Wall clock time and date at job start Tue Mar 31 2020 04:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99816 * 2 1 4 4 H 1.48498 * 109.47054 * 272.94202 * 3 2 1 5 5 H 1.48500 * 109.47097 * 32.94798 * 3 2 1 6 6 H 1.48500 * 109.47061 * 152.94242 * 3 2 1 7 7 C 1.38807 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00191 * 339.34728 * 7 2 1 9 9 N 1.36945 * 119.99908 * 159.34485 * 7 2 1 10 10 C 1.46929 * 120.62844 * 152.60944 * 9 7 2 11 11 C 1.53185 * 108.76335 * 126.40943 * 10 9 7 12 12 C 1.53034 * 109.31705 * 54.65041 * 11 10 9 13 13 H 1.09001 * 109.46060 * 58.62668 * 12 11 10 14 14 N 1.46496 * 109.46274 * 178.60158 * 12 11 10 15 15 C 1.34778 * 119.99997 * 275.03075 * 14 12 11 16 16 O 1.21592 * 120.00078 * 359.97438 * 15 14 12 17 17 C 1.47583 * 120.00121 * 179.97438 * 15 14 12 18 18 C 1.40084 * 120.35995 * 359.97438 * 17 15 14 19 19 N 1.31157 * 121.12526 * 179.97438 * 18 17 15 20 20 C 1.33367 * 121.67314 * 359.97438 * 19 18 17 21 21 C 1.41854 * 133.16794 * 179.97438 * 20 19 18 22 22 C 1.34461 * 107.95766 * 180.02562 * 21 20 19 23 23 N 1.36534 * 109.71353 * 0.02562 * 22 21 20 24 24 H 0.97009 * 125.59425 * 180.26405 * 23 22 21 25 25 C 1.37855 * 108.80857 * 359.97438 * 23 22 21 26 26 C 1.38733 * 133.57046 * 179.97438 * 25 23 22 27 27 C 1.53039 * 109.52839 * 298.61460 * 12 11 10 28 28 H 1.08993 * 109.49914 * 301.42345 * 27 12 11 29 29 O 1.42904 * 109.49754 * 181.31765 * 27 12 11 30 30 C 1.46918 * 120.62783 * 332.63310 * 9 7 2 31 31 H 0.96999 * 119.99628 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.58004 * 246.20274 * 10 9 7 33 33 H 1.08998 * 109.58832 * 6.48184 * 10 9 7 34 34 H 1.09009 * 109.50834 * 294.69117 * 11 10 9 35 35 H 1.08999 * 109.48417 * 174.60174 * 11 10 9 36 36 H 0.97001 * 120.00450 * 95.02811 * 14 12 11 37 37 H 1.08000 * 119.43735 * 359.95888 * 18 17 15 38 38 H 1.08000 * 126.01992 * 0.02562 * 21 20 19 39 39 H 1.07996 * 125.13961 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.90957 * 0.02562 * 26 25 23 41 41 H 0.96703 * 113.99496 * 179.97438 * 29 27 12 42 42 H 1.09001 * 109.58931 * 113.80271 * 30 9 7 43 43 H 1.08995 * 109.70955 * 353.43824 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4354 2.0824 -1.3982 5 1 1.4802 2.6339 0.7615 6 1 3.5775 1.4231 0.6369 7 6 2.0103 -1.2021 0.0005 8 1 1.5224 -2.1072 0.3308 9 7 3.3137 -1.2404 -0.4178 10 6 4.2351 -2.2629 0.0962 11 6 4.8750 -2.9907 -1.0901 12 6 5.5290 -1.9659 -2.0197 13 1 6.2780 -1.3995 -1.4662 14 7 6.1708 -2.6610 -3.1381 15 6 7.4215 -3.1448 -3.0024 16 8 8.0172 -3.0038 -1.9518 17 6 8.0679 -3.8456 -4.1289 18 6 7.3883 -4.0127 -5.3425 19 7 7.9486 -4.6326 -6.3535 20 6 9.1839 -5.1288 -6.2731 21 6 10.0107 -5.8274 -7.1900 22 6 11.1772 -6.0938 -6.5766 23 7 11.1504 -5.6027 -5.3029 24 1 11.8732 -5.6641 -4.6587 25 6 9.9302 -4.9995 -5.0846 26 6 9.3658 -4.3494 -3.9967 27 6 4.4622 -1.0098 -2.5583 28 1 3.6996 -1.5783 -3.0906 29 8 5.0686 -0.0722 -3.4502 30 6 3.8173 -0.2595 -1.3887 31 1 -0.4849 0.8401 0.0004 32 1 5.0115 -1.7871 0.6953 33 1 3.6846 -2.9752 0.7108 34 1 4.1085 -3.5404 -1.6365 35 1 5.6313 -3.6857 -0.7253 36 1 5.6958 -2.7732 -3.9764 37 1 6.3859 -3.6247 -5.4473 38 1 9.7493 -6.0976 -8.2024 39 1 12.0091 -6.6177 -7.0235 40 1 9.9137 -4.2356 -3.0731 41 1 4.4494 0.5658 -3.8305 42 1 4.5598 0.3797 -0.9108 43 1 2.9924 0.3506 -1.7565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090353622.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:48 Heat of formation + Delta-G solvation = 18.916248 kcal Electronic energy + Delta-G solvation = -27784.619677 eV Core-core repulsion = 23831.327832 eV Total energy + Delta-G solvation = -3953.291845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.07684 -40.04512 -38.45287 -37.57245 -35.52159 -34.56770 -33.18991 -32.26710 -30.64532 -30.47265 -29.60800 -28.94402 -25.43967 -23.97695 -23.79616 -22.96539 -21.69989 -21.24430 -20.56436 -19.80926 -18.74048 -17.63001 -17.04025 -16.94277 -16.69425 -16.35564 -15.75773 -15.45840 -14.90587 -14.68209 -14.47059 -14.35551 -13.88011 -13.71814 -13.59980 -13.38669 -13.21285 -12.89142 -12.79134 -12.74568 -12.46351 -12.36141 -12.14636 -11.40994 -11.03050 -10.90675 -10.65100 -10.53206 -10.38164 -10.30483 -9.82839 -9.67181 -9.57133 -9.46350 -8.94457 -8.79098 -8.69640 -8.47574 -7.09199 -6.02702 -3.40006 0.31990 0.98819 2.11372 2.50933 2.96466 3.20059 3.23735 3.44335 3.47798 3.75900 3.91082 4.29117 4.34138 4.45446 4.55950 4.64589 4.66524 4.86071 4.89208 5.00688 5.17532 5.25762 5.29526 5.42914 5.57799 5.59988 5.74688 5.75500 5.79623 5.97240 6.00555 6.05867 6.22785 6.25972 6.38252 6.49083 6.50717 6.55993 6.65537 6.80632 6.92184 7.56436 7.71297 7.78104 7.93928 8.24688 8.25154 8.84147 9.62685 9.98543 11.12823 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.031224 B = 0.002503 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.534929 B =11182.477631 C =11376.981364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.024 3.976 3 Si 0.881 3.119 4 H -0.289 1.289 5 H -0.301 1.301 6 H -0.269 1.269 7 C -0.263 4.263 8 H 0.089 0.911 9 N -0.602 5.602 10 C 0.148 3.852 11 C -0.142 4.142 12 C 0.162 3.838 13 H 0.091 0.909 14 N -0.707 5.707 15 C 0.566 3.434 16 O -0.541 6.541 17 C -0.172 4.172 18 C 0.134 3.866 19 N -0.455 5.455 20 C 0.112 3.888 21 C -0.199 4.199 22 C 0.078 3.922 23 N -0.581 5.581 24 H 0.422 0.578 25 C 0.024 3.976 26 C -0.014 4.014 27 C 0.079 3.921 28 H 0.065 0.935 29 O -0.571 6.571 30 C 0.102 3.898 31 H 0.264 0.736 32 H 0.029 0.971 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.399 0.601 37 H 0.161 0.839 38 H 0.154 0.846 39 H 0.181 0.819 40 H 0.145 0.855 41 H 0.378 0.622 42 H 0.036 0.964 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.329 -11.033 -13.580 27.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.175 4.175 3 Si 0.711 3.289 4 H -0.217 1.217 5 H -0.230 1.230 6 H -0.194 1.194 7 C -0.391 4.391 8 H 0.107 0.893 9 N -0.327 5.327 10 C 0.022 3.978 11 C -0.182 4.182 12 C 0.058 3.942 13 H 0.109 0.891 14 N -0.357 5.357 15 C 0.352 3.648 16 O -0.419 6.419 17 C -0.179 4.179 18 C -0.036 4.036 19 N -0.162 5.162 20 C -0.019 4.019 21 C -0.225 4.225 22 C -0.053 4.053 23 N -0.184 5.184 24 H 0.260 0.740 25 C -0.085 4.085 26 C -0.043 4.043 27 C 0.018 3.982 28 H 0.082 0.918 29 O -0.375 6.375 30 C -0.025 4.025 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.234 0.766 37 H 0.178 0.822 38 H 0.172 0.828 39 H 0.198 0.802 40 H 0.163 0.837 41 H 0.225 0.775 42 H 0.054 0.946 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 21.810 -11.331 -13.380 27.984 hybrid contribution 0.425 1.369 0.492 1.516 sum 22.235 -9.962 -12.888 27.564 Atomic orbital electron populations 1.69836 1.05700 1.26669 1.52525 1.25304 0.95259 0.97593 0.99389 0.86991 0.80179 0.84652 0.77036 1.21708 1.22950 1.19438 1.18934 0.84724 0.94942 1.40465 0.89348 1.44336 1.08873 1.33380 1.46093 1.20966 0.92445 0.91359 0.93039 1.22432 0.99807 0.97913 0.98038 1.20998 0.94228 0.92074 0.86853 0.89104 1.45942 1.15163 1.57385 1.17179 1.17836 0.81463 0.78612 0.86860 1.90777 1.64005 1.58455 1.28708 1.20663 0.95780 1.04878 0.96554 1.22786 0.99335 0.94284 0.87213 1.67191 1.09506 1.09215 1.30329 1.19202 0.90796 0.99245 0.92659 1.20600 0.93310 1.07568 1.00974 1.22070 0.99761 0.99517 0.83910 1.41757 1.13868 1.49030 1.13716 0.73963 1.19011 0.88539 1.03048 0.97886 1.20543 0.93698 0.93258 0.96785 1.22797 0.93544 0.90257 0.91599 0.91753 1.86445 1.39884 1.47600 1.63604 1.22024 0.97782 0.92779 0.89927 0.92649 0.95345 0.91080 0.91360 0.91273 0.76624 0.82165 0.82806 0.80174 0.83696 0.77531 0.94585 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.97 55.49 0.78 -26.21 16 2 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 3 Si 0.88 21.79 24.35 -169.99 -4.14 17.65 16 4 H -0.29 -6.76 6.62 56.52 0.37 -6.39 16 5 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.27 -6.66 6.64 56.52 0.38 -6.28 16 7 C -0.26 -7.08 10.03 -15.06 -0.15 -7.23 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 9 N -0.60 -13.79 2.77 -172.32 -0.48 -14.26 16 10 C 0.15 2.88 6.52 -3.71 -0.02 2.85 16 11 C -0.14 -2.36 5.65 -26.62 -0.15 -2.51 16 12 C 0.16 2.69 2.12 -67.90 -0.14 2.55 16 13 H 0.09 1.71 7.58 -51.93 -0.39 1.31 16 14 N -0.71 -9.92 4.87 -54.80 -0.27 -10.18 16 15 C 0.57 8.40 7.73 -12.45 -0.10 8.30 16 16 O -0.54 -9.70 16.06 5.28 0.08 -9.61 16 17 C -0.17 -2.16 5.89 -104.79 -0.62 -2.78 16 18 C 0.13 1.57 10.69 -17.15 -0.18 1.39 16 19 N -0.45 -5.78 10.40 -10.70 -0.11 -5.89 16 20 C 0.11 1.28 7.32 -84.80 -0.62 0.66 16 21 C -0.20 -1.64 10.84 -39.53 -0.43 -2.07 16 22 C 0.08 0.42 11.82 -16.79 -0.20 0.22 16 23 N -0.58 -3.67 6.14 -10.66 -0.07 -3.74 16 24 H 0.42 1.35 8.96 -40.82 -0.37 0.99 16 25 C 0.02 0.25 7.27 -83.96 -0.61 -0.36 16 26 C -0.01 -0.16 9.72 -38.79 -0.38 -0.54 16 27 C 0.08 1.35 3.14 -26.61 -0.08 1.27 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 29 O -0.57 -8.82 13.16 -35.23 -0.46 -9.28 16 30 C 0.10 2.13 3.83 -3.71 -0.01 2.12 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 1.35 7.93 -51.93 -0.41 0.94 16 34 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.40 4.64 6.64 -40.82 -0.27 4.37 16 37 H 0.16 1.50 6.39 -52.49 -0.34 1.17 16 38 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 39 H 0.18 0.18 8.06 -52.49 -0.42 -0.24 16 40 H 0.15 1.52 7.72 -52.49 -0.41 1.12 16 41 H 0.38 4.56 9.08 45.56 0.41 4.98 16 42 H 0.04 0.78 7.08 -51.93 -0.37 0.41 16 43 H 0.08 1.76 4.50 -51.93 -0.23 1.52 16 LS Contribution 350.80 15.07 5.29 5.29 Total: -1.00 -35.45 350.80 -7.68 -43.14 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -4.52 Total: 8.67 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -3.79 Total: 4.44 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: -0.15 Total: -60.29 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.38 Total: -18.90 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.14 Total: 17.65 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.45 -7.68 -43.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090353622.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.055 kcal (2) G-P(sol) polarization free energy of solvation -35.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds