Wall clock time and date at job start Tue Mar 31 2020 04:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00068 * 2 1 4 4 H 1.48501 * 109.46669 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46948 * 119.99806 * 3 2 1 6 6 H 1.48498 * 109.47140 * 240.00458 * 3 2 1 7 7 C 1.38811 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00157 * 162.76785 * 7 2 1 9 9 N 1.36943 * 119.99955 * 342.76805 * 7 2 1 10 10 C 1.46923 * 120.62930 * 332.17173 * 9 7 2 11 11 C 1.52755 * 109.00900 * 233.58508 * 10 9 7 12 12 C 1.53044 * 109.38132 * 305.58408 * 11 10 9 13 13 H 1.09001 * 109.44878 * 181.24858 * 12 11 10 14 14 N 1.46497 * 109.46189 * 301.22024 * 12 11 10 15 15 C 1.34777 * 120.00361 * 275.06459 * 14 12 11 16 16 O 1.21592 * 119.99380 * 0.02562 * 15 14 12 17 17 C 1.47573 * 120.00303 * 180.02562 * 15 14 12 18 18 C 1.40087 * 120.35801 * 359.72222 * 17 15 14 19 19 N 1.31167 * 121.12312 * 179.74177 * 18 17 15 20 20 C 1.33368 * 121.67050 * 0.54974 * 19 18 17 21 21 C 1.41854 * 133.16653 * 179.69254 * 20 19 18 22 22 C 1.34463 * 107.95604 * 180.02562 * 21 20 19 23 23 N 1.36537 * 109.71467 * 359.97438 * 22 21 20 24 24 H 0.97001 * 125.59497 * 180.02562 * 23 22 21 25 25 C 1.37853 * 108.80825 * 0.02562 * 23 22 21 26 26 C 1.38728 * 133.56937 * 179.97438 * 25 23 22 27 27 C 1.53046 * 109.53404 * 61.24392 * 12 11 10 28 28 H 1.08999 * 109.49861 * 58.58399 * 27 12 11 29 29 O 1.42898 * 109.49343 * 178.68351 * 27 12 11 30 30 C 1.46927 * 120.63120 * 152.45061 * 9 7 2 31 31 H 0.96995 * 120.00322 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.58782 * 353.41781 * 10 9 7 33 33 H 1.09006 * 109.58879 * 113.84066 * 10 9 7 34 34 H 1.09007 * 109.56573 * 185.55521 * 11 10 9 35 35 H 1.09002 * 109.36461 * 65.49364 * 11 10 9 36 36 H 0.97006 * 119.99898 * 95.07186 * 14 12 11 37 37 H 1.08004 * 119.43919 * 0.02562 * 18 17 15 38 38 H 1.07994 * 126.02482 * 0.05953 * 21 20 19 39 39 H 1.08004 * 125.13783 * 180.02562 * 22 21 20 40 40 H 1.07997 * 120.91271 * 0.02562 * 26 25 23 41 41 H 0.96702 * 113.99942 * 179.83960 * 29 27 12 42 42 H 1.09004 * 109.58525 * 246.16048 * 30 9 7 43 43 H 1.08995 * 109.58430 * 6.43945 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7464 0.0006 5 1 3.1038 1.6964 1.2125 6 1 3.1038 1.6964 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0539 -1.2230 -0.2776 9 7 1.3717 -2.3616 0.3503 10 6 0.2275 -2.3368 1.2716 11 6 0.4938 -3.3061 2.4218 12 6 0.8147 -4.6910 1.8549 13 1 0.9832 -5.3888 2.6752 14 7 -0.3098 -5.1576 1.0402 15 6 -1.3531 -5.7794 1.6246 16 8 -1.3611 -5.9526 2.8280 17 6 -2.4857 -6.2499 0.8038 18 6 -2.4869 -6.0490 -0.5826 19 7 -3.4833 -6.4654 -1.3271 20 6 -4.5397 -7.0859 -0.7999 21 6 -5.7288 -7.6214 -1.3580 22 6 -6.4599 -8.1403 -0.3558 23 7 -5.8039 -7.9691 0.8294 24 1 -6.1239 -8.2574 1.6985 25 6 -4.6123 -7.3194 0.5880 26 6 -3.5718 -6.8966 1.4023 27 6 2.0734 -4.6099 0.9881 28 1 2.9048 -4.2393 1.5876 29 8 2.3898 -5.9091 0.4841 30 6 1.8216 -3.6548 -0.1828 31 1 -0.4850 0.8400 0.0004 32 1 0.0986 -1.3293 1.6671 33 1 -0.6750 -2.6418 0.7418 34 1 -0.3892 -3.3692 3.0579 35 1 1.3401 -2.9478 3.0078 36 1 -0.3036 -5.0191 0.0801 37 1 -1.6511 -5.5467 -1.0470 38 1 -5.9991 -7.6143 -2.4035 39 1 -7.4204 -8.6206 -0.4711 40 1 -3.5998 -7.0619 2.4691 41 1 3.1770 -5.9323 -0.0771 42 1 1.0518 -4.0695 -0.8336 43 1 2.7427 -3.5162 -0.7487 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090353619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:45 Heat of formation + Delta-G solvation = 16.181535 kcal Electronic energy + Delta-G solvation = -28303.883373 eV Core-core repulsion = 24350.472942 eV Total energy + Delta-G solvation = -3953.410431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.88343 -39.93846 -38.24653 -37.32604 -35.43600 -34.09362 -32.98560 -31.83151 -30.49432 -30.29240 -29.36966 -28.43042 -25.41662 -24.03654 -23.63654 -22.29342 -21.86068 -21.06466 -20.72603 -18.91263 -18.50696 -17.48029 -17.05463 -16.68052 -16.36729 -16.03248 -15.30371 -15.03724 -14.91017 -14.54859 -14.43577 -14.11466 -13.79654 -13.58390 -13.42670 -13.27690 -13.00749 -12.74320 -12.56974 -12.52881 -12.26073 -11.98047 -11.66477 -11.17666 -10.87207 -10.66828 -10.45415 -10.40810 -10.20485 -10.05296 -9.93966 -9.78407 -9.43066 -9.27895 -8.71854 -8.57752 -8.50387 -8.27994 -6.77158 -5.85709 -3.30033 0.52517 1.20387 2.29440 2.68755 3.18906 3.35011 3.41683 3.42006 3.46867 3.97972 4.12272 4.37028 4.50056 4.53423 4.75800 4.86152 4.88916 5.05364 5.20232 5.28869 5.32272 5.45019 5.48265 5.58289 5.70309 5.76691 5.94254 5.99258 6.06216 6.17152 6.24162 6.25725 6.45259 6.54328 6.64928 6.69610 6.71225 6.91839 7.09736 7.28169 7.59744 7.72247 7.82563 7.92525 7.94016 8.36410 8.48445 9.12111 9.74535 10.29635 11.22375 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015728 B = 0.003155 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.875422 B = 8872.027035 C = 9655.634788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.007 3.993 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.261 4.261 8 H 0.066 0.934 9 N -0.586 5.586 10 C 0.171 3.829 11 C -0.154 4.154 12 C 0.166 3.834 13 H 0.081 0.919 14 N -0.696 5.696 15 C 0.567 3.433 16 O -0.549 6.549 17 C -0.169 4.169 18 C 0.138 3.862 19 N -0.454 5.454 20 C 0.112 3.888 21 C -0.198 4.198 22 C 0.075 3.925 23 N -0.582 5.582 24 H 0.421 0.579 25 C 0.023 3.977 26 C -0.016 4.016 27 C 0.075 3.925 28 H 0.068 0.932 29 O -0.571 6.571 30 C 0.118 3.882 31 H 0.256 0.744 32 H 0.090 0.910 33 H 0.022 0.978 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.402 0.598 37 H 0.162 0.838 38 H 0.154 0.846 39 H 0.180 0.820 40 H 0.144 0.856 41 H 0.374 0.626 42 H 0.022 0.978 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.025 -16.294 0.881 18.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.193 4.193 3 Si 0.734 3.266 4 H -0.216 1.216 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.390 4.390 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.045 3.955 11 C -0.194 4.194 12 C 0.062 3.938 13 H 0.099 0.901 14 N -0.347 5.347 15 C 0.353 3.647 16 O -0.429 6.429 17 C -0.175 4.175 18 C -0.032 4.032 19 N -0.162 5.162 20 C -0.019 4.019 21 C -0.224 4.224 22 C -0.055 4.055 23 N -0.185 5.185 24 H 0.259 0.741 25 C -0.086 4.086 26 C -0.045 4.045 27 C 0.014 3.986 28 H 0.085 0.915 29 O -0.375 6.375 30 C -0.010 4.010 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.040 0.960 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.239 0.761 37 H 0.179 0.821 38 H 0.171 0.829 39 H 0.197 0.803 40 H 0.162 0.838 41 H 0.221 0.779 42 H 0.040 0.960 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.758 -16.348 1.245 19.080 hybrid contribution 0.714 0.921 0.489 1.264 sum -9.044 -15.427 1.734 17.966 Atomic orbital electron populations 1.70019 1.05267 1.25840 1.52982 1.25044 0.95278 0.98478 1.00454 0.86355 0.78923 0.83234 0.78137 1.21593 1.20974 1.20843 1.19103 0.92644 0.84646 1.42615 0.91615 1.43984 1.35876 1.00864 1.50320 1.20714 0.88555 0.98431 0.87779 1.22530 1.01592 0.94710 1.00539 1.20872 0.83613 0.96495 0.92828 0.90136 1.45837 1.19346 1.57741 1.11747 1.17787 0.81993 0.77755 0.87141 1.90737 1.79772 1.58023 1.14335 1.20669 0.96809 1.04756 0.95304 1.22828 0.95987 0.95225 0.89181 1.67209 1.00076 1.09776 1.39089 1.19212 0.94664 0.98664 0.89384 1.20592 0.94219 1.07588 0.99985 1.22032 0.98513 1.01255 0.83719 1.41721 1.16408 1.50733 1.09628 0.74100 1.19007 0.90035 1.02905 0.96603 1.20505 0.89710 0.94311 0.99949 1.22752 0.96069 0.83037 0.96724 0.91459 1.86485 1.50481 1.30187 1.70337 1.21544 0.98566 0.87712 0.93152 0.93428 0.89208 0.96007 0.91758 0.91396 0.76068 0.82134 0.82874 0.80293 0.83801 0.77933 0.95990 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.30 11.19 55.49 0.62 -24.68 16 2 C 0.01 0.18 4.91 -17.43 -0.09 0.10 16 3 Si 0.90 21.10 29.59 -169.99 -5.03 16.07 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.26 -6.80 9.58 -15.06 -0.14 -6.95 16 8 H 0.07 1.67 7.89 -52.49 -0.41 1.26 16 9 N -0.59 -13.73 3.00 -172.58 -0.52 -14.25 16 10 C 0.17 3.92 5.03 -3.94 -0.02 3.90 16 11 C -0.15 -2.98 5.75 -26.83 -0.15 -3.14 16 12 C 0.17 2.96 2.47 -67.89 -0.17 2.79 16 13 H 0.08 1.48 7.58 -51.93 -0.39 1.09 16 14 N -0.70 -11.82 4.11 -54.79 -0.23 -12.04 16 15 C 0.57 9.84 7.73 -12.45 -0.10 9.74 16 16 O -0.55 -10.81 16.06 5.28 0.08 -10.73 16 17 C -0.17 -2.58 5.89 -104.79 -0.62 -3.20 16 18 C 0.14 2.07 10.69 -17.14 -0.18 1.89 16 19 N -0.45 -7.05 10.40 -10.70 -0.11 -7.16 16 20 C 0.11 1.54 7.32 -84.80 -0.62 0.92 16 21 C -0.20 -2.02 10.84 -39.53 -0.43 -2.45 16 22 C 0.08 0.53 11.82 -16.79 -0.20 0.33 16 23 N -0.58 -4.68 6.14 -10.66 -0.07 -4.75 16 24 H 0.42 2.00 8.96 -40.82 -0.37 1.64 16 25 C 0.02 0.29 7.27 -83.96 -0.61 -0.32 16 26 C -0.02 -0.21 9.72 -38.79 -0.38 -0.59 16 27 C 0.08 1.25 3.36 -26.61 -0.09 1.16 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 O -0.57 -8.38 13.21 -35.23 -0.47 -8.85 16 30 C 0.12 2.24 5.85 -3.71 -0.02 2.21 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.09 2.35 6.04 -51.93 -0.31 2.03 16 33 H 0.02 0.53 7.74 -51.93 -0.40 0.13 16 34 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.40 6.54 4.90 -40.82 -0.20 6.34 16 37 H 0.16 2.21 6.39 -52.48 -0.34 1.87 16 38 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.18 0.46 8.06 -52.48 -0.42 0.04 16 40 H 0.14 1.78 7.72 -52.49 -0.41 1.37 16 41 H 0.37 3.91 9.08 45.56 0.41 4.32 16 42 H 0.02 0.42 6.64 -51.93 -0.34 0.08 16 43 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 LS Contribution 352.97 15.07 5.32 5.32 Total: -1.00 -33.95 352.97 -8.62 -42.57 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -4.42 Total: 12.10 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: -3.81 Total: 6.40 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: -0.30 Total: -62.88 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.38 Total: -19.58 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.95 -8.62 -42.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090353619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.753 kcal (2) G-P(sol) polarization free energy of solvation -33.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds