23 -5.10 16 7 C 0.15 7.37 7.64 86.44 0.66 8.03 16 8 N -0.63 -32.05 3.58 -690.85 -2.48 -34.52 16 9 C -0.23 -12.55 10.51 84.04 0.88 -11.67 16 10 H 0.09 4.58 7.83 -2.91 -0.02 4.55 16 11 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 12 N -0.96 -59.50 11.32 21.65 0.25 -59.26 16 13 Si 0.98 46.08 29.55 68.60 2.03 48.11 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 15 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 C 0.55 14.27 7.21 86.88 0.63 14.90 16 18 O -0.56 -19.97 13.66 -3.74 -0.05 -20.02 16 19 C -0.04 -0.80 5.59 -20.02 -0.11 -0.91 16 20 C -0.17 -1.56 7.69 22.69 0.17 -1.39 16 21 C 0.15 1.17 11.14 84.66 0.94 2.11 16 22 N -0.50 -7.37 10.36 -193.06 -2.00 -9.37 16 23 C 0.34 6.14 8.27 132.83 1.10 7.24 16 24 C -0.15 -3.07 6.14 -19.43 -0.12 -3.19 16 25 C -0.11 -2.52 5.90 29.42 0.17 -2.35 16 26 C 0.54 12.57 8.71 87.96 0.77 13.33 16 27 O -0.53 -15.75 18.03 -3.02 -0.05 -15.80 16 28 N -0.63 -11.34 5.85 -308.02 -1.80 -13.15 16 29 H 0.10 0.42 7.33 -2.39 -0.02 0.40 16 30 H 0.08 0.84 8.11 -2.39 -0.02 0.82 16 31 H 0.11 0.70 4.78 -2.39 -0.01 0.69 16 32 H 0.06 2.30 7.31 -2.38 -0.02 2.28 16 33 H 0.09 2.52 8.11 -2.39 -0.02 2.51 16 34 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.07 3.11 6.46 -2.39 -0.02 3.10 16 36 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.04 2.16 6.97 -2.38 -0.02 2.14 16 38 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 39 H 0.20 0.54 4.27 -2.91 -0.01 0.53 16 40 H 0.22 -0.26 8.06 -2.91 -0.02 -0.28 16 41 H 0.13 3.17 8.09 -2.39 -0.02 3.15 16 42 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 43 H 0.43 5.80 8.96 -92.70 -0.83 4.97 16 Total: -1.00 -81.96 353.90 1.33 -80.63 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.25 Total: 10.35 kcal Atomic # 6 Polarization: 21.27 SS G_CDS: 7.58 Total: 28.85 kcal Atomic # 7 Polarization: -123.70 SS G_CDS: -8.41 Total: -132.11 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -0.11 Total: -35.83 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -81.96 1.33 -80.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085696740.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.253 kcal (2) G-P(sol) polarization free energy of solvation -81.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds