Wall clock time and date at job start Tue Mar 31 2020 04:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00068 * 2 1 4 4 H 1.48501 * 109.46686 * 90.00075 * 3 2 1 5 5 H 1.48499 * 109.47518 * 210.00078 * 3 2 1 6 6 H 1.48502 * 109.46873 * 330.00238 * 3 2 1 7 7 C 1.38811 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00157 * 162.76785 * 7 2 1 9 9 N 1.36943 * 119.99955 * 342.76805 * 7 2 1 10 10 C 1.46923 * 120.62930 * 332.17173 * 9 7 2 11 11 C 1.52755 * 109.00900 * 233.58508 * 10 9 7 12 12 C 1.53044 * 109.38132 * 305.58408 * 11 10 9 13 13 H 1.08998 * 109.46165 * 301.22234 * 12 11 10 14 14 N 1.46504 * 109.45065 * 181.25215 * 12 11 10 15 15 C 1.34770 * 119.99766 * 84.94197 * 14 12 11 16 16 O 1.21610 * 120.00436 * 359.97438 * 15 14 12 17 17 C 1.47387 * 120.00201 * 180.02562 * 15 14 12 18 18 C 1.39249 * 120.83032 * 359.71708 * 17 15 14 19 19 N 1.31913 * 120.96741 * 179.76896 * 18 17 15 20 20 C 1.31922 * 122.71565 * 0.48507 * 19 18 17 21 21 C 1.38694 * 120.79921 * 359.78838 * 20 19 18 22 22 N 1.37749 * 134.31077 * 179.97438 * 21 20 19 23 23 H 0.96993 * 125.55810 * 359.97438 * 22 21 20 24 24 C 1.36563 * 108.87862 * 180.02562 * 22 21 20 25 25 C 1.34641 * 109.66188 * 359.97438 * 24 22 21 26 26 C 1.40987 * 118.83237 * 359.97438 * 21 20 19 27 27 C 1.53046 * 109.53404 * 61.24392 * 12 11 10 28 28 H 1.08999 * 109.49861 * 58.58399 * 27 12 11 29 29 O 1.42898 * 109.49343 * 178.68351 * 27 12 11 30 30 C 1.46927 * 120.63120 * 152.45061 * 9 7 2 31 31 H 0.96995 * 120.00322 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.58782 * 353.41781 * 10 9 7 33 33 H 1.09006 * 109.58879 * 113.84066 * 10 9 7 34 34 H 1.09007 * 109.56573 * 185.55521 * 11 10 9 35 35 H 1.09002 * 109.36461 * 65.49364 * 11 10 9 36 36 H 0.97004 * 120.00075 * 264.94533 * 14 12 11 37 37 H 1.08005 * 119.51876 * 0.02562 * 18 17 15 38 38 H 1.08003 * 119.60026 * 179.76371 * 20 19 18 39 39 H 1.08000 * 125.16927 * 179.97438 * 24 22 21 40 40 H 1.07999 * 126.08739 * 180.02562 * 25 24 22 41 41 H 0.96702 * 113.99942 * 179.83960 * 29 27 12 42 42 H 1.09004 * 109.58525 * 246.16048 * 30 9 7 43 43 H 1.08995 * 109.58430 * 6.43945 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0463 1.4001 5 1 3.5477 1.4403 -0.7000 6 1 1.4475 2.6527 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0539 -1.2230 -0.2776 9 7 1.3717 -2.3616 0.3503 10 6 0.2275 -2.3368 1.2716 11 6 0.4938 -3.3061 2.4218 12 6 0.8147 -4.6910 1.8549 13 1 -0.0220 -5.0381 1.2488 14 7 1.0410 -5.6289 2.9574 15 6 -0.0041 -6.2500 3.5390 16 8 -1.1351 -6.0315 3.1490 17 6 0.2234 -7.1932 4.6484 18 6 1.5113 -7.4599 5.1057 19 7 1.7177 -8.3001 6.1014 20 6 0.7369 -8.9377 6.7113 21 6 -0.5819 -8.7455 6.3273 22 7 -1.7913 -9.2485 6.7538 23 1 -1.9142 -9.8888 7.4719 24 6 -2.7888 -8.6995 5.9998 25 6 -2.2600 -7.8533 5.0958 26 6 -0.8595 -7.8540 5.2710 27 6 2.0734 -4.6099 0.9881 28 1 2.9048 -4.2393 1.5876 29 8 2.3898 -5.9091 0.4841 30 6 1.8216 -3.6548 -0.1828 31 1 -0.4850 0.8400 0.0004 32 1 0.0986 -1.3293 1.6671 33 1 -0.6750 -2.6418 0.7418 34 1 -0.3892 -3.3692 3.0579 35 1 1.3401 -2.9478 3.0078 36 1 1.9431 -5.8029 3.2688 37 1 2.3534 -6.9685 4.6409 38 1 0.9637 -9.6178 7.5190 39 1 -3.8418 -8.9118 6.1116 40 1 -2.8096 -7.2766 4.3667 41 1 3.1770 -5.9323 -0.0771 42 1 1.0518 -4.0695 -0.8336 43 1 2.7427 -3.5162 -0.7487 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090394147.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:31 Heat of formation + Delta-G solvation = 14.797526 kcal Electronic energy + Delta-G solvation = -28012.848987 eV Core-core repulsion = 24059.378541 eV Total energy + Delta-G solvation = -3953.470446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.99412 -39.69822 -38.29368 -37.68540 -35.38789 -34.30243 -32.83253 -31.92515 -30.46850 -30.13587 -29.47742 -28.41648 -25.45582 -24.34982 -22.81105 -22.42314 -21.98428 -21.10993 -20.47563 -19.58516 -18.54768 -17.45647 -17.01278 -16.84446 -16.53546 -15.89191 -15.30029 -15.16665 -14.94802 -14.84000 -14.33228 -14.14745 -13.88440 -13.53000 -13.41868 -13.16984 -12.92809 -12.72644 -12.64113 -12.25564 -12.18620 -12.03207 -11.54340 -11.09591 -10.87409 -10.66117 -10.35347 -10.31967 -10.29210 -10.21204 -9.92484 -9.71989 -9.60608 -9.30686 -8.89696 -8.74146 -8.44708 -8.15020 -6.76101 -5.83442 -3.27609 0.32370 1.20144 2.48230 2.68803 3.01730 3.33486 3.37355 3.42770 3.44122 3.88765 4.17131 4.39034 4.46827 4.52534 4.56461 4.66080 4.90787 5.02863 5.15865 5.31448 5.33909 5.45407 5.50121 5.58322 5.65879 5.79743 5.98992 6.00095 6.14198 6.20177 6.34083 6.41111 6.50517 6.56231 6.62275 6.70000 6.79712 6.90163 7.07368 7.31489 7.62470 7.72462 7.74479 7.77632 7.94868 8.39058 8.46673 9.14620 9.77069 10.32831 11.25155 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.021479 B = 0.002719 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.267930 B =10294.731705 C =10725.848075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.279 1.279 6 H -0.291 1.291 7 C -0.259 4.259 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.147 4.147 12 C 0.164 3.836 13 H 0.089 0.911 14 N -0.710 5.710 15 C 0.561 3.439 16 O -0.532 6.532 17 C -0.134 4.134 18 C 0.096 3.904 19 N -0.473 5.473 20 C 0.133 3.867 21 C 0.018 3.982 22 N -0.579 5.579 23 H 0.421 0.579 24 C 0.064 3.936 25 C -0.188 4.188 26 C -0.022 4.022 27 C 0.079 3.921 28 H 0.057 0.943 29 O -0.571 6.571 30 C 0.121 3.879 31 H 0.255 0.745 32 H 0.093 0.907 33 H 0.024 0.976 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.395 0.605 37 H 0.159 0.841 38 H 0.156 0.844 39 H 0.179 0.821 40 H 0.161 0.839 41 H 0.374 0.626 42 H 0.029 0.971 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.675 -19.264 13.830 23.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.204 1.204 6 H -0.217 1.217 7 C -0.389 4.389 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.187 4.187 12 C 0.060 3.940 13 H 0.107 0.893 14 N -0.360 5.360 15 C 0.347 3.653 16 O -0.410 6.410 17 C -0.140 4.140 18 C -0.056 4.056 19 N -0.182 5.182 20 C -0.033 4.033 21 C -0.092 4.092 22 N -0.182 5.182 23 H 0.259 0.741 24 C -0.066 4.066 25 C -0.212 4.212 26 C -0.034 4.034 27 C 0.018 3.982 28 H 0.075 0.925 29 O -0.375 6.375 30 C -0.006 4.006 31 H 0.066 0.934 32 H 0.111 0.889 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.229 0.771 37 H 0.176 0.824 38 H 0.173 0.827 39 H 0.196 0.804 40 H 0.179 0.821 41 H 0.220 0.780 42 H 0.047 0.953 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.278 -19.279 14.156 23.952 hybrid contribution 0.416 0.806 -0.100 0.913 sum -0.861 -18.472 14.056 23.228 Atomic orbital electron populations 1.70035 1.05284 1.25727 1.53186 1.25065 0.95298 0.98516 1.00534 0.86265 0.79071 0.83519 0.77735 1.21349 1.20410 1.21703 1.19170 0.92671 0.84640 1.42371 0.91509 1.44034 1.35816 1.01032 1.50339 1.20741 0.88723 0.98394 0.87639 1.22541 1.01119 0.94229 1.00806 1.21027 0.97598 0.89212 0.86134 0.89278 1.46012 1.08994 1.44779 1.36195 1.17846 0.85207 0.80195 0.82030 1.90759 1.22374 1.64070 1.63760 1.20524 0.93521 1.00697 0.99254 1.22635 0.94860 0.94949 0.93131 1.67570 1.33847 1.08031 1.08705 1.21886 0.84816 0.97950 0.98668 1.19349 0.88807 1.01101 0.99894 1.41749 1.04259 1.39723 1.32432 0.74134 1.22218 0.93978 0.96870 0.93518 1.20957 0.92411 1.04329 1.03551 1.18197 0.94240 0.96032 0.94961 1.22781 0.95957 0.83157 0.96267 0.92534 1.86490 1.50542 1.30197 1.70258 1.21523 0.98799 0.87377 0.92941 0.93444 0.88884 0.95829 0.91818 0.92326 0.77076 0.82417 0.82696 0.80430 0.82131 0.77989 0.95295 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.87 11.19 55.49 0.62 -25.25 16 2 C 0.01 0.14 4.91 -17.43 -0.09 0.05 16 3 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.26 -6.93 9.58 -15.06 -0.14 -7.07 16 8 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 9 N -0.59 -14.42 3.00 -172.58 -0.52 -14.93 16 10 C 0.17 4.11 5.28 -3.94 -0.02 4.09 16 11 C -0.15 -2.92 5.63 -26.83 -0.15 -3.07 16 12 C 0.16 3.00 2.12 -67.88 -0.14 2.85 16 13 H 0.09 1.87 7.58 -51.93 -0.39 1.48 16 14 N -0.71 -11.10 4.87 -54.85 -0.27 -11.37 16 15 C 0.56 9.43 7.73 -12.54 -0.10 9.33 16 16 O -0.53 -10.59 14.88 5.27 0.08 -10.51 16 17 C -0.13 -1.93 5.91 -104.63 -0.62 -2.55 16 18 C 0.10 1.20 10.71 -17.14 -0.18 1.01 16 19 N -0.47 -5.65 10.30 -12.85 -0.13 -5.79 16 20 C 0.13 1.31 11.21 -17.34 -0.19 1.11 16 21 C 0.02 0.19 7.31 -84.00 -0.61 -0.42 16 22 N -0.58 -4.07 6.13 -10.63 -0.07 -4.14 16 23 H 0.42 1.32 8.96 -40.82 -0.37 0.95 16 24 C 0.06 0.50 11.83 -16.72 -0.20 0.31 16 25 C -0.19 -2.29 10.09 -39.76 -0.40 -2.69 16 26 C -0.02 -0.30 6.04 -106.59 -0.64 -0.95 16 27 C 0.08 1.36 3.14 -26.61 -0.08 1.27 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 O -0.57 -8.59 13.16 -35.23 -0.46 -9.06 16 30 C 0.12 2.47 6.14 -3.71 -0.02 2.44 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.09 2.48 6.04 -51.93 -0.31 2.17 16 33 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.39 5.12 6.68 -40.82 -0.27 4.85 16 37 H 0.16 1.62 6.42 -52.48 -0.34 1.28 16 38 H 0.16 0.95 8.06 -52.48 -0.42 0.52 16 39 H 0.18 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.16 2.16 7.19 -52.49 -0.38 1.79 16 41 H 0.37 4.03 9.08 45.56 0.41 4.44 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 LS Contribution 355.01 15.07 5.35 5.35 Total: -1.00 -34.92 355.01 -8.60 -43.51 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -4.57 Total: 10.14 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -3.60 Total: 5.73 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: -0.36 Total: -61.47 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.39 Total: -19.57 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.92 -8.60 -43.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090394147.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.310 kcal (2) G-P(sol) polarization free energy of solvation -34.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds