Wall clock time and date at job start Tue Mar 31 2020 04:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00147 * 2 1 4 4 H 1.48501 * 109.47294 * 272.93185 * 3 2 1 5 5 H 1.48497 * 109.46818 * 32.93209 * 3 2 1 6 6 H 1.48501 * 109.46988 * 152.93058 * 3 2 1 7 7 C 1.38816 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99852 * 339.35812 * 7 2 1 9 9 N 1.36929 * 120.00104 * 159.35938 * 7 2 1 10 10 C 1.46929 * 120.63265 * 152.63558 * 9 7 2 11 11 C 1.53192 * 108.77547 * 126.36757 * 10 9 7 12 12 C 1.53050 * 109.31137 * 54.64025 * 11 10 9 13 13 H 1.08995 * 109.44846 * 178.62178 * 12 11 10 14 14 N 1.46504 * 109.45856 * 58.65546 * 12 11 10 15 15 C 1.34772 * 120.00075 * 84.93091 * 14 12 11 16 16 O 1.21612 * 120.00176 * 359.97438 * 15 14 12 17 17 C 1.47376 * 119.99614 * 179.97438 * 15 14 12 18 18 C 1.39248 * 120.84284 * 0.02562 * 17 15 14 19 19 N 1.31911 * 120.97546 * 179.97438 * 18 17 15 20 20 C 1.31914 * 122.71788 * 359.97438 * 19 18 17 21 21 C 1.38694 * 120.79693 * 0.02562 * 20 19 18 22 22 N 1.37745 * 134.30947 * 179.97438 * 21 20 19 23 23 H 0.97006 * 125.55933 * 0.03156 * 22 21 20 24 24 C 1.36559 * 108.88280 * 180.02562 * 22 21 20 25 25 C 1.34643 * 109.66089 * 0.02562 * 24 22 21 26 26 C 1.40991 * 118.83837 * 359.75086 * 21 20 19 27 27 C 1.53041 * 109.53556 * 298.63652 * 12 11 10 28 28 H 1.09008 * 109.52026 * 301.39315 * 27 12 11 29 29 O 1.42903 * 109.49642 * 181.31814 * 27 12 11 30 30 C 1.46934 * 120.63537 * 332.61773 * 9 7 2 31 31 H 0.97002 * 119.99720 * 0.02562 * 1 2 3 32 32 H 1.09005 * 109.58223 * 6.58724 * 10 9 7 33 33 H 1.08996 * 109.70625 * 246.22823 * 10 9 7 34 34 H 1.09003 * 109.50060 * 294.68916 * 11 10 9 35 35 H 1.09003 * 109.49931 * 174.58489 * 11 10 9 36 36 H 0.97005 * 119.99615 * 264.93322 * 14 12 11 37 37 H 1.08003 * 119.50949 * 359.95406 * 18 17 15 38 38 H 1.08000 * 119.60616 * 179.97438 * 20 19 18 39 39 H 1.07998 * 125.17127 * 180.02562 * 24 22 21 40 40 H 1.08005 * 126.08630 * 180.02562 * 25 24 22 41 41 H 0.96694 * 113.99989 * 180.16189 * 29 27 12 42 42 H 1.08997 * 109.58684 * 113.84197 * 30 9 7 43 43 H 1.08998 * 109.57929 * 353.41581 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4357 2.0823 -1.3982 5 1 1.4800 2.6339 0.7611 6 1 3.5774 1.4230 0.6371 7 6 2.0103 -1.2022 -0.0005 8 1 1.5223 -2.1076 0.3288 9 7 3.3136 -1.2401 -0.4186 10 6 4.2349 -2.2634 0.0941 11 6 4.8744 -2.9904 -1.0930 12 6 5.5283 -1.9648 -2.0219 13 1 6.0052 -2.4816 -2.8547 14 7 6.5358 -1.2049 -1.2777 15 6 7.7854 -1.6920 -1.1455 16 8 8.0767 -2.7626 -1.6435 17 6 8.7990 -0.9272 -0.3973 18 6 8.4845 0.3001 0.1804 19 7 9.3895 0.9866 0.8510 20 6 10.6280 0.5632 1.0155 21 6 11.0419 -0.6470 0.4792 22 7 12.2311 -1.3420 0.4771 23 1 13.0541 -1.0533 0.9018 24 6 12.0627 -2.5039 -0.2204 25 6 10.7966 -2.5820 -0.6716 26 6 10.1132 -1.4238 -0.2432 27 6 4.4618 -1.0077 -2.5592 28 1 3.6987 -1.5749 -3.0923 29 8 5.0683 -0.0695 -3.4503 30 6 3.8176 -0.2583 -1.3887 31 1 -0.4850 0.8401 -0.0004 32 1 3.6837 -2.9776 0.7060 33 1 5.0119 -1.7907 0.6948 34 1 4.1074 -3.5393 -1.6395 35 1 5.6307 -3.6859 -0.7292 36 1 6.3034 -0.3511 -0.8802 37 1 7.4849 0.6959 0.0776 38 1 11.3284 1.1666 1.5739 39 1 12.8287 -3.2473 -0.3850 40 1 10.3772 -3.3896 -1.2534 41 1 4.4498 0.5709 -3.8276 42 1 4.5604 0.3800 -0.9103 43 1 2.9911 0.3505 -1.7552 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090394146.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:28 Heat of formation + Delta-G solvation = 23.173880 kcal Electronic energy + Delta-G solvation = -28762.066345 eV Core-core repulsion = 24808.959125 eV Total energy + Delta-G solvation = -3953.107220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.99425 -39.95794 -38.38525 -37.76794 -35.51815 -34.23254 -32.85774 -32.02964 -30.65047 -30.14684 -29.67069 -28.93995 -25.49650 -24.57670 -22.97765 -22.78287 -21.89487 -21.37578 -20.84352 -18.99688 -18.70592 -17.51251 -17.01993 -16.90539 -16.83455 -15.67778 -15.55462 -15.31685 -15.03666 -14.87745 -14.60536 -14.26935 -13.99146 -13.77531 -13.47340 -13.39662 -12.98486 -12.84358 -12.65653 -12.51036 -12.28443 -12.17414 -11.80931 -11.53784 -11.08157 -10.98159 -10.51926 -10.37052 -10.30864 -10.26947 -9.84302 -9.69154 -9.51896 -9.40610 -8.88758 -8.79949 -8.67756 -8.15765 -7.07970 -6.02939 -3.40225 0.33135 1.22199 2.46967 2.68811 2.99479 3.22186 3.32100 3.43054 3.43843 3.88705 4.19997 4.34834 4.44408 4.47949 4.54265 4.66895 4.88365 4.91837 5.03266 5.13097 5.20541 5.29197 5.45469 5.49708 5.57375 5.65610 5.69142 5.78860 5.98445 6.01679 6.20173 6.21379 6.31619 6.35346 6.40721 6.46027 6.59268 6.61723 6.69824 6.84834 7.07150 7.71261 7.78225 7.78656 7.94947 8.25059 8.40263 8.83849 9.62231 9.98065 11.12685 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.018005 B = 0.003609 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.782226 B = 7757.577474 C = 8406.690839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.024 3.976 3 Si 0.882 3.118 4 H -0.289 1.289 5 H -0.302 1.302 6 H -0.270 1.270 7 C -0.263 4.263 8 H 0.089 0.911 9 N -0.600 5.600 10 C 0.147 3.853 11 C -0.145 4.145 12 C 0.166 3.834 13 H 0.087 0.913 14 N -0.703 5.703 15 C 0.565 3.435 16 O -0.539 6.539 17 C -0.137 4.137 18 C 0.100 3.900 19 N -0.471 5.471 20 C 0.136 3.864 21 C 0.017 3.983 22 N -0.578 5.578 23 H 0.421 0.579 24 C 0.064 3.936 25 C -0.189 4.189 26 C -0.021 4.021 27 C 0.076 3.924 28 H 0.074 0.926 29 O -0.570 6.570 30 C 0.098 3.902 31 H 0.264 0.736 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.400 0.600 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.178 0.822 40 H 0.160 0.840 41 H 0.377 0.623 42 H 0.029 0.971 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.854 -1.813 -1.035 23.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.176 4.176 3 Si 0.712 3.288 4 H -0.217 1.217 5 H -0.230 1.230 6 H -0.195 1.195 7 C -0.391 4.391 8 H 0.106 0.894 9 N -0.325 5.325 10 C 0.022 3.978 11 C -0.186 4.186 12 C 0.061 3.939 13 H 0.105 0.895 14 N -0.355 5.355 15 C 0.352 3.648 16 O -0.418 6.418 17 C -0.143 4.143 18 C -0.052 4.052 19 N -0.179 5.179 20 C -0.031 4.031 21 C -0.093 4.093 22 N -0.181 5.181 23 H 0.259 0.741 24 C -0.066 4.066 25 C -0.213 4.213 26 C -0.033 4.033 27 C 0.015 3.985 28 H 0.092 0.908 29 O -0.375 6.375 30 C -0.029 4.029 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.237 0.763 37 H 0.175 0.825 38 H 0.174 0.826 39 H 0.195 0.805 40 H 0.178 0.822 41 H 0.224 0.776 42 H 0.046 0.954 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 24.190 -2.016 -0.833 24.288 hybrid contribution 0.322 1.127 -0.081 1.175 sum 24.512 -0.889 -0.914 24.545 Atomic orbital electron populations 1.69833 1.05728 1.26657 1.52517 1.25307 0.95250 0.97586 0.99407 0.86984 0.80154 0.84681 0.76958 1.21728 1.22960 1.19492 1.18934 0.84765 0.94920 1.40447 0.89389 1.44286 1.08864 1.33270 1.46072 1.20954 0.92261 0.91303 0.93298 1.22410 0.99970 0.97540 0.98632 1.20858 0.87357 0.91664 0.93991 0.89516 1.45925 1.10019 1.24375 1.55165 1.17812 0.81787 0.85282 0.79940 1.90719 1.80276 1.21976 1.48781 1.20460 0.93695 0.97001 1.03135 1.22684 0.98719 0.90486 0.93269 1.67592 1.01050 1.33497 1.15810 1.21924 0.93215 0.90929 0.97028 1.19352 0.87466 0.97245 1.05194 1.41745 1.10812 1.18025 1.47539 0.74129 1.22201 0.98738 0.89285 0.96406 1.20909 0.92813 1.00208 1.07414 1.18175 0.91921 0.95401 0.97819 1.22767 0.93887 0.90814 0.91032 0.90786 1.86449 1.39891 1.47392 1.63773 1.22018 0.97704 0.92876 0.90261 0.92654 0.91459 0.95729 0.90558 0.91173 0.76330 0.82483 0.82642 0.80489 0.82244 0.77593 0.95374 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.97 55.49 0.78 -26.16 16 2 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 3 Si 0.88 21.43 24.35 -169.99 -4.14 17.29 16 4 H -0.29 -6.66 6.62 56.52 0.37 -6.29 16 5 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.27 -6.41 6.64 56.52 0.38 -6.03 16 7 C -0.26 -7.03 10.04 -15.06 -0.15 -7.18 16 8 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 9 N -0.60 -13.44 2.77 -172.32 -0.48 -13.92 16 10 C 0.15 2.83 6.26 -3.71 -0.02 2.81 16 11 C -0.15 -2.45 5.77 -26.61 -0.15 -2.60 16 12 C 0.17 2.79 2.47 -67.88 -0.17 2.62 16 13 H 0.09 1.51 7.58 -51.93 -0.39 1.12 16 14 N -0.70 -11.39 4.11 -54.85 -0.23 -11.61 16 15 C 0.57 9.36 7.73 -12.54 -0.10 9.27 16 16 O -0.54 -9.95 14.89 5.27 0.08 -9.87 16 17 C -0.14 -2.04 5.91 -104.63 -0.62 -2.66 16 18 C 0.10 1.41 10.71 -17.14 -0.18 1.23 16 19 N -0.47 -6.30 10.30 -12.85 -0.13 -6.43 16 20 C 0.14 1.44 11.21 -17.35 -0.19 1.25 16 21 C 0.02 0.19 7.31 -84.00 -0.61 -0.43 16 22 N -0.58 -4.12 6.13 -10.63 -0.07 -4.19 16 23 H 0.42 1.38 8.96 -40.82 -0.37 1.02 16 24 C 0.06 0.49 11.83 -16.72 -0.20 0.29 16 25 C -0.19 -2.22 10.09 -39.76 -0.40 -2.62 16 26 C -0.02 -0.29 6.04 -106.58 -0.64 -0.93 16 27 C 0.08 1.31 3.36 -26.62 -0.09 1.22 16 28 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 29 O -0.57 -9.00 13.21 -35.23 -0.47 -9.46 16 30 C 0.10 1.98 3.53 -3.71 -0.01 1.97 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.07 1.30 7.93 -51.93 -0.41 0.88 16 33 H 0.02 0.47 7.74 -51.93 -0.40 0.07 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.40 6.32 4.94 -40.82 -0.20 6.12 16 37 H 0.16 2.07 6.42 -52.48 -0.34 1.74 16 38 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.18 0.63 8.06 -52.49 -0.42 0.21 16 40 H 0.16 2.01 7.19 -52.48 -0.38 1.64 16 41 H 0.38 4.66 9.08 45.56 0.41 5.07 16 42 H 0.03 0.57 5.57 -51.93 -0.29 0.28 16 43 H 0.08 1.72 4.49 -51.93 -0.23 1.49 16 LS Contribution 344.40 15.07 5.19 5.19 Total: -1.00 -34.52 344.40 -7.42 -41.94 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -4.32 Total: 12.44 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -3.64 Total: 4.78 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: -0.13 Total: -62.31 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.39 Total: -19.34 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.14 Total: 17.29 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.52 -7.42 -41.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090394146.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.118 kcal (2) G-P(sol) polarization free energy of solvation -34.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds