Wall clock time and date at job start Tue Mar 31 2020 06:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99748 * 2 1 4 4 H 1.48501 * 109.46831 * 269.99964 * 3 2 1 5 5 H 1.48500 * 109.46925 * 29.99756 * 3 2 1 6 6 H 1.48497 * 109.46891 * 149.99986 * 3 2 1 7 7 C 1.38813 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00234 * 0.02562 * 7 2 1 9 9 N 1.36932 * 119.99695 * 179.97438 * 7 2 1 10 10 C 1.46510 * 119.99859 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.66920 * 36.78010 * 10 9 7 12 12 C 1.54886 * 110.75542 * 273.54796 * 10 9 7 13 13 C 1.54261 * 104.19530 * 203.55802 * 12 10 9 14 14 C 1.53877 * 106.59993 * 23.60964 * 13 12 10 15 15 H 1.08992 * 110.03144 * 240.66921 * 14 13 12 16 16 C 1.53006 * 110.03136 * 119.28514 * 14 13 12 17 17 N 1.46499 * 109.46897 * 66.45358 * 16 14 13 18 18 C 1.34780 * 119.99856 * 179.97438 * 17 16 14 19 19 O 1.21585 * 119.99779 * 0.02562 * 18 17 16 20 20 C 1.47689 * 120.00353 * 180.02562 * 18 17 16 21 21 C 1.41596 * 120.02972 * 359.97438 * 20 18 17 22 22 C 1.35780 * 119.55179 * 180.02562 * 21 20 18 23 23 C 1.40868 * 119.38830 * 359.96634 * 22 21 20 24 24 N 1.32486 * 133.41724 * 180.02562 * 23 22 21 25 25 N 1.28535 * 110.23690 * 179.97438 * 24 23 22 26 26 N 1.28975 * 110.84988 * 359.97438 * 25 24 23 27 27 N 1.36924 * 119.92945 * 0.02562 * 23 22 21 28 28 C 1.35505 * 120.84829 * 0.02562 * 27 23 22 29 29 C 1.54264 * 106.59844 * 0.02562 * 14 13 12 30 30 H 0.96994 * 120.00060 * 359.97438 * 1 2 3 31 31 H 0.97003 * 120.00734 * 0.02562 * 9 7 2 32 32 H 1.09003 * 110.48638 * 84.87661 * 12 10 9 33 33 H 1.09005 * 110.59875 * 322.29322 * 12 10 9 34 34 H 1.09007 * 110.03418 * 264.32725 * 13 12 10 35 35 H 1.09002 * 110.03606 * 142.89682 * 13 12 10 36 36 H 1.08997 * 109.46817 * 306.45344 * 16 14 13 37 37 H 1.08997 * 109.46816 * 186.45927 * 16 14 13 38 38 H 0.96997 * 120.00013 * 0.02562 * 17 16 14 39 39 H 1.08000 * 120.22587 * 0.02562 * 21 20 18 40 40 H 1.08000 * 120.30968 * 179.97438 * 22 21 20 41 41 H 1.07994 * 119.82459 * 179.72292 * 28 27 23 42 42 H 1.08997 * 110.48874 * 95.06361 * 29 14 13 43 43 H 1.08994 * 110.48758 * 217.71247 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3796 -1.2020 0.0000 10 6 4.1123 -2.4708 0.0000 11 1 3.5970 -3.2125 -0.6102 12 6 4.3097 -2.9906 1.4456 13 6 5.5414 -3.9144 1.3505 14 6 6.3408 -3.4558 0.1183 15 1 6.4111 -4.2684 -0.6047 16 6 7.7415 -3.0069 0.5396 17 7 8.4949 -4.1604 1.0375 18 6 9.7627 -4.0029 1.4667 19 8 10.2810 -2.9034 1.4410 20 6 10.5225 -5.1659 1.9681 21 6 9.9194 -6.4466 1.9987 22 6 10.6266 -7.5090 2.4622 23 6 11.9504 -7.3183 2.9044 24 7 12.8722 -8.1327 3.3967 25 7 13.9481 -7.4799 3.6586 26 7 13.8106 -6.2316 3.3649 27 7 12.5109 -6.0697 2.8643 28 6 11.8078 -5.0070 2.4035 29 6 5.5672 -2.2689 -0.4921 30 1 -0.4850 0.8400 0.0004 31 1 3.8647 -0.3620 -0.0004 32 1 3.4349 -3.5534 1.7714 33 1 4.5053 -2.1629 2.1274 34 1 5.2231 -4.9494 1.2251 35 1 6.1514 -3.8172 2.2486 36 1 7.6613 -2.2578 1.3273 37 1 8.2589 -2.5778 -0.3185 38 1 8.0814 -5.0377 1.0575 39 1 8.9037 -6.5776 1.6558 40 1 10.1785 -8.4912 2.4914 41 1 12.2647 -4.0286 2.3834 42 1 5.9670 -1.3237 -0.1249 43 1 5.6098 -2.3051 -1.5806 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086757143.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:06 Heat of formation + Delta-G solvation = 96.105191 kcal Electronic energy + Delta-G solvation = -26578.654024 eV Core-core repulsion = 22661.002094 eV Total energy + Delta-G solvation = -3917.651930 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.64367 -41.40197 -39.75639 -39.08337 -36.49830 -35.47551 -34.92950 -33.52188 -32.87594 -31.74970 -30.35643 -29.03772 -27.05166 -25.63023 -25.25719 -24.43775 -24.03610 -22.37006 -21.40728 -20.61452 -20.05983 -19.49908 -18.66542 -18.62962 -18.14327 -17.15391 -16.91993 -16.64492 -16.16158 -16.13891 -15.99940 -15.51166 -14.86078 -14.71631 -14.68079 -14.42173 -14.32262 -14.09908 -13.93097 -13.78408 -13.33491 -13.07280 -12.91263 -12.81661 -12.66883 -12.35421 -12.28296 -12.07787 -11.90951 -11.81688 -11.66934 -11.50593 -11.39187 -11.28522 -11.15851 -10.90934 -10.18206 -9.83343 -9.24102 -8.00210 -5.32075 -1.08848 -0.65310 0.40134 0.67933 1.39027 1.41692 1.47894 1.49006 1.94078 2.21721 2.47360 2.50039 2.91625 3.25445 3.31065 3.39820 3.62141 3.66672 3.69497 3.82665 3.87807 4.00398 4.21451 4.41351 4.43220 4.53167 4.61713 4.64613 4.69207 4.72094 4.79901 4.85292 4.95755 4.97844 5.07391 5.13850 5.18944 5.26983 5.32839 5.49724 5.61890 5.63797 5.82011 6.25480 6.40250 7.04953 7.05411 7.11929 7.91172 8.07321 9.21409 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.034475 B = 0.001882 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.994036 B =14876.689021 C =15360.944013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.068 4.068 3 Si 0.953 3.047 4 H -0.279 1.279 5 H -0.300 1.300 6 H -0.252 1.252 7 C -0.224 4.224 8 H 0.058 0.942 9 N -0.752 5.752 10 C 0.164 3.836 11 H 0.052 0.948 12 C -0.143 4.143 13 C -0.110 4.110 14 C -0.085 4.085 15 H 0.110 0.890 16 C 0.131 3.869 17 N -0.695 5.695 18 C 0.572 3.428 19 O -0.569 6.569 20 C -0.134 4.134 21 C -0.011 4.011 22 C -0.080 4.080 23 C 0.239 3.761 24 N -0.347 5.347 25 N -0.026 5.026 26 N -0.131 5.131 27 N -0.309 5.309 28 C 0.163 3.837 29 C -0.120 4.120 30 H 0.256 0.744 31 H 0.364 0.636 32 H 0.042 0.958 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.421 0.579 39 H 0.212 0.788 40 H 0.211 0.789 41 H 0.195 0.805 42 H 0.063 0.937 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.661 -16.860 2.099 28.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.259 4.259 3 Si 0.781 3.219 4 H -0.205 1.205 5 H -0.227 1.227 6 H -0.177 1.177 7 C -0.356 4.356 8 H 0.076 0.924 9 N -0.394 5.394 10 C 0.056 3.944 11 H 0.070 0.930 12 C -0.183 4.183 13 C -0.148 4.148 14 C -0.104 4.104 15 H 0.128 0.872 16 C 0.007 3.993 17 N -0.347 5.347 18 C 0.357 3.643 19 O -0.449 6.449 20 C -0.143 4.143 21 C -0.037 4.037 22 C -0.103 4.103 23 C -0.014 4.014 24 N -0.207 5.207 25 N -0.019 5.019 26 N -0.115 5.115 27 N -0.087 5.087 28 C 0.033 3.967 29 C -0.158 4.158 30 H 0.065 0.935 31 H 0.197 0.803 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.261 0.739 39 H 0.228 0.772 40 H 0.228 0.772 41 H 0.212 0.788 42 H 0.082 0.918 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 24.320 -16.584 2.691 29.559 hybrid contribution -0.838 1.601 -0.078 1.809 sum 23.482 -14.983 2.613 27.977 Atomic orbital electron populations 1.69880 1.07114 1.26483 1.60177 1.25496 0.96082 1.01184 1.03165 0.85435 0.78600 0.79865 0.78016 1.20493 1.22736 1.17707 1.19050 0.82863 0.93262 1.40390 0.92446 1.42800 1.02357 1.04210 1.90025 1.21501 0.91483 0.86702 0.94738 0.92968 1.22900 0.98028 0.98844 0.98570 1.22191 0.95136 0.99739 0.97717 1.21855 0.91979 0.98405 0.98154 0.87160 1.21487 0.90894 0.87693 0.99176 1.45654 1.12161 1.13621 1.63262 1.17630 0.82135 0.86812 0.77696 1.90878 1.69994 1.27445 1.56545 1.19644 0.93007 0.96483 1.05134 1.21943 1.02299 0.87913 0.91514 1.20896 0.86123 1.04316 0.98966 1.23796 0.98319 0.81426 0.97833 1.75088 0.97062 1.25836 1.22710 1.77863 1.16825 0.97869 1.09347 1.82822 0.93259 1.12825 1.22570 1.48796 1.11399 1.09562 1.38897 1.21903 0.91328 0.91735 0.91765 1.22528 0.93731 0.98654 1.00929 0.93537 0.80316 0.93944 0.93734 0.89261 0.90647 0.92182 0.91039 0.73942 0.77172 0.77178 0.78770 0.91849 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.29 13.97 21.65 0.30 -61.99 16 2 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 3 Si 0.95 44.62 27.74 68.60 1.90 46.52 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.25 -10.62 6.52 99.48 0.65 -9.97 16 7 C -0.22 -12.30 10.46 84.03 0.88 -11.42 16 8 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 9 N -0.75 -32.68 5.06 -316.80 -1.60 -34.29 16 10 C 0.16 5.24 3.53 46.29 0.16 5.40 16 11 H 0.05 1.77 8.12 -2.39 -0.02 1.75 16 12 C -0.14 -3.95 6.51 31.67 0.21 -3.74 16 13 C -0.11 -1.59 6.13 31.32 0.19 -1.40 16 14 C -0.08 -1.07 2.98 -10.07 -0.03 -1.10 16 15 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 16 C 0.13 1.59 4.70 86.38 0.41 2.00 16 17 N -0.69 -4.52 5.25 -466.10 -2.45 -6.96 16 18 C 0.57 6.39 7.77 86.74 0.67 7.07 16 19 O -0.57 -11.80 16.28 -3.98 -0.06 -11.86 16 20 C -0.13 -0.91 5.84 -20.33 -0.12 -1.03 16 21 C -0.01 0.01 9.53 22.53 0.21 0.22 16 22 C -0.08 -0.23 10.09 22.34 0.23 -0.01 16 23 C 0.24 3.40 8.02 134.16 1.08 4.47 16 24 N -0.35 -7.29 12.26 -55.52 -0.68 -7.97 16 25 N -0.03 -0.64 13.35 37.02 0.49 -0.14 16 26 N -0.13 -2.99 13.99 37.02 0.52 -2.48 16 27 N -0.31 -5.08 3.92 -192.06 -0.75 -5.84 16 28 C 0.16 1.90 10.77 83.75 0.90 2.80 16 29 C -0.12 -2.62 5.97 31.68 0.19 -2.43 16 30 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 31 H 0.36 15.33 5.60 -92.71 -0.52 14.81 16 32 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.07 0.92 7.58 -2.39 -0.02 0.90 16 36 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.42 -0.62 6.35 -92.71 -0.59 -1.20 16 39 H 0.21 -2.12 6.44 -2.91 -0.02 -2.14 16 40 H 0.21 -0.85 8.06 -2.91 -0.02 -0.87 16 41 H 0.20 2.22 7.57 -2.91 -0.02 2.20 16 42 H 0.06 1.48 7.74 -2.39 -0.02 1.46 16 43 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -83.54 361.16 3.02 -80.52 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -0.10 Total: 7.12 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 5.45 Total: -2.63 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -4.17 Total: -119.66 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -0.06 Total: -11.86 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.90 Total: 46.52 kcal Total: -83.54 3.02 -80.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086757143.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.622 kcal (2) G-P(sol) polarization free energy of solvation -83.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds