Wall clock time and date at job start Tue Mar 31 2020 04:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00041 * 2 1 4 4 H 1.48498 * 109.47371 * 240.00453 * 3 2 1 5 5 H 1.48503 * 109.46722 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47203 * 119.99820 * 3 2 1 7 7 C 1.38810 * 120.00470 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00246 * 197.35376 * 7 2 1 9 9 N 1.36945 * 119.99610 * 17.35758 * 7 2 1 10 10 C 1.46919 * 120.63468 * 27.68228 * 9 7 2 11 11 C 1.53185 * 108.77820 * 126.39383 * 10 9 7 12 12 C 1.53034 * 109.31303 * 54.63285 * 11 10 9 13 13 H 1.09008 * 109.45806 * 58.65997 * 12 11 10 14 14 N 1.46506 * 109.46313 * 178.61281 * 12 11 10 15 15 C 1.34768 * 120.00219 * 275.07695 * 14 12 11 16 16 O 1.21645 * 120.00088 * 359.97438 * 15 14 12 17 17 C 1.47073 * 120.00197 * 179.97438 * 15 14 12 18 18 C 1.35899 * 125.42763 * 180.02562 * 17 15 14 19 19 C 1.41425 * 107.67528 * 179.97438 * 18 17 15 20 20 C 1.39848 * 134.34926 * 180.02562 * 19 18 17 21 21 N 1.31556 * 120.03843 * 179.97438 * 20 19 18 22 22 C 1.32365 * 122.32785 * 359.97438 * 21 20 19 23 23 C 1.36646 * 121.63806 * 0.02562 * 22 21 20 24 24 C 1.39429 * 119.01503 * 359.97438 * 23 22 21 25 25 N 1.36878 * 134.32510 * 180.36438 * 24 23 22 26 26 H 0.96999 * 125.58910 * 359.94041 * 25 24 23 27 27 C 1.53035 * 109.54135 * 298.63673 * 12 11 10 28 28 H 1.09003 * 109.52640 * 301.39757 * 27 12 11 29 29 O 1.42905 * 109.50019 * 181.31216 * 27 12 11 30 30 C 1.46922 * 120.62614 * 207.68721 * 9 7 2 31 31 H 0.97000 * 120.00650 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.58423 * 6.60284 * 10 9 7 33 33 H 1.09000 * 109.70410 * 246.25734 * 10 9 7 34 34 H 1.09006 * 109.49574 * 294.68406 * 11 10 9 35 35 H 1.09000 * 109.50117 * 174.58685 * 11 10 9 36 36 H 0.97000 * 119.99153 * 95.06892 * 14 12 11 37 37 H 1.08005 * 126.15797 * 0.02562 * 18 17 15 38 38 H 1.07994 * 119.97952 * 359.97438 * 20 19 18 39 39 H 1.07991 * 119.18335 * 180.02562 * 22 21 20 40 40 H 1.08009 * 120.48845 * 179.97438 * 23 22 21 41 41 H 0.96702 * 113.99941 * 180.16283 * 29 27 12 42 42 H 1.09001 * 109.59334 * 113.82024 * 30 9 7 43 43 H 1.09001 * 109.58920 * 353.39074 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0534 -1.2234 0.2784 9 7 1.3723 -2.3609 -0.3549 10 6 0.2279 -2.3340 -1.2758 11 6 0.5010 -3.3033 -2.4301 12 6 0.8191 -4.6887 -1.8632 13 1 -0.0201 -5.0357 -1.2602 14 7 1.0483 -5.6263 -2.9654 15 6 0.0047 -6.2460 -3.5510 16 8 -1.1277 -6.0273 -3.1642 17 6 0.2348 -7.1868 -4.6578 18 6 -0.7323 -7.8694 -5.3255 19 6 -0.0970 -8.6610 -6.3103 20 6 -0.5480 -9.5566 -7.2851 21 7 0.3139 -10.1564 -8.0776 22 6 1.6181 -9.9462 -7.9933 23 6 2.1477 -9.0881 -7.0711 24 6 1.2898 -8.4187 -6.1993 25 7 1.4690 -7.5125 -5.1892 26 1 2.3222 -7.1586 -4.8931 27 6 2.0747 -4.6093 -0.9919 28 1 2.9089 -4.2391 -1.5879 29 8 2.3885 -5.9091 -0.4878 30 6 1.8194 -3.6547 0.1788 31 1 -0.4851 0.8400 0.0004 32 1 0.0985 -1.3254 -1.6684 33 1 -0.6756 -2.6394 -0.7482 34 1 1.3496 -2.9451 -3.0130 35 1 -0.3797 -3.3652 -3.0694 36 1 1.9514 -5.8008 -3.2736 37 1 -1.7946 -7.8162 -5.1382 38 1 -1.6044 -9.7560 -7.3874 39 1 2.2800 -10.4657 -8.6702 40 1 3.2149 -8.9308 -7.0184 41 1 3.1736 -5.9332 0.0762 42 1 1.0471 -4.0694 0.8266 43 1 2.7401 -3.5176 0.7460 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090361496.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:54 Heat of formation + Delta-G solvation = 9.199630 kcal Electronic energy + Delta-G solvation = -27628.211310 eV Core-core repulsion = 23674.498121 eV Total energy + Delta-G solvation = -3953.713189 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.11390 -39.86897 -38.42667 -37.71980 -35.52124 -34.57635 -32.70040 -32.15664 -31.06078 -30.13395 -29.46909 -28.61841 -25.71007 -24.35804 -23.13770 -22.55743 -22.16322 -21.40513 -20.34396 -19.77331 -18.82832 -17.80368 -17.16146 -16.70496 -16.16825 -15.84834 -15.59304 -15.52672 -14.95739 -14.68293 -14.46263 -14.38250 -14.07878 -13.87316 -13.77704 -13.40463 -13.28451 -13.00427 -12.82325 -12.40140 -12.18448 -11.80572 -11.68450 -11.19562 -10.92934 -10.81521 -10.45761 -10.40682 -10.36382 -10.22993 -10.00473 -9.87003 -9.83286 -9.60200 -9.16851 -8.96659 -8.55163 -8.24914 -6.86040 -5.91954 -3.36519 0.35678 1.22850 1.81314 2.47446 3.03316 3.22814 3.30172 3.36609 3.37257 3.64503 4.21172 4.22875 4.27111 4.41297 4.56682 4.64187 4.79191 4.99344 5.11659 5.16788 5.24343 5.37684 5.40529 5.44095 5.54304 5.64127 5.70737 5.83558 5.97384 6.03041 6.11780 6.23529 6.36720 6.38350 6.48807 6.55762 6.65742 6.68284 6.90668 7.19111 7.44464 7.52973 7.65464 7.78484 7.79156 8.10462 8.30022 9.05517 9.67796 10.23143 11.16659 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.024182 B = 0.002401 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.616583 B =11661.381287 C =11785.413492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.006 3.994 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.263 4.263 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.147 4.147 12 C 0.163 3.837 13 H 0.092 0.908 14 N -0.711 5.711 15 C 0.579 3.421 16 O -0.517 6.517 17 C 0.026 3.974 18 C -0.094 4.094 19 C -0.174 4.174 20 C 0.177 3.823 21 N -0.508 5.508 22 C 0.103 3.897 23 C -0.181 4.181 24 C 0.138 3.862 25 N -0.569 5.569 26 H 0.421 0.579 27 C 0.079 3.921 28 H 0.056 0.944 29 O -0.572 6.572 30 C 0.121 3.879 31 H 0.257 0.743 32 H 0.095 0.905 33 H 0.026 0.974 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.391 0.609 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.157 0.843 40 H 0.133 0.867 41 H 0.375 0.625 42 H 0.030 0.970 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.364 -16.898 -12.054 21.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.193 4.193 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.392 4.392 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.044 3.956 11 C -0.188 4.188 12 C 0.060 3.940 13 H 0.111 0.889 14 N -0.360 5.360 15 C 0.364 3.636 16 O -0.392 6.392 17 C -0.083 4.083 18 C -0.122 4.122 19 C -0.181 4.181 20 C 0.009 3.991 21 N -0.218 5.218 22 C -0.045 4.045 23 C -0.204 4.204 24 C 0.020 3.980 25 N -0.174 5.174 26 H 0.259 0.741 27 C 0.018 3.982 28 H 0.074 0.926 29 O -0.377 6.377 30 C -0.007 4.007 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.224 0.776 37 H 0.181 0.819 38 H 0.179 0.821 39 H 0.174 0.826 40 H 0.150 0.850 41 H 0.222 0.778 42 H 0.048 0.952 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.779 -17.214 -12.626 21.680 hybrid contribution 2.304 1.765 1.017 3.076 sum 6.084 -15.448 -11.609 20.259 Atomic orbital electron populations 1.70014 1.05302 1.25999 1.52817 1.25075 0.95307 0.98578 1.00345 0.86340 0.78930 0.83140 0.78151 1.20955 1.21489 1.20785 1.19104 0.92695 0.84641 1.42768 0.91552 1.44041 1.35858 1.01017 1.50233 1.20838 0.88759 0.98445 0.87512 1.22627 1.01145 0.94046 1.00943 1.21117 0.97914 0.89179 0.85839 0.88949 1.46028 1.08506 1.45002 1.36435 1.17124 0.85555 0.79703 0.81188 1.90879 1.21938 1.63437 1.62993 1.20493 0.84608 1.03272 0.99939 1.20889 0.99608 0.96705 0.94986 1.19241 0.93015 1.03951 1.01887 1.22534 0.99613 0.89013 0.87893 1.67665 1.03451 1.25041 1.25614 1.22087 0.91628 0.94909 0.95873 1.20802 0.99906 1.01391 0.98287 1.18382 0.95307 0.92951 0.91317 1.41901 1.08428 1.37459 1.29568 0.74087 1.22795 0.95786 0.83226 0.96359 0.92606 1.86477 1.50921 1.30180 1.70073 1.21523 0.98928 0.87416 0.92819 0.93274 0.88727 0.95631 0.92315 0.91713 0.77642 0.81940 0.82080 0.82600 0.84950 0.77846 0.95176 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.26 11.19 55.49 0.62 -24.64 16 2 C 0.01 0.17 4.91 -17.43 -0.09 0.09 16 3 Si 0.91 20.83 29.59 -169.99 -5.03 15.80 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.26 -6.82 9.58 -15.06 -0.14 -6.97 16 8 H 0.07 1.67 7.89 -52.49 -0.41 1.26 16 9 N -0.59 -13.87 2.99 -172.32 -0.52 -14.38 16 10 C 0.17 3.93 5.31 -3.72 -0.02 3.91 16 11 C -0.15 -2.75 5.65 -26.62 -0.15 -2.90 16 12 C 0.16 2.75 2.12 -67.89 -0.14 2.61 16 13 H 0.09 1.81 7.58 -51.92 -0.39 1.42 16 14 N -0.71 -9.78 4.91 -54.95 -0.27 -10.05 16 15 C 0.58 8.61 7.76 -12.68 -0.10 8.51 16 16 O -0.52 -9.59 16.50 5.24 0.09 -9.50 16 17 C 0.03 0.32 6.97 -82.22 -0.57 -0.26 16 18 C -0.09 -1.09 10.53 -39.21 -0.41 -1.50 16 19 C -0.17 -1.87 6.21 -106.95 -0.66 -2.54 16 20 C 0.18 1.73 11.29 -17.07 -0.19 1.53 16 21 N -0.51 -5.29 10.33 -13.18 -0.14 -5.42 16 22 C 0.10 0.88 11.09 -17.90 -0.20 0.68 16 23 C -0.18 -1.49 10.09 -39.71 -0.40 -1.89 16 24 C 0.14 1.39 7.32 -84.04 -0.62 0.78 16 25 N -0.57 -5.38 6.05 -7.31 -0.04 -5.42 16 26 H 0.42 2.84 8.12 -40.82 -0.33 2.51 16 27 C 0.08 1.26 3.14 -26.61 -0.08 1.17 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 O -0.57 -7.89 13.16 -35.23 -0.46 -8.36 16 30 C 0.12 2.34 6.14 -3.71 -0.02 2.32 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.09 2.44 6.04 -51.93 -0.31 2.12 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.39 4.22 7.66 -40.82 -0.31 3.91 16 37 H 0.16 1.72 8.06 -52.48 -0.42 1.29 16 38 H 0.16 1.14 8.06 -52.49 -0.42 0.71 16 39 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 41 H 0.37 3.62 9.08 45.56 0.41 4.04 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 LS Contribution 359.71 15.07 5.42 5.42 Total: -1.00 -32.87 359.71 -8.84 -41.71 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -4.70 Total: 9.30 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -3.81 Total: 5.55 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -0.35 Total: -59.92 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.38 Total: -17.85 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.80 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.87 -8.84 -41.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090361496.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.907 kcal (2) G-P(sol) polarization free energy of solvation -32.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds