Wall clock time and date at job start Tue Mar 31 2020 06:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99748 * 2 1 4 4 H 1.48501 * 109.46831 * 269.99964 * 3 2 1 5 5 H 1.48500 * 109.46925 * 29.99756 * 3 2 1 6 6 H 1.48497 * 109.46891 * 149.99986 * 3 2 1 7 7 C 1.38813 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00234 * 0.02562 * 7 2 1 9 9 N 1.36932 * 119.99695 * 179.97438 * 7 2 1 10 10 C 1.46510 * 119.99859 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.66920 * 36.78010 * 10 9 7 12 12 C 1.54886 * 110.75542 * 273.54796 * 10 9 7 13 13 C 1.54261 * 104.19530 * 203.55802 * 12 10 9 14 14 C 1.53877 * 106.59993 * 23.60964 * 13 12 10 15 15 H 1.08992 * 110.03144 * 240.66921 * 14 13 12 16 16 C 1.53006 * 110.03136 * 119.28514 * 14 13 12 17 17 N 1.46499 * 109.46897 * 66.45358 * 16 14 13 18 18 C 1.34780 * 119.99856 * 179.97438 * 17 16 14 19 19 O 1.21585 * 119.99779 * 0.02562 * 18 17 16 20 20 C 1.47689 * 120.00353 * 180.02562 * 18 17 16 21 21 C 1.41596 * 120.02972 * 359.97438 * 20 18 17 22 22 C 1.35780 * 119.55179 * 180.02562 * 21 20 18 23 23 C 1.40868 * 119.38830 * 359.96634 * 22 21 20 24 24 N 1.32486 * 133.41724 * 180.02562 * 23 22 21 25 25 N 1.28535 * 110.23690 * 179.97438 * 24 23 22 26 26 N 1.28975 * 110.84988 * 359.97438 * 25 24 23 27 27 N 1.36924 * 119.92945 * 0.02562 * 23 22 21 28 28 C 1.35505 * 120.84829 * 0.02562 * 27 23 22 29 29 C 1.54264 * 106.59844 * 0.02562 * 14 13 12 30 30 H 0.96994 * 120.00060 * 359.97438 * 1 2 3 31 31 H 0.97003 * 120.00734 * 0.02562 * 9 7 2 32 32 H 1.09003 * 110.48638 * 84.87661 * 12 10 9 33 33 H 1.09005 * 110.59875 * 322.29322 * 12 10 9 34 34 H 1.09007 * 110.03418 * 264.32725 * 13 12 10 35 35 H 1.09002 * 110.03606 * 142.89682 * 13 12 10 36 36 H 1.08997 * 109.46817 * 306.45344 * 16 14 13 37 37 H 1.08997 * 109.46816 * 186.45927 * 16 14 13 38 38 H 0.96997 * 120.00013 * 0.02562 * 17 16 14 39 39 H 1.08000 * 120.22587 * 0.02562 * 21 20 18 40 40 H 1.08000 * 120.30968 * 179.97438 * 22 21 20 41 41 H 1.07994 * 119.82459 * 179.72292 * 28 27 23 42 42 H 1.08997 * 110.48874 * 95.06361 * 29 14 13 43 43 H 1.08994 * 110.48758 * 217.71247 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3796 -1.2020 0.0000 10 6 4.1123 -2.4708 0.0000 11 1 3.5970 -3.2125 -0.6102 12 6 4.3097 -2.9906 1.4456 13 6 5.5414 -3.9144 1.3505 14 6 6.3408 -3.4558 0.1183 15 1 6.4111 -4.2684 -0.6047 16 6 7.7415 -3.0069 0.5396 17 7 8.4949 -4.1604 1.0375 18 6 9.7627 -4.0029 1.4667 19 8 10.2810 -2.9034 1.4410 20 6 10.5225 -5.1659 1.9681 21 6 9.9194 -6.4466 1.9987 22 6 10.6266 -7.5090 2.4622 23 6 11.9504 -7.3183 2.9044 24 7 12.8722 -8.1327 3.3967 25 7 13.9481 -7.4799 3.6586 26 7 13.8106 -6.2316 3.3649 27 7 12.5109 -6.0697 2.8643 28 6 11.8078 -5.0070 2.4035 29 6 5.5672 -2.2689 -0.4921 30 1 -0.4850 0.8400 0.0004 31 1 3.8647 -0.3620 -0.0004 32 1 3.4349 -3.5534 1.7714 33 1 4.5053 -2.1629 2.1274 34 1 5.2231 -4.9494 1.2251 35 1 6.1514 -3.8172 2.2486 36 1 7.6613 -2.2578 1.3273 37 1 8.2589 -2.5778 -0.3185 38 1 8.0814 -5.0377 1.0575 39 1 8.9037 -6.5776 1.6558 40 1 10.1785 -8.4912 2.4914 41 1 12.2647 -4.0286 2.3834 42 1 5.9670 -1.3237 -0.1249 43 1 5.6098 -2.3051 -1.5806 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086757143.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:07 Heat of formation + Delta-G solvation = 122.093793 kcal Electronic energy + Delta-G solvation = -26577.527074 eV Core-core repulsion = 22661.002094 eV Total energy + Delta-G solvation = -3916.524980 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.04005 -40.80810 -39.00130 -38.24661 -35.49272 -34.76862 -33.65370 -32.80112 -31.25349 -31.10713 -29.39203 -27.85436 -26.26908 -25.11026 -24.31005 -23.45526 -22.81426 -21.74035 -20.24865 -19.65016 -19.40155 -18.18615 -18.08640 -17.60353 -17.51910 -16.45164 -16.16149 -15.74352 -15.45418 -15.11797 -14.90370 -14.31718 -14.29181 -14.05567 -13.72852 -13.27992 -13.13270 -13.09900 -12.80427 -12.61848 -12.48767 -12.34328 -12.31792 -11.68074 -11.42745 -11.16907 -10.93566 -10.86285 -10.83386 -10.69601 -10.64273 -10.48556 -10.33443 -9.98655 -9.64075 -9.58656 -9.33072 -8.96302 -7.31849 -5.82391 -3.18284 -0.56542 -0.25593 0.94045 1.32373 2.00344 2.49725 2.69694 2.95469 3.33426 3.36190 3.39806 3.41948 3.64398 3.80391 4.12661 4.17753 4.53193 4.54076 4.60645 4.67555 4.75961 4.85419 4.89710 4.98347 5.21908 5.25694 5.33660 5.42082 5.51185 5.56189 5.58313 5.65444 5.73104 5.81999 5.90433 6.06055 6.09475 6.15598 6.30918 6.48467 6.69793 6.87397 6.90294 7.54172 7.72258 7.93883 8.37043 9.15324 9.87991 10.07195 11.35809 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.034475 B = 0.001882 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.994036 B =14876.689021 C =15360.944013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.182 3.818 11 H 0.062 0.938 12 C -0.144 4.144 13 C -0.122 4.122 14 C -0.101 4.101 15 H 0.078 0.922 16 C 0.125 3.875 17 N -0.712 5.712 18 C 0.569 3.431 19 O -0.526 6.526 20 C -0.151 4.151 21 C -0.035 4.035 22 C -0.090 4.090 23 C 0.251 3.749 24 N -0.321 5.321 25 N -0.002 5.002 26 N -0.100 5.100 27 N -0.307 5.307 28 C 0.181 3.819 29 C -0.125 4.125 30 H 0.260 0.740 31 H 0.361 0.639 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.402 0.598 39 H 0.163 0.837 40 H 0.176 0.824 41 H 0.197 0.803 42 H 0.068 0.932 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.828 -15.416 2.757 26.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.387 5.387 10 C 0.072 3.928 11 H 0.080 0.920 12 C -0.184 4.184 13 C -0.161 4.161 14 C -0.121 4.121 15 H 0.096 0.904 16 C 0.002 3.998 17 N -0.364 5.364 18 C 0.353 3.647 19 O -0.403 6.403 20 C -0.160 4.160 21 C -0.061 4.061 22 C -0.113 4.113 23 C -0.004 4.004 24 N -0.180 5.180 25 N 0.005 4.995 26 N -0.083 5.083 27 N -0.085 5.085 28 C 0.051 3.949 29 C -0.164 4.164 30 H 0.070 0.930 31 H 0.194 0.806 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.238 0.762 39 H 0.181 0.819 40 H 0.193 0.807 41 H 0.214 0.786 42 H 0.087 0.913 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 23.439 -15.070 3.348 28.066 hybrid contribution -0.425 1.207 -0.225 1.299 sum 23.014 -13.862 3.123 27.047 Atomic orbital electron populations 1.69697 1.05121 1.25876 1.57368 1.24687 0.95240 0.97247 1.01958 0.86559 0.79214 0.84993 0.77797 1.21061 1.21754 1.20312 1.19064 0.80591 0.94684 1.43170 0.89212 1.42732 1.04033 1.01948 1.89945 1.21134 0.89461 0.89064 0.93153 0.92004 1.23036 0.95961 0.98494 1.00925 1.22244 0.97565 0.99669 0.96586 1.21979 0.92657 0.99285 0.98154 0.90366 1.21709 0.91097 0.87308 0.99652 1.45896 1.12922 1.13236 1.64327 1.17464 0.81926 0.87044 0.78280 1.90877 1.69017 1.25582 1.54831 1.19729 0.93965 0.95945 1.06353 1.21471 1.00829 0.90090 0.93703 1.20356 0.88277 1.02325 1.00355 1.23167 0.97197 0.82107 0.97899 1.75221 0.96581 1.24749 1.21421 1.77920 1.15823 0.97385 1.08367 1.82928 0.91543 1.12933 1.20917 1.48862 1.11932 1.08830 1.38924 1.21761 0.90529 0.91987 0.90647 1.22613 0.96613 0.96992 1.00216 0.93031 0.80575 0.92038 0.91887 0.92054 0.92251 0.90553 0.90862 0.76242 0.81943 0.80686 0.78576 0.91346 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.59 13.97 55.49 0.78 -27.81 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 3 Si 0.88 21.47 27.74 -169.99 -4.71 16.75 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.30 6.52 56.52 0.37 -5.94 16 7 C -0.25 -6.61 10.46 -15.06 -0.16 -6.77 16 8 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 9 N -0.75 -16.43 5.06 -51.48 -0.26 -16.69 16 10 C 0.18 3.05 3.53 -65.92 -0.23 2.82 16 11 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 12 C -0.14 -2.11 6.51 -25.08 -0.16 -2.27 16 13 C -0.12 -1.18 6.13 -25.61 -0.16 -1.33 16 14 C -0.10 -0.89 2.98 -89.50 -0.27 -1.16 16 15 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 16 C 0.12 1.03 4.70 -4.04 -0.02 1.01 16 17 N -0.71 -4.19 5.25 -61.30 -0.32 -4.51 16 18 C 0.57 4.21 7.77 -12.40 -0.10 4.12 16 19 O -0.53 -5.97 16.28 5.29 0.09 -5.88 16 20 C -0.15 -0.78 5.84 -105.34 -0.62 -1.40 16 21 C -0.03 -0.09 9.53 -39.18 -0.37 -0.46 16 22 C -0.09 -0.33 10.09 -39.47 -0.40 -0.73 16 23 C 0.25 2.00 8.02 -156.28 -1.25 0.74 16 24 N -0.32 -3.41 12.26 31.10 0.38 -3.03 16 25 N 0.00 -0.02 13.35 60.35 0.81 0.78 16 26 N -0.10 -1.10 13.99 60.35 0.84 -0.25 16 27 N -0.31 -2.62 3.92 -12.06 -0.05 -2.67 16 28 C 0.18 1.17 10.77 -16.51 -0.18 0.99 16 29 C -0.13 -1.57 5.97 -25.06 -0.15 -1.72 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.36 7.89 5.60 -40.82 -0.23 7.66 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.52 7.58 -51.93 -0.39 0.13 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.40 1.14 6.35 -40.82 -0.26 0.89 16 39 H 0.16 -0.15 6.44 -52.49 -0.34 -0.48 16 40 H 0.18 0.15 8.06 -52.49 -0.42 -0.27 16 41 H 0.20 1.12 7.57 -52.49 -0.40 0.72 16 42 H 0.07 0.89 7.74 -51.93 -0.40 0.49 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 361.16 15.07 5.44 5.44 Total: -1.00 -35.12 361.16 -6.58 -41.70 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -5.41 Total: 2.29 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -4.16 Total: -6.13 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 2.18 Total: -54.18 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: 0.09 Total: -5.88 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.71 Total: 16.75 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.12 -6.58 -41.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086757143.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.795 kcal (2) G-P(sol) polarization free energy of solvation -35.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds