Wall clock time and date at job start Tue Mar 31 2020 05:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.99872 * 2 1 4 4 C 1.54326 * 109.88024 * 238.90239 * 2 1 3 5 5 H 1.08998 * 110.87468 * 336.82842 * 4 2 1 6 6 N 1.46508 * 110.71512 * 100.02502 * 4 2 1 7 7 C 1.34773 * 119.99842 * 199.97280 * 6 4 2 8 8 O 1.21510 * 120.00206 * 0.02562 * 7 6 4 9 9 C 1.48159 * 120.00104 * 180.02562 * 7 6 4 10 10 C 1.40184 * 121.00048 * 359.97438 * 9 7 6 11 11 C 1.38014 * 118.70755 * 180.30146 * 10 9 7 12 12 N 1.31665 * 121.43237 * 359.46549 * 11 10 9 13 13 C 1.32955 * 122.25795 * 0.50838 * 12 11 10 14 14 C 1.38871 * 121.00750 * 180.02562 * 9 7 6 15 15 C 1.50965 * 133.28483 * 359.96731 * 14 9 7 16 16 C 1.51442 * 103.92175 * 180.02562 * 15 14 9 17 17 O 1.21278 * 126.45382 * 180.02562 * 16 15 14 18 18 N 1.34351 * 107.09005 * 0.02562 * 16 15 14 19 19 C 1.55156 * 102.94353 * 218.38692 * 4 2 1 20 20 C 1.54917 * 101.57827 * 35.50762 * 19 4 2 21 21 N 1.47023 * 109.88240 * 121.10104 * 2 1 3 22 22 C 1.36938 * 125.64292 * 298.31770 * 21 2 1 23 23 H 1.08004 * 120.00477 * 0.02562 * 22 21 2 24 24 C 1.38813 * 119.99681 * 180.02562 * 22 21 2 25 25 N 1.31621 * 120.00301 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99960 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47119 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47168 * 120.00471 * 26 24 22 29 29 H 1.48498 * 109.47374 * 240.00026 * 26 24 22 30 30 H 1.09009 * 109.46742 * 181.09468 * 1 2 3 31 31 H 1.08998 * 109.46888 * 301.08862 * 1 2 3 32 32 H 1.08993 * 109.47115 * 61.09944 * 1 2 3 33 33 H 0.97000 * 119.99702 * 19.98304 * 6 4 2 34 34 H 1.08002 * 120.64282 * 0.02562 * 10 9 7 35 35 H 1.08000 * 119.28256 * 179.70017 * 11 10 9 36 36 H 1.09003 * 110.54412 * 298.61903 * 15 14 9 37 37 H 1.09004 * 110.53806 * 61.40025 * 15 14 9 38 38 H 0.97007 * 123.78567 * 180.02562 * 18 16 15 39 39 H 1.09000 * 111.00130 * 153.57900 * 19 4 2 40 40 H 1.08998 * 111.00483 * 277.39393 * 19 4 2 41 41 H 1.08996 * 110.36763 * 81.82635 * 20 19 4 42 42 H 1.09001 * 110.36177 * 204.14933 * 20 19 4 43 43 H 0.96997 * 120.00244 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2427 5 1 1.3064 -1.4458 -1.6211 6 7 2.4554 0.1961 -2.2875 7 6 2.5558 -0.2159 -3.5668 8 8 2.3137 -1.3716 -3.8537 9 6 2.9615 0.7403 -4.6234 10 6 3.2451 2.0783 -4.3161 11 6 3.6126 2.9297 -5.3382 12 7 3.7101 2.5078 -6.5817 13 6 3.4531 1.2497 -6.9264 14 6 3.0711 0.3384 -5.9482 15 6 2.8545 -0.9799 -6.6512 16 6 3.1609 -0.6736 -8.1023 17 8 3.1131 -1.4542 -9.0292 18 7 3.4955 0.6259 -8.1694 19 6 3.2877 -1.5143 -0.6925 20 6 2.8145 -1.8795 0.7368 21 7 2.0301 -0.7142 1.1839 22 6 1.8050 -0.3557 2.4862 23 1 1.2143 0.5201 2.7109 24 6 2.3362 -1.1180 3.5175 25 7 3.0565 -2.1850 3.2437 26 14 2.0287 -0.6294 5.2941 27 1 1.1950 0.5988 5.3325 28 1 1.3199 -1.7303 5.9947 29 1 3.3262 -0.3688 5.9676 30 1 -0.3633 -1.0276 0.0196 31 1 -0.3633 0.5306 0.8801 32 1 -0.3633 0.4966 -0.8996 33 1 2.6485 1.1187 -2.0585 34 1 3.1732 2.4369 -3.2999 35 1 3.8285 3.9636 -5.1127 36 1 3.5400 -1.7354 -6.2672 37 1 1.8210 -1.3077 -6.5393 38 1 3.7384 1.0786 -8.9923 39 1 3.4852 -2.4110 -1.2797 40 1 4.1656 -0.8690 -0.6611 41 1 2.1886 -2.7715 0.7128 42 1 3.6717 -2.0339 1.3922 43 1 3.4274 -2.7179 3.9644 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088704312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:18 Heat of formation + Delta-G solvation = 13.761630 kcal Electronic energy + Delta-G solvation = -27752.275306 eV Core-core repulsion = 23798.759940 eV Total energy + Delta-G solvation = -3953.515366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.17877 -40.05818 -39.13889 -37.64036 -36.48081 -34.27462 -33.59687 -32.16296 -30.90718 -30.43588 -29.02933 -28.52859 -25.51953 -24.20926 -24.02816 -22.86324 -21.81079 -21.08966 -20.28825 -19.95796 -18.51850 -17.66540 -17.27007 -16.86658 -16.63760 -16.18230 -15.54321 -15.37141 -14.95455 -14.83453 -14.47591 -14.26044 -14.07054 -13.92997 -13.76588 -13.43924 -13.10073 -12.88891 -12.71245 -12.21689 -12.10178 -11.65892 -11.47243 -11.21792 -10.93011 -10.92553 -10.72467 -10.63509 -10.57136 -10.30761 -10.16285 -10.12119 -9.87104 -9.74879 -9.62563 -8.82940 -8.78902 -8.71082 -6.94930 -5.71998 -3.15321 0.28140 0.48166 1.93371 2.17746 2.73777 2.95990 3.35070 3.40643 3.43223 3.44564 3.51935 3.98279 4.15482 4.25748 4.35127 4.43486 4.69675 4.94710 5.11659 5.12622 5.25916 5.34479 5.41465 5.44237 5.53889 5.54084 5.70929 5.82769 6.02286 6.04307 6.12775 6.20076 6.24406 6.30233 6.42369 6.49690 6.62515 6.76829 6.98939 7.24519 7.42282 7.49662 7.52484 7.56195 7.78458 8.09961 8.28334 9.13818 9.74706 10.37625 11.31336 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.025748 B = 0.002512 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.218942 B =11143.168071 C =11673.594429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.036 0.964 4 C 0.134 3.866 5 H 0.095 0.905 6 N -0.703 5.703 7 C 0.553 3.447 8 O -0.524 6.524 9 C -0.032 4.032 10 C -0.164 4.164 11 C 0.139 3.861 12 N -0.491 5.491 13 C 0.348 3.652 14 C -0.131 4.131 15 C -0.106 4.106 16 C 0.537 3.463 17 O -0.492 6.492 18 N -0.646 5.646 19 C -0.153 4.153 20 C 0.152 3.848 21 N -0.595 5.595 22 C -0.221 4.221 23 H 0.079 0.921 24 C -0.010 4.010 25 N -0.920 5.920 26 Si 0.914 3.086 27 H -0.280 1.280 28 H -0.290 1.290 29 H -0.290 1.290 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.399 0.601 34 H 0.151 0.849 35 H 0.174 0.826 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.418 0.582 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.015 0.985 42 H 0.110 0.890 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.041 9.938 -17.853 20.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.048 3.952 3 H 0.054 0.946 4 C 0.030 3.970 5 H 0.113 0.887 6 N -0.353 5.353 7 C 0.338 3.662 8 O -0.401 6.401 9 C -0.043 4.043 10 C -0.186 4.186 11 C -0.018 4.018 12 N -0.207 5.207 13 C 0.116 3.884 14 C -0.137 4.137 15 C -0.146 4.146 16 C 0.324 3.676 17 O -0.364 6.364 18 N -0.293 5.293 19 C -0.192 4.192 20 C 0.027 3.973 21 N -0.320 5.320 22 C -0.350 4.350 23 H 0.096 0.904 24 C -0.205 4.205 25 N -0.568 5.568 26 Si 0.745 3.255 27 H -0.205 1.205 28 H -0.217 1.217 29 H -0.217 1.217 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.234 0.766 34 H 0.168 0.832 35 H 0.191 0.809 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.257 0.743 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.033 0.967 42 H 0.128 0.872 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.089 9.015 -18.931 20.997 hybrid contribution -0.205 0.524 1.324 1.438 sum 0.884 9.539 -17.608 20.045 Atomic orbital electron populations 1.22255 0.97773 1.01558 0.99994 1.20976 0.92665 0.94747 0.86820 0.94616 1.22257 0.97883 0.90663 0.86154 0.88701 1.45999 1.68246 1.14336 1.06751 1.18023 0.78428 0.87309 0.82411 1.90785 1.49195 1.18084 1.82037 1.19678 0.98214 0.94226 0.92177 1.22334 1.01707 0.92644 1.01908 1.22458 0.93731 1.00189 0.85408 1.66610 1.17523 1.14315 1.22206 1.18252 0.95122 0.89469 0.85596 1.20405 1.03572 0.96913 0.92858 1.21081 1.07193 0.96360 0.89919 1.20678 0.74876 0.80310 0.91717 1.90848 1.51136 1.50541 1.43848 1.43536 1.65988 1.11334 1.08394 1.23413 0.96579 0.99408 0.99844 1.21963 0.97440 0.88409 0.89456 1.44493 1.59251 1.28218 1.00049 1.19057 1.27237 1.08236 0.80423 0.90366 1.24795 1.00284 0.97347 0.98098 1.69795 1.39028 1.17851 1.30140 0.86012 0.77370 0.77562 0.84599 1.20535 1.21746 1.21736 0.92842 0.92609 0.94309 0.76581 0.83186 0.80947 0.84614 0.84664 0.74251 0.91810 0.91913 0.96668 0.87248 0.93678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.14 37.16 0.34 -2.33 16 2 C 0.16 2.86 3.48 -66.95 -0.23 2.63 16 3 H 0.04 0.63 7.68 -51.93 -0.40 0.23 16 4 C 0.13 2.20 2.76 -66.09 -0.18 2.02 16 5 H 0.10 1.67 7.41 -51.93 -0.38 1.29 16 6 N -0.70 -8.85 5.16 -52.87 -0.27 -9.12 16 7 C 0.55 7.14 7.80 -12.19 -0.10 7.05 16 8 O -0.52 -8.35 15.36 5.36 0.08 -8.27 16 9 C -0.03 -0.32 5.89 -104.86 -0.62 -0.94 16 10 C -0.16 -1.20 9.64 -38.93 -0.38 -1.58 16 11 C 0.14 0.97 11.14 -17.71 -0.20 0.77 16 12 N -0.49 -4.48 10.36 -12.37 -0.13 -4.61 16 13 C 0.35 3.33 8.27 -154.44 -1.28 2.06 16 14 C -0.13 -1.34 6.17 -103.96 -0.64 -1.98 16 15 C -0.11 -1.05 5.63 -28.54 -0.16 -1.21 16 16 C 0.54 5.56 8.71 -10.81 -0.09 5.46 16 17 O -0.49 -6.57 18.03 5.56 0.10 -6.47 16 18 N -0.65 -5.60 5.85 -11.21 -0.07 -5.67 16 19 C -0.15 -2.81 6.77 -24.58 -0.17 -2.98 16 20 C 0.15 3.52 5.89 -2.53 -0.01 3.51 16 21 N -0.59 -13.99 3.13 -162.57 -0.51 -14.50 16 22 C -0.22 -5.75 9.89 -15.06 -0.15 -5.90 16 23 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 24 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 25 N -0.92 -25.80 10.09 55.49 0.56 -25.24 16 26 Si 0.91 21.21 29.55 -169.99 -5.02 16.19 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 29 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 30 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 31 H 0.05 0.99 8.04 -51.93 -0.42 0.58 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.40 3.93 6.47 -40.82 -0.26 3.66 16 34 H 0.15 0.73 6.56 -52.49 -0.34 0.38 16 35 H 0.17 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.14 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.14 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.42 2.81 8.96 -40.82 -0.37 2.44 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.11 2.86 5.87 -51.93 -0.30 2.56 16 43 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 357.71 15.07 5.39 5.39 Total: -1.00 -32.30 357.71 -9.24 -41.54 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.41 Total: 4.54 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -3.96 Total: 6.22 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.42 Total: -59.13 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.18 Total: -14.73 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.30 -9.24 -41.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088704312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.299 kcal (2) G-P(sol) polarization free energy of solvation -32.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds