Wall clock time and date at job start Tue Mar 31 2020 06:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00018 * 2 1 4 4 H 1.48501 * 109.47499 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47360 * 300.00052 * 3 2 1 6 6 H 1.48500 * 109.47140 * 60.00119 * 3 2 1 7 7 C 1.38811 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99772 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99646 * 180.02562 * 9 7 2 11 11 H 1.08996 * 110.02225 * 33.60561 * 10 9 7 12 12 C 1.54270 * 110.02952 * 272.16323 * 10 9 7 13 13 C 1.54893 * 104.19511 * 264.32526 * 12 10 9 14 14 C 1.54886 * 102.74956 * 322.06101 * 13 12 10 15 15 H 1.09004 * 110.59874 * 279.20418 * 14 13 12 16 16 C 1.52999 * 110.48687 * 156.62055 * 14 13 12 17 17 N 1.46505 * 109.46946 * 70.22031 * 16 14 13 18 18 C 1.34777 * 119.99634 * 179.97438 * 17 16 14 19 19 O 1.21620 * 120.00147 * 0.02562 * 18 17 16 20 20 C 1.47316 * 120.00098 * 179.97438 * 18 17 16 21 21 C 1.39006 * 120.90146 * 0.02562 * 20 18 17 22 22 C 1.39717 * 119.28987 * 179.69607 * 21 20 18 23 23 C 1.35262 * 121.08064 * 0.30424 * 22 21 20 24 24 N 1.35713 * 121.57441 * 359.97223 * 23 22 21 25 25 N 1.40204 * 134.09290 * 180.02562 * 24 23 22 26 26 N 1.29015 * 106.96450 * 179.97438 * 25 24 23 27 27 N 1.28598 * 110.78414 * 0.02562 * 26 25 24 28 28 C 1.32042 * 110.21419 * 359.97438 * 27 26 25 29 29 C 1.53879 * 110.02924 * 155.00096 * 10 9 7 30 30 H 0.96996 * 119.99741 * 359.97438 * 1 2 3 31 31 H 0.96993 * 120.00038 * 359.97438 * 9 7 2 32 32 H 1.08997 * 110.49102 * 23.00446 * 12 10 9 33 33 H 1.08998 * 110.48447 * 145.51881 * 12 10 9 34 34 H 1.09003 * 110.75526 * 203.74192 * 13 12 10 35 35 H 1.09000 * 110.75316 * 80.37924 * 13 12 10 36 36 H 1.09002 * 109.47236 * 310.22549 * 16 14 13 37 37 H 1.08996 * 109.47469 * 190.22244 * 16 14 13 38 38 H 0.96997 * 120.00226 * 0.02562 * 17 16 14 39 39 H 1.08002 * 120.35777 * 359.97438 * 21 20 18 40 40 H 1.08003 * 119.45822 * 180.27350 * 22 21 20 41 41 H 1.08008 * 119.21179 * 179.97438 * 23 22 21 42 42 H 1.08995 * 110.03663 * 359.97438 * 29 10 9 43 43 H 1.09003 * 110.02753 * 238.56155 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 1 2.9830 -3.5537 0.5660 12 6 2.3710 -4.0863 -1.4499 13 6 1.2229 -5.0605 -1.8134 14 6 1.0002 -5.8351 -0.4908 15 1 1.7396 -6.6285 -0.3818 16 6 -0.4153 -6.4136 -0.4408 17 7 -0.5315 -7.5045 -1.4118 18 6 -1.6974 -8.1674 -1.5442 19 8 -2.6532 -7.8598 -0.8579 20 6 -1.8145 -9.2640 -2.5209 21 6 -0.7344 -9.6309 -3.3152 22 6 -0.8810 -10.6801 -4.2261 23 6 -2.0563 -11.3379 -4.3503 24 7 -3.1376 -11.0090 -3.5990 25 7 -4.4487 -11.4976 -3.5098 26 7 -5.0515 -10.7960 -2.6104 27 7 -4.2608 -9.9100 -2.1170 28 6 -3.0717 -9.9927 -2.6850 29 6 1.1866 -4.7686 0.6082 30 1 -0.4849 0.8400 0.0004 31 1 0.3557 -2.3880 -0.0016 32 1 2.3628 -3.2223 -2.1143 33 1 3.3343 -4.5940 -1.4976 34 1 1.5290 -5.7377 -2.6109 35 1 0.3248 -4.5110 -2.0953 36 1 -1.1358 -5.6326 -0.6839 37 1 -0.6168 -6.7951 0.5601 38 1 0.2309 -7.7501 -1.9589 39 1 0.2094 -9.1135 -3.2260 40 1 -0.0422 -10.9704 -4.8415 41 1 -2.1362 -12.1443 -5.0645 42 1 0.2188 -4.3643 0.9045 43 1 1.6889 -5.2057 1.4712 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086705790.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:18 Heat of formation + Delta-G solvation = 124.788648 kcal Electronic energy + Delta-G solvation = -26919.421765 eV Core-core repulsion = 23003.013643 eV Total energy + Delta-G solvation = -3916.408122 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.77076 -40.21523 -38.89306 -38.12618 -35.09453 -34.46162 -33.32690 -32.48056 -31.35979 -30.51726 -28.99834 -27.42772 -25.97410 -24.82050 -24.48093 -23.39055 -23.09099 -21.24644 -20.07102 -19.37688 -19.02234 -18.07955 -17.92944 -17.30119 -17.11918 -16.42666 -16.02845 -15.53405 -15.14363 -14.82001 -14.47618 -14.24029 -13.83432 -13.67918 -13.47198 -13.31322 -13.24486 -12.89513 -12.85808 -12.67420 -12.31401 -11.82250 -11.44790 -11.34907 -11.25063 -10.88304 -10.77790 -10.76990 -10.63416 -10.53872 -10.33174 -10.29048 -10.15247 -9.92055 -9.64170 -9.32267 -9.09468 -8.89751 -6.94528 -5.76812 -3.05379 -0.58053 -0.02399 1.13857 1.71256 2.05127 2.67292 2.98008 3.05310 3.42423 3.44948 3.47965 3.50473 3.75144 3.90487 4.22876 4.48626 4.58194 4.74070 4.77526 4.88522 4.90529 4.96514 5.03364 5.05149 5.27775 5.49925 5.52923 5.67838 5.69151 5.75451 5.85356 5.95967 6.00877 6.05859 6.15100 6.25891 6.29985 6.42526 6.62127 6.70235 6.88235 7.06626 7.18250 7.70861 7.91085 7.97600 8.42336 9.53046 10.12445 10.46035 11.45751 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.024185 B = 0.002077 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.474844 B =13477.258954 C =13961.357768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.174 3.826 11 H 0.048 0.952 12 C -0.146 4.146 13 C -0.113 4.113 14 C -0.103 4.103 15 H 0.075 0.925 16 C 0.127 3.873 17 N -0.717 5.717 18 C 0.555 3.445 19 O -0.497 6.497 20 C -0.094 4.094 21 C -0.020 4.020 22 C -0.144 4.144 23 C 0.128 3.872 24 N -0.310 5.310 25 N -0.106 5.106 26 N -0.007 5.007 27 N -0.288 5.288 28 C 0.272 3.728 29 C -0.122 4.122 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.397 0.603 39 H 0.164 0.836 40 H 0.176 0.824 41 H 0.185 0.815 42 H 0.074 0.926 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.808 -26.468 -10.893 28.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.064 3.936 11 H 0.066 0.934 12 C -0.187 4.187 13 C -0.151 4.151 14 C -0.122 4.122 15 H 0.094 0.906 16 C 0.004 3.996 17 N -0.370 5.370 18 C 0.339 3.661 19 O -0.370 6.370 20 C -0.103 4.103 21 C -0.046 4.046 22 C -0.168 4.168 23 C 0.001 3.999 24 N -0.090 5.090 25 N -0.089 5.089 26 N 0.000 5.000 27 N -0.144 5.144 28 C 0.013 3.987 29 C -0.161 4.161 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.232 0.768 39 H 0.182 0.818 40 H 0.193 0.807 41 H 0.202 0.798 42 H 0.092 0.908 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.590 -26.499 -10.072 28.393 hybrid contribution 1.427 0.838 -0.752 1.818 sum 3.017 -25.662 -10.824 28.014 Atomic orbital electron populations 1.69669 1.05077 1.25545 1.57693 1.24748 0.95495 0.97680 1.03106 0.86153 0.78754 0.84307 0.77181 1.20606 1.21943 1.21903 1.19289 0.91007 0.84205 1.42527 0.91184 1.42556 1.05684 0.99710 1.88252 1.20798 0.94137 0.86103 0.92582 0.93378 1.23122 0.95941 0.98651 1.00985 1.22516 1.00110 0.97432 0.95030 1.22249 0.94422 0.97859 0.97689 0.90628 1.21639 0.97941 0.88234 0.91781 1.45862 1.12798 1.36202 1.42105 1.17410 0.83866 0.81806 0.83015 1.90957 1.36883 1.65231 1.43979 1.20381 0.89018 0.99313 1.01604 1.22037 0.98050 0.93880 0.90655 1.21030 0.97343 0.97043 1.01341 1.21817 0.83466 1.00149 0.94449 1.49039 1.11176 1.22971 1.25861 1.82828 0.84324 1.21101 1.20659 1.78086 1.21738 0.98986 1.01203 1.75336 0.97737 1.17909 1.23419 1.23630 0.95788 0.89781 0.89498 1.22474 1.01601 0.95376 0.96623 0.93548 0.78235 0.90958 0.93331 0.93047 0.91176 0.90426 0.91087 0.76801 0.81845 0.80665 0.79805 0.90774 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.90 22.13 29.55 -169.99 -5.02 17.11 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.24 -6.45 9.96 -15.06 -0.15 -6.60 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.72 -17.29 5.08 -52.33 -0.27 -17.56 16 10 C 0.17 3.19 3.56 -66.81 -0.24 2.95 16 11 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 12 C -0.15 -2.29 6.54 -25.07 -0.16 -2.46 16 13 C -0.11 -1.41 6.19 -24.74 -0.15 -1.57 16 14 C -0.10 -1.15 2.89 -88.96 -0.26 -1.41 16 15 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 16 C 0.13 1.45 4.96 -4.04 -0.02 1.43 16 17 N -0.72 -6.43 5.40 -61.42 -0.33 -6.76 16 18 C 0.56 6.50 7.77 -12.57 -0.10 6.41 16 19 O -0.50 -8.37 16.28 5.26 0.09 -8.28 16 20 C -0.09 -0.84 6.06 -102.71 -0.62 -1.46 16 21 C -0.02 -0.07 9.63 -38.74 -0.37 -0.44 16 22 C -0.14 -0.20 9.92 -40.09 -0.40 -0.59 16 23 C 0.13 0.47 11.15 -16.90 -0.19 0.29 16 24 N -0.31 -2.89 3.94 -10.99 -0.04 -2.93 16 25 N -0.11 -1.29 13.99 60.35 0.84 -0.45 16 26 N -0.01 -0.11 13.36 60.35 0.81 0.70 16 27 N -0.29 -4.46 11.75 32.20 0.38 -4.08 16 28 C 0.27 3.24 7.85 -154.52 -1.21 2.03 16 29 C -0.12 -1.78 6.14 -25.61 -0.16 -1.94 16 30 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.38 9.89 7.52 -40.82 -0.31 9.59 16 32 H 0.07 1.35 8.04 -51.93 -0.42 0.93 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 1.03 7.97 -51.93 -0.41 0.62 16 36 H 0.08 1.07 8.02 -51.93 -0.42 0.66 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.40 2.06 6.54 -40.82 -0.27 1.79 16 39 H 0.16 -0.01 6.49 -52.49 -0.34 -0.35 16 40 H 0.18 -0.49 8.06 -52.48 -0.42 -0.91 16 41 H 0.18 0.01 8.06 -52.48 -0.42 -0.41 16 42 H 0.07 1.22 7.31 -51.93 -0.38 0.84 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 364.77 15.07 5.50 5.50 Total: -1.00 -37.63 364.77 -6.92 -44.55 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.47 Total: 3.28 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -4.13 Total: -3.88 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: 2.11 Total: -58.28 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.09 Total: -8.28 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.63 -6.92 -44.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086705790.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.341 kcal (2) G-P(sol) polarization free energy of solvation -37.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds