Wall clock time and date at job start Tue Mar 31 2020 06:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00018 * 2 1 4 4 H 1.48501 * 109.47499 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47360 * 300.00052 * 3 2 1 6 6 H 1.48500 * 109.47140 * 60.00119 * 3 2 1 7 7 C 1.38811 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99772 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99646 * 180.02562 * 9 7 2 11 11 H 1.08996 * 110.02225 * 33.60561 * 10 9 7 12 12 C 1.54270 * 110.02952 * 272.16323 * 10 9 7 13 13 C 1.54893 * 104.19511 * 264.32526 * 12 10 9 14 14 C 1.54886 * 102.74956 * 322.06101 * 13 12 10 15 15 H 1.09004 * 110.59874 * 279.20418 * 14 13 12 16 16 C 1.52999 * 110.48687 * 156.62055 * 14 13 12 17 17 N 1.46505 * 109.46946 * 70.22031 * 16 14 13 18 18 C 1.34777 * 119.99634 * 179.97438 * 17 16 14 19 19 O 1.21620 * 120.00147 * 0.02562 * 18 17 16 20 20 C 1.47316 * 120.00098 * 179.97438 * 18 17 16 21 21 C 1.39006 * 120.90146 * 0.02562 * 20 18 17 22 22 C 1.39717 * 119.28987 * 179.69607 * 21 20 18 23 23 C 1.35262 * 121.08064 * 0.30424 * 22 21 20 24 24 N 1.35713 * 121.57441 * 359.97223 * 23 22 21 25 25 N 1.40204 * 134.09290 * 180.02562 * 24 23 22 26 26 N 1.29015 * 106.96450 * 179.97438 * 25 24 23 27 27 N 1.28598 * 110.78414 * 0.02562 * 26 25 24 28 28 C 1.32042 * 110.21419 * 359.97438 * 27 26 25 29 29 C 1.53879 * 110.02924 * 155.00096 * 10 9 7 30 30 H 0.96996 * 119.99741 * 359.97438 * 1 2 3 31 31 H 0.96993 * 120.00038 * 359.97438 * 9 7 2 32 32 H 1.08997 * 110.49102 * 23.00446 * 12 10 9 33 33 H 1.08998 * 110.48447 * 145.51881 * 12 10 9 34 34 H 1.09003 * 110.75526 * 203.74192 * 13 12 10 35 35 H 1.09000 * 110.75316 * 80.37924 * 13 12 10 36 36 H 1.09002 * 109.47236 * 310.22549 * 16 14 13 37 37 H 1.08996 * 109.47469 * 190.22244 * 16 14 13 38 38 H 0.96997 * 120.00226 * 0.02562 * 17 16 14 39 39 H 1.08002 * 120.35777 * 359.97438 * 21 20 18 40 40 H 1.08003 * 119.45822 * 180.27350 * 22 21 20 41 41 H 1.08008 * 119.21179 * 179.97438 * 23 22 21 42 42 H 1.08995 * 110.03663 * 359.97438 * 29 10 9 43 43 H 1.09003 * 110.02753 * 238.56155 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 1 2.9830 -3.5537 0.5660 12 6 2.3710 -4.0863 -1.4499 13 6 1.2229 -5.0605 -1.8134 14 6 1.0002 -5.8351 -0.4908 15 1 1.7396 -6.6285 -0.3818 16 6 -0.4153 -6.4136 -0.4408 17 7 -0.5315 -7.5045 -1.4118 18 6 -1.6974 -8.1674 -1.5442 19 8 -2.6532 -7.8598 -0.8579 20 6 -1.8145 -9.2640 -2.5209 21 6 -0.7344 -9.6309 -3.3152 22 6 -0.8810 -10.6801 -4.2261 23 6 -2.0563 -11.3379 -4.3503 24 7 -3.1376 -11.0090 -3.5990 25 7 -4.4487 -11.4976 -3.5098 26 7 -5.0515 -10.7960 -2.6104 27 7 -4.2608 -9.9100 -2.1170 28 6 -3.0717 -9.9927 -2.6850 29 6 1.1866 -4.7686 0.6082 30 1 -0.4849 0.8400 0.0004 31 1 0.3557 -2.3880 -0.0016 32 1 2.3628 -3.2223 -2.1143 33 1 3.3343 -4.5940 -1.4976 34 1 1.5290 -5.7377 -2.6109 35 1 0.3248 -4.5110 -2.0953 36 1 -1.1358 -5.6326 -0.6839 37 1 -0.6168 -6.7951 0.5601 38 1 0.2309 -7.7501 -1.9589 39 1 0.2094 -9.1135 -3.2260 40 1 -0.0422 -10.9704 -4.8415 41 1 -2.1362 -12.1443 -5.0645 42 1 0.2188 -4.3643 0.9045 43 1 1.6889 -5.2057 1.4712 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086705790.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:17 Heat of formation + Delta-G solvation = 95.024948 kcal Electronic energy + Delta-G solvation = -26920.712416 eV Core-core repulsion = 23003.013643 eV Total energy + Delta-G solvation = -3917.698773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.49952 -41.04779 -39.62900 -39.20840 -36.32512 -35.27661 -34.80702 -33.13266 -32.57874 -31.70540 -30.12459 -28.81063 -26.73793 -25.68370 -25.36728 -24.97797 -24.04760 -22.04660 -21.07277 -20.67914 -19.83976 -19.11686 -18.63181 -18.59572 -18.05046 -17.16066 -16.66186 -16.63040 -16.41235 -16.04750 -15.74631 -15.21065 -15.05388 -14.77093 -14.52773 -14.18488 -14.16040 -13.92254 -13.67481 -13.53233 -13.25520 -13.10404 -12.96631 -12.56368 -12.45187 -12.31271 -12.17338 -12.09112 -11.90482 -11.66126 -11.57766 -11.44926 -11.33866 -11.30659 -11.11741 -10.87712 -10.19871 -9.71212 -8.93155 -7.91455 -5.18484 -1.06298 -0.58644 0.58641 0.95003 1.46760 1.47397 1.48002 1.57887 1.92623 2.28698 2.49296 2.58301 2.84278 3.38611 3.41787 3.59025 3.71334 3.74704 3.86039 3.91445 4.00666 4.21382 4.26125 4.36238 4.49966 4.57519 4.61089 4.67822 4.75369 4.75638 4.86723 4.89296 4.98309 5.02475 5.14971 5.22069 5.30228 5.32492 5.37795 5.50101 5.58197 5.64466 5.74749 6.32521 6.48854 7.16148 7.17218 7.36761 8.18710 8.37911 9.32544 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.024185 B = 0.002077 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.474844 B =13477.258954 C =13961.357768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.083 4.083 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.296 1.296 6 H -0.298 1.298 7 C -0.230 4.230 8 H 0.077 0.923 9 N -0.736 5.736 10 C 0.159 3.841 11 H 0.043 0.957 12 C -0.139 4.139 13 C -0.107 4.107 14 C -0.081 4.081 15 H 0.121 0.879 16 C 0.134 3.866 17 N -0.694 5.694 18 C 0.554 3.446 19 O -0.566 6.566 20 C -0.138 4.138 21 C 0.027 3.973 22 C -0.113 4.113 23 C 0.117 3.883 24 N -0.306 5.306 25 N -0.122 5.122 26 N -0.041 5.041 27 N -0.350 5.350 28 C 0.251 3.749 29 C -0.120 4.120 30 H 0.248 0.752 31 H 0.369 0.631 32 H 0.035 0.965 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.037 0.963 36 H 0.042 0.958 37 H 0.063 0.937 38 H 0.420 0.580 39 H 0.213 0.787 40 H 0.241 0.759 41 H 0.225 0.775 42 H 0.045 0.955 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.932 -29.403 -13.666 33.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.275 4.275 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.224 1.224 6 H -0.225 1.225 7 C -0.363 4.363 8 H 0.095 0.905 9 N -0.376 5.376 10 C 0.051 3.949 11 H 0.061 0.939 12 C -0.179 4.179 13 C -0.144 4.144 14 C -0.099 4.099 15 H 0.139 0.861 16 C 0.010 3.990 17 N -0.348 5.348 18 C 0.341 3.659 19 O -0.445 6.445 20 C -0.147 4.147 21 C 0.002 3.998 22 C -0.135 4.135 23 C -0.009 4.009 24 N -0.086 5.086 25 N -0.106 5.106 26 N -0.034 5.034 27 N -0.208 5.208 28 C -0.006 4.006 29 C -0.159 4.159 30 H 0.057 0.943 31 H 0.201 0.799 32 H 0.054 0.946 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.260 0.740 39 H 0.230 0.770 40 H 0.257 0.743 41 H 0.242 0.758 42 H 0.064 0.936 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.823 -29.499 -12.887 32.906 hybrid contribution 0.108 1.617 -0.022 1.620 sum 6.930 -27.882 -12.909 31.497 Atomic orbital electron populations 1.69837 1.06683 1.25691 1.60287 1.25550 0.96301 1.01105 1.04526 0.85120 0.78411 0.80163 0.76399 1.18714 1.22400 1.22509 1.19693 0.91437 0.85379 1.39752 0.90502 1.42811 1.05236 1.01172 1.88395 1.21190 0.93952 0.84903 0.94866 0.93872 1.22946 0.98928 0.98417 0.97601 1.22485 0.97508 0.97359 0.97055 1.22121 0.94943 0.97596 0.95267 0.86089 1.21345 0.97432 0.88101 0.92128 1.45519 1.12966 1.34799 1.41522 1.17892 0.83354 0.82047 0.82645 1.90927 1.39264 1.67421 1.46873 1.20188 0.89898 1.00357 1.04307 1.22782 0.97390 0.92487 0.87112 1.21883 0.97648 0.94291 0.99673 1.23038 0.82516 1.01329 0.93985 1.49149 1.11324 1.22179 1.25972 1.82593 0.85975 1.21438 1.20580 1.77991 1.22988 0.99908 1.02510 1.75140 1.00012 1.19637 1.26020 1.23897 0.95791 0.90902 0.90007 1.22403 0.99571 0.95399 0.98543 0.94329 0.79941 0.94559 0.89856 0.88126 0.94420 0.93956 0.91834 0.73996 0.77019 0.74316 0.75822 0.93642 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.68 13.06 21.65 0.28 -60.40 16 2 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 3 Si 0.97 46.34 29.55 68.60 2.03 48.36 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 7 C -0.23 -12.61 9.96 84.03 0.84 -11.78 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.74 -36.24 5.08 -319.49 -1.62 -37.86 16 10 C 0.16 5.68 3.56 45.72 0.16 5.84 16 11 H 0.04 1.57 8.08 -2.39 -0.02 1.55 16 12 C -0.14 -4.00 6.54 31.67 0.21 -3.79 16 13 C -0.11 -2.31 6.19 31.89 0.20 -2.11 16 14 C -0.08 -1.53 2.89 -9.72 -0.03 -1.56 16 15 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 16 C 0.13 2.94 4.96 86.38 0.43 3.37 16 17 N -0.69 -10.59 5.40 -466.47 -2.52 -13.11 16 18 C 0.55 12.82 7.77 86.63 0.67 13.49 16 19 O -0.57 -20.65 16.28 -4.09 -0.07 -20.72 16 20 C -0.14 -2.18 6.06 -18.63 -0.11 -2.30 16 21 C 0.03 0.01 9.63 22.81 0.22 0.23 16 22 C -0.11 0.55 9.92 21.94 0.22 0.77 16 23 C 0.12 0.30 11.15 83.41 0.93 1.23 16 24 N -0.31 -5.36 3.94 -188.67 -0.74 -6.10 16 25 N -0.12 -3.11 13.99 37.02 0.52 -2.59 16 26 N -0.04 -1.33 13.36 37.02 0.49 -0.84 16 27 N -0.35 -11.95 11.75 -52.05 -0.61 -12.56 16 28 C 0.25 6.10 7.85 135.76 1.07 7.17 16 29 C -0.12 -3.39 6.14 31.32 0.19 -3.20 16 30 H 0.25 15.07 8.31 -92.71 -0.77 14.29 16 31 H 0.37 20.04 7.52 -92.71 -0.70 19.34 16 32 H 0.04 1.31 8.04 -2.39 -0.02 1.29 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.04 1.08 7.97 -2.39 -0.02 1.06 16 36 H 0.04 1.25 8.02 -2.39 -0.02 1.23 16 37 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.42 1.88 6.54 -92.71 -0.61 1.27 16 39 H 0.21 -1.99 6.49 -2.91 -0.02 -2.01 16 40 H 0.24 -3.97 8.06 -2.91 -0.02 -3.99 16 41 H 0.23 -1.32 8.06 -2.91 -0.02 -1.34 16 42 H 0.04 1.55 7.31 -2.39 -0.02 1.54 16 43 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -97.79 364.77 2.98 -94.81 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -0.23 Total: 7.99 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 5.46 Total: 3.02 kcal Atomic # 7 Polarization: -129.26 SS G_CDS: -4.20 Total: -133.46 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.07 Total: -20.72 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Total: -97.79 2.98 -94.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086705790.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.830 kcal (2) G-P(sol) polarization free energy of solvation -97.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds