Wall clock time and date at job start Tue Mar 31 2020 04:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00253 * 2 1 4 4 H 1.48498 * 109.47058 * 269.99811 * 3 2 1 5 5 H 1.48501 * 109.47092 * 29.99924 * 3 2 1 6 6 H 1.48502 * 109.47357 * 149.99856 * 3 2 1 7 7 C 1.38820 * 119.99700 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99679 * 163.08103 * 7 2 1 9 9 N 1.36937 * 119.99681 * 343.08706 * 7 2 1 10 10 C 1.46934 * 120.62480 * 151.83284 * 9 7 2 11 11 C 1.53189 * 108.77365 * 126.36634 * 10 9 7 12 12 C 1.53044 * 109.31314 * 54.63488 * 11 10 9 13 13 H 1.09000 * 109.45957 * 178.62507 * 12 11 10 14 14 N 1.46499 * 109.46209 * 58.65358 * 12 11 10 15 15 C 1.34775 * 120.00148 * 84.97460 * 14 12 11 16 16 O 1.21591 * 119.99617 * 359.72210 * 15 14 12 17 17 C 1.47578 * 120.00034 * 179.72452 * 15 14 12 18 18 C 1.40079 * 120.35821 * 359.72072 * 17 15 14 19 19 N 1.31168 * 121.11966 * 179.70714 * 18 17 15 20 20 C 1.33367 * 121.67215 * 0.61773 * 19 18 17 21 21 C 1.41854 * 133.16632 * 179.70113 * 20 19 18 22 22 C 1.34446 * 107.96025 * 179.97438 * 21 20 19 23 23 N 1.36544 * 109.71632 * 359.97438 * 22 21 20 24 24 H 0.96993 * 125.59912 * 179.97438 * 23 22 21 25 25 C 1.37853 * 108.80130 * 0.02562 * 23 22 21 26 26 C 1.38729 * 133.56954 * 179.97438 * 25 23 22 27 27 C 1.53040 * 109.52555 * 298.63878 * 12 11 10 28 28 H 1.09003 * 109.49969 * 301.41106 * 27 12 11 29 29 O 1.42898 * 109.49813 * 181.31006 * 27 12 11 30 30 C 1.46926 * 120.63529 * 331.80525 * 9 7 2 31 31 H 0.96999 * 119.99504 * 0.02562 * 1 2 3 32 32 H 1.08991 * 109.58731 * 6.57759 * 10 9 7 33 33 H 1.08998 * 109.58079 * 246.14997 * 10 9 7 34 34 H 1.08993 * 109.50285 * 294.68121 * 11 10 9 35 35 H 1.09002 * 109.52219 * 174.59904 * 11 10 9 36 36 H 0.97000 * 119.99648 * 264.69576 * 14 12 11 37 37 H 1.07998 * 119.44337 * 0.02562 * 18 17 15 38 38 H 1.08001 * 126.01803 * 359.97268 * 21 20 19 39 39 H 1.08002 * 125.14812 * 180.02562 * 22 21 20 40 40 H 1.08003 * 120.91307 * 0.02562 * 26 25 23 41 41 H 0.96701 * 114.00228 * 179.97438 * 29 27 12 42 42 H 1.09002 * 109.58252 * 353.41806 * 30 9 7 43 43 H 1.08997 * 109.58697 * 113.70529 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2023 0.0005 8 1 3.0552 -1.2226 -0.2716 9 7 1.3699 -2.3623 0.3461 10 6 1.8139 -3.6530 -0.1979 11 6 2.0681 -4.6170 0.9652 12 6 0.8130 -4.7006 1.8369 13 1 0.9829 -5.4046 2.6515 14 7 -0.3164 -5.1583 1.0239 15 6 -0.5180 -6.4771 0.8321 16 8 0.2405 -7.2866 1.3298 17 6 -1.6593 -6.9384 0.0181 18 6 -2.5411 -6.0124 -0.5539 19 7 -3.5569 -6.4056 -1.2846 20 6 -3.8023 -7.6978 -1.5051 21 6 -4.8080 -8.3843 -2.2328 22 6 -4.5738 -9.7034 -2.1204 23 7 -3.4626 -9.9103 -1.3542 24 1 -3.0874 -10.7750 -1.1257 25 6 -2.9623 -8.6884 -0.9580 26 6 -1.8757 -8.3051 -0.1854 27 6 0.4985 -3.3187 2.4145 28 1 1.3484 -2.9667 2.9993 29 8 -0.6557 -3.4036 3.2528 30 6 0.2263 -2.3401 1.2682 31 1 -0.4849 0.8401 -0.0004 32 1 2.7343 -3.5134 -0.7648 33 1 1.0400 -4.0610 -0.8482 34 1 2.9031 -4.2529 1.5636 35 1 2.3054 -5.6061 0.5733 36 1 -0.9215 -4.5124 0.6269 37 1 -2.3789 -4.9566 -0.3948 38 1 -5.6190 -7.9276 -2.7807 39 1 -5.1733 -10.4818 -2.5689 40 1 -1.2146 -9.0418 0.2466 41 1 -0.9131 -2.5623 3.6540 42 1 0.0993 -1.3343 1.6687 43 1 -0.6774 -2.6386 0.7369 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090353614.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:39 Heat of formation + Delta-G solvation = 15.268077 kcal Electronic energy + Delta-G solvation = -28308.091193 eV Core-core repulsion = 24354.641152 eV Total energy + Delta-G solvation = -3953.450041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.90023 -39.93930 -38.20996 -37.32060 -35.28431 -34.13330 -33.00500 -32.04800 -30.33864 -30.18939 -29.18112 -28.67812 -25.42445 -24.05361 -23.64770 -22.32576 -21.78997 -21.07815 -20.71539 -18.91039 -18.51818 -17.46995 -16.95614 -16.61190 -16.46873 -16.04758 -15.31743 -15.07049 -14.92885 -14.54764 -14.39259 -13.98188 -13.71150 -13.60359 -13.44521 -13.38087 -13.01877 -12.76123 -12.57556 -12.51373 -12.25067 -11.84041 -11.67656 -11.08541 -11.01724 -10.81966 -10.49638 -10.41780 -10.23122 -10.06254 -9.99739 -9.60743 -9.36320 -9.26721 -8.75807 -8.61532 -8.53850 -8.29720 -6.77417 -5.88647 -3.32125 0.50521 1.19048 2.27677 2.67039 3.16609 3.32490 3.40335 3.42213 3.46200 3.96284 4.11528 4.40532 4.49013 4.59975 4.74898 4.84522 4.88569 5.03821 5.19262 5.26406 5.39654 5.43081 5.49562 5.69726 5.75475 5.82890 5.93186 5.96762 6.03579 6.16009 6.22861 6.24644 6.43339 6.45064 6.69460 6.71517 6.80543 6.93185 7.05508 7.08087 7.40713 7.71435 7.82642 7.93578 8.09953 8.34904 8.46595 9.09894 9.72603 10.28491 11.19541 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.018018 B = 0.003046 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.610051 B = 9189.730384 C = 9879.109308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.068 0.932 9 N -0.587 5.587 10 C 0.144 3.856 11 C -0.145 4.145 12 C 0.166 3.834 13 H 0.080 0.920 14 N -0.696 5.696 15 C 0.566 3.434 16 O -0.551 6.551 17 C -0.170 4.170 18 C 0.138 3.862 19 N -0.453 5.453 20 C 0.112 3.888 21 C -0.198 4.198 22 C 0.075 3.925 23 N -0.582 5.582 24 H 0.421 0.579 25 C 0.023 3.977 26 C -0.016 4.016 27 C 0.066 3.934 28 H 0.063 0.937 29 O -0.573 6.573 30 C 0.145 3.855 31 H 0.255 0.745 32 H 0.057 0.943 33 H 0.021 0.979 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.405 0.595 37 H 0.163 0.837 38 H 0.154 0.846 39 H 0.180 0.820 40 H 0.144 0.856 41 H 0.376 0.624 42 H 0.093 0.907 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.485 -17.565 -0.574 19.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.385 4.385 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.018 3.982 11 C -0.185 4.185 12 C 0.061 3.939 13 H 0.098 0.902 14 N -0.347 5.347 15 C 0.352 3.648 16 O -0.431 6.431 17 C -0.176 4.176 18 C -0.033 4.033 19 N -0.161 5.161 20 C -0.019 4.019 21 C -0.224 4.224 22 C -0.055 4.055 23 N -0.185 5.185 24 H 0.259 0.741 25 C -0.086 4.086 26 C -0.045 4.045 27 C 0.005 3.995 28 H 0.081 0.919 29 O -0.377 6.377 30 C 0.018 3.982 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.039 0.961 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.242 0.758 37 H 0.180 0.820 38 H 0.171 0.829 39 H 0.197 0.803 40 H 0.162 0.838 41 H 0.223 0.777 42 H 0.111 0.889 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -7.581 -18.134 -0.783 19.670 hybrid contribution 0.812 0.812 0.376 1.209 sum -6.769 -17.321 -0.406 18.601 Atomic orbital electron populations 1.70010 1.05215 1.25718 1.53572 1.25064 0.95329 0.98495 1.00622 0.86297 0.79164 0.83490 0.77816 1.21318 1.21526 1.20468 1.19177 0.92683 0.84586 1.42058 0.91475 1.43958 1.35723 1.01875 1.49611 1.20932 0.97999 0.86392 0.92854 1.22409 0.96445 1.00346 0.99290 1.20854 0.85678 0.94708 0.92634 0.90159 1.45902 1.30477 1.06350 1.51964 1.17811 0.83956 0.82838 0.80173 1.90733 1.47467 1.53934 1.50923 1.20679 0.99240 0.93864 1.03863 1.22881 0.88934 0.99815 0.91625 1.67227 1.18631 1.15989 1.14214 1.19226 0.95883 0.88255 0.98556 1.20597 1.02506 0.91663 1.07590 1.22030 0.89616 0.97826 0.96051 1.41720 1.25026 1.06878 1.44901 0.74114 1.19008 0.99169 0.86805 1.03611 1.20502 0.93943 0.95651 0.94428 1.22939 0.87853 0.95723 0.92952 0.91897 1.86415 1.48238 1.36925 1.66154 1.21397 0.89522 0.98564 0.88667 0.93486 0.92439 0.96119 0.91041 0.91664 0.75769 0.81969 0.82857 0.80291 0.83827 0.77674 0.88894 0.95724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.68 11.20 55.49 0.62 -24.06 16 2 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 3 Si 0.90 20.85 29.59 -169.99 -5.03 15.83 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.26 -6.66 9.58 -15.06 -0.14 -6.80 16 8 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 9 N -0.59 -13.73 2.99 -172.34 -0.52 -14.24 16 10 C 0.14 2.92 6.26 -3.71 -0.02 2.90 16 11 C -0.14 -2.56 5.77 -26.61 -0.15 -2.72 16 12 C 0.17 2.94 2.47 -67.89 -0.17 2.77 16 13 H 0.08 1.48 7.58 -51.93 -0.39 1.08 16 14 N -0.70 -11.80 4.11 -54.79 -0.22 -12.03 16 15 C 0.57 9.60 7.73 -12.45 -0.10 9.51 16 16 O -0.55 -10.55 16.06 5.29 0.08 -10.47 16 17 C -0.17 -2.55 5.89 -104.79 -0.62 -3.17 16 18 C 0.14 2.07 10.69 -17.15 -0.18 1.88 16 19 N -0.45 -7.03 10.40 -10.71 -0.11 -7.15 16 20 C 0.11 1.52 7.32 -84.80 -0.62 0.90 16 21 C -0.20 -1.99 10.84 -39.54 -0.43 -2.42 16 22 C 0.08 0.52 11.82 -16.79 -0.20 0.32 16 23 N -0.58 -4.53 6.14 -10.66 -0.07 -4.60 16 24 H 0.42 1.88 8.96 -40.82 -0.37 1.52 16 25 C 0.02 0.27 7.27 -83.96 -0.61 -0.34 16 26 C -0.02 -0.21 9.72 -38.79 -0.38 -0.59 16 27 C 0.07 1.20 3.36 -26.63 -0.09 1.11 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 29 O -0.57 -9.60 13.21 -35.23 -0.47 -10.07 16 30 C 0.15 3.14 4.63 -3.73 -0.02 3.12 16 31 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 33 H 0.02 0.43 7.74 -51.93 -0.40 0.03 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.40 6.80 4.90 -40.82 -0.20 6.60 16 37 H 0.16 2.30 6.39 -52.49 -0.34 1.96 16 38 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.18 0.43 8.06 -52.49 -0.42 0.01 16 40 H 0.14 1.71 7.72 -52.48 -0.41 1.31 16 41 H 0.38 5.04 9.08 45.56 0.41 5.45 16 42 H 0.09 2.25 6.06 -51.93 -0.31 1.93 16 43 H 0.02 0.56 6.65 -51.93 -0.35 0.21 16 LS Contribution 353.02 15.07 5.32 5.32 Total: -1.00 -33.15 353.02 -8.62 -41.77 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -4.42 Total: 13.19 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -3.81 Total: 6.50 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: -0.30 Total: -62.07 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.38 Total: -20.53 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.15 -8.62 -41.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090353614.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.039 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds