Wall clock time and date at job start Tue Mar 31 2020 04:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99811 * 2 1 4 4 H 1.48498 * 109.47413 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.47123 * 300.00020 * 3 2 1 6 6 H 1.48503 * 109.47005 * 59.99617 * 3 2 1 7 7 C 1.38810 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99701 * 197.37476 * 7 2 1 9 9 N 1.36938 * 120.00253 * 17.36723 * 7 2 1 10 10 C 1.46917 * 120.63140 * 207.66260 * 9 7 2 11 11 C 1.53198 * 108.77665 * 233.63257 * 10 9 7 12 12 C 1.53039 * 109.31179 * 305.36450 * 11 10 9 13 13 H 1.08999 * 109.45023 * 301.35398 * 12 11 10 14 14 N 1.46494 * 109.45713 * 181.38164 * 12 11 10 15 15 C 1.34779 * 119.99615 * 84.94068 * 14 12 11 16 16 O 1.21587 * 120.00257 * 359.97438 * 15 14 12 17 17 C 1.47586 * 119.99887 * 179.97438 * 15 14 12 18 18 C 1.40084 * 120.35697 * 359.97438 * 17 15 14 19 19 N 1.31168 * 121.12148 * 179.70561 * 18 17 15 20 20 C 1.33369 * 121.67237 * 0.02562 * 19 18 17 21 21 C 1.41856 * 133.16761 * 180.02562 * 20 19 18 22 22 C 1.34456 * 107.95820 * 179.97438 * 21 20 19 23 23 N 1.36543 * 109.71550 * 0.02562 * 22 21 20 24 24 H 0.96996 * 125.60203 * 179.97438 * 23 22 21 25 25 C 1.37858 * 108.80518 * 359.97438 * 23 22 21 26 26 C 1.38722 * 133.57059 * 180.02562 * 25 23 22 27 27 C 1.53043 * 109.53217 * 61.36458 * 12 11 10 28 28 H 1.08999 * 109.49959 * 58.62215 * 27 12 11 29 29 O 1.42907 * 109.49312 * 178.68036 * 27 12 11 30 30 C 1.46923 * 120.62737 * 27.68765 * 9 7 2 31 31 H 0.96997 * 119.99846 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.58740 * 353.41894 * 10 9 7 33 33 H 1.09004 * 109.58798 * 113.84562 * 10 9 7 34 34 H 1.09002 * 109.49451 * 185.41429 * 11 10 9 35 35 H 1.09000 * 109.49454 * 65.31726 * 11 10 9 36 36 H 0.96998 * 120.00629 * 264.92806 * 14 12 11 37 37 H 1.08001 * 119.44346 * 359.72226 * 18 17 15 38 38 H 1.07997 * 126.02055 * 359.97438 * 21 20 19 39 39 H 1.08000 * 125.14482 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.90970 * 359.96851 * 26 25 23 41 41 H 0.96702 * 114.00006 * 180.02562 * 29 27 12 42 42 H 1.08996 * 109.59013 * 6.58124 * 30 9 7 43 43 H 1.09002 * 109.70589 * 246.22186 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2235 0.2788 9 7 1.3725 -2.3609 -0.3550 10 6 1.8198 -3.6548 0.1782 11 6 2.0756 -4.6088 -0.9929 12 6 0.8202 -4.6883 -1.8645 13 1 -0.0188 -5.0356 -1.2617 14 7 1.0501 -5.6252 -2.9670 15 6 0.8501 -6.9452 -2.7823 16 8 0.4793 -7.3584 -1.7006 17 6 1.0812 -7.8891 -3.8931 18 6 1.5079 -7.4211 -5.1426 19 7 1.7233 -8.2472 -6.1384 20 6 1.5465 -9.5626 -6.0079 21 6 1.7025 -10.6559 -6.8982 22 6 1.3842 -11.7805 -6.2335 23 7 1.0273 -11.4728 -4.9520 24 1 0.7549 -12.1099 -4.2732 25 6 1.1177 -10.1079 -4.7811 26 6 0.8809 -9.2608 -3.7083 27 6 0.5020 -3.3026 -2.4310 28 1 1.3505 -2.9442 -3.0139 29 8 -0.6524 -3.3837 -3.2694 30 6 0.2283 -2.3338 -1.2763 31 1 -0.4850 0.8400 -0.0004 32 1 2.7403 -3.5177 0.7456 33 1 1.0473 -4.0699 0.8256 34 1 2.3151 -5.6004 -0.6086 35 1 2.9095 -4.2378 -1.5888 36 1 1.3461 -5.2956 -3.8299 37 1 1.6624 -6.3622 -5.2884 38 1 2.0209 -10.5956 -7.9284 39 1 1.4065 -12.7766 -6.6504 40 1 0.5513 -9.6501 -2.7563 41 1 -0.9121 -2.5398 -3.6638 42 1 0.0987 -1.3252 -1.6685 43 1 -0.6754 -2.6398 -0.7491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090353615.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:42 Heat of formation + Delta-G solvation = 12.599420 kcal Electronic energy + Delta-G solvation = -27680.030150 eV Core-core repulsion = 23726.464387 eV Total energy + Delta-G solvation = -3953.565763 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.03027 -39.91316 -38.23006 -37.44034 -35.26231 -34.41140 -33.13661 -32.22681 -30.47173 -30.23793 -29.11499 -28.71738 -25.40313 -23.98254 -23.76167 -22.38455 -21.72449 -21.20450 -20.43330 -19.55311 -18.63500 -17.55180 -16.97865 -16.73767 -16.50115 -16.21416 -15.47838 -15.39692 -14.81745 -14.57804 -14.44930 -13.91104 -13.75295 -13.59110 -13.54930 -13.28857 -13.15735 -12.79185 -12.71900 -12.59246 -12.20025 -11.97534 -11.66577 -11.22889 -10.85231 -10.77469 -10.60788 -10.40427 -10.25094 -10.18473 -10.00514 -9.63856 -9.46878 -9.31423 -8.85669 -8.73213 -8.54912 -8.41830 -6.78745 -5.87345 -3.30675 0.37475 1.03542 2.15902 2.55544 3.04212 3.30378 3.33893 3.41179 3.43231 3.81838 3.95734 4.36458 4.41218 4.56449 4.63586 4.70602 4.72665 4.90876 5.07295 5.28510 5.30874 5.40866 5.45990 5.60057 5.62379 5.81531 5.91717 5.99819 6.02377 6.09329 6.10898 6.21685 6.43881 6.46849 6.55445 6.70375 6.82086 6.90869 6.96323 7.11951 7.45754 7.67814 7.73034 7.76194 8.10605 8.34457 8.36793 9.11057 9.73931 10.29930 11.21101 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.031221 B = 0.002373 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.605303 B =11795.944467 C =12027.188958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.254 4.254 8 H 0.069 0.931 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.140 4.140 12 C 0.163 3.837 13 H 0.090 0.910 14 N -0.707 5.707 15 C 0.564 3.436 16 O -0.542 6.542 17 C -0.171 4.171 18 C 0.134 3.866 19 N -0.455 5.455 20 C 0.111 3.889 21 C -0.199 4.199 22 C 0.078 3.922 23 N -0.581 5.581 24 H 0.422 0.578 25 C 0.025 3.975 26 C -0.015 4.015 27 C 0.072 3.928 28 H 0.053 0.947 29 O -0.573 6.573 30 C 0.148 3.852 31 H 0.255 0.745 32 H 0.061 0.939 33 H 0.024 0.976 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.397 0.603 37 H 0.161 0.839 38 H 0.154 0.846 39 H 0.181 0.819 40 H 0.145 0.855 41 H 0.376 0.624 42 H 0.094 0.906 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.270 -21.140 -12.946 24.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.180 4.180 12 C 0.059 3.941 13 H 0.108 0.892 14 N -0.356 5.356 15 C 0.350 3.650 16 O -0.420 6.420 17 C -0.177 4.177 18 C -0.036 4.036 19 N -0.163 5.163 20 C -0.020 4.020 21 C -0.225 4.225 22 C -0.053 4.053 23 N -0.184 5.184 24 H 0.260 0.740 25 C -0.084 4.084 26 C -0.044 4.044 27 C 0.011 3.989 28 H 0.071 0.929 29 O -0.377 6.377 30 C 0.021 3.979 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.232 0.768 37 H 0.178 0.822 38 H 0.172 0.828 39 H 0.198 0.802 40 H 0.163 0.837 41 H 0.223 0.777 42 H 0.112 0.888 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.178 -21.739 -12.735 25.289 hybrid contribution 0.071 1.015 0.533 1.149 sum 2.249 -20.724 -12.202 24.155 Atomic orbital electron populations 1.70041 1.05263 1.25589 1.53706 1.25080 0.95321 0.98569 1.00728 0.86213 0.79404 0.83764 0.77335 1.20179 1.21504 1.21661 1.19247 0.92869 0.84626 1.41615 0.91297 1.44021 1.35645 1.01789 1.49865 1.20944 0.98249 0.86303 0.92699 1.22429 0.96646 1.00295 0.98645 1.21039 0.98777 0.87011 0.87284 0.89237 1.46007 1.67886 1.05951 1.15744 1.17840 0.77648 0.82372 0.87110 1.90774 1.46970 1.77990 1.26275 1.20702 1.06960 0.93808 0.96270 1.22793 0.94264 0.99408 0.87177 1.67194 1.15086 1.02099 1.31913 1.19200 0.99861 0.90747 0.92192 1.20590 1.11788 0.89317 1.00766 1.22061 0.99694 1.00126 0.83447 1.41753 1.58552 1.05593 1.12491 0.73982 1.19011 1.06979 0.84729 0.97730 1.20546 0.95523 0.91051 0.97254 1.22985 0.87169 0.95320 0.93464 0.92901 1.86419 1.48304 1.36644 1.66365 1.21416 0.89809 0.98293 0.88390 0.93533 0.92071 0.95812 0.91753 0.91877 0.76802 0.82163 0.82844 0.80209 0.83698 0.77675 0.88760 0.95209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.38 11.19 55.49 0.62 -24.75 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 3 Si 0.90 21.02 29.59 -169.99 -5.03 15.99 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.25 -6.73 9.58 -15.06 -0.14 -6.87 16 8 H 0.07 1.80 7.89 -52.48 -0.41 1.38 16 9 N -0.59 -14.28 2.99 -172.32 -0.52 -14.79 16 10 C 0.14 3.02 6.52 -3.71 -0.02 3.00 16 11 C -0.14 -2.50 5.65 -26.61 -0.15 -2.65 16 12 C 0.16 2.90 2.12 -67.89 -0.14 2.76 16 13 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 14 N -0.71 -10.63 4.87 -54.79 -0.27 -10.89 16 15 C 0.56 8.89 7.73 -12.45 -0.10 8.79 16 16 O -0.54 -10.26 16.06 5.29 0.08 -10.18 16 17 C -0.17 -2.26 5.89 -104.79 -0.62 -2.88 16 18 C 0.13 1.64 10.69 -17.14 -0.18 1.46 16 19 N -0.46 -5.98 10.40 -10.70 -0.11 -6.09 16 20 C 0.11 1.32 7.32 -84.80 -0.62 0.70 16 21 C -0.20 -1.71 10.84 -39.54 -0.43 -2.13 16 22 C 0.08 0.44 11.82 -16.79 -0.20 0.24 16 23 N -0.58 -3.89 6.14 -10.66 -0.07 -3.96 16 24 H 0.42 1.51 8.96 -40.82 -0.37 1.15 16 25 C 0.02 0.26 7.27 -83.96 -0.61 -0.35 16 26 C -0.01 -0.18 9.72 -38.80 -0.38 -0.55 16 27 C 0.07 1.31 3.14 -26.61 -0.08 1.23 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 29 O -0.57 -9.64 13.16 -35.23 -0.46 -10.10 16 30 C 0.15 3.38 4.94 -3.71 -0.02 3.36 16 31 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.40 4.99 6.63 -40.82 -0.27 4.72 16 37 H 0.16 1.60 6.39 -52.49 -0.34 1.26 16 38 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.18 0.24 8.06 -52.49 -0.42 -0.19 16 40 H 0.15 1.61 7.72 -52.49 -0.41 1.21 16 41 H 0.38 5.07 9.08 45.56 0.41 5.48 16 42 H 0.09 2.35 6.03 -51.93 -0.31 2.04 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 357.22 15.07 5.38 5.38 Total: -1.00 -34.44 357.22 -8.74 -43.17 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -4.59 Total: 10.17 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -3.78 Total: 6.06 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: -0.34 Total: -60.49 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.38 Total: -20.28 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.44 -8.74 -43.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090353615.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.772 kcal (2) G-P(sol) polarization free energy of solvation -34.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds