Wall clock time and date at job start Tue Mar 31 2020 04:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99964 * 2 1 4 4 H 1.48495 * 109.47294 * 269.99997 * 3 2 1 5 5 H 1.48503 * 109.46943 * 29.99822 * 3 2 1 6 6 H 1.48505 * 109.47230 * 149.99478 * 3 2 1 7 7 C 1.38818 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99987 * 163.08830 * 7 2 1 9 9 N 1.36934 * 119.99741 * 343.09256 * 7 2 1 10 10 C 1.46927 * 120.62980 * 331.80120 * 9 7 2 11 11 C 1.53167 * 108.76700 * 233.63110 * 10 9 7 12 12 C 1.53041 * 109.33176 * 305.35732 * 11 10 9 13 13 H 1.08994 * 109.46112 * 181.38520 * 12 11 10 14 14 N 1.46498 * 109.45802 * 301.36162 * 12 11 10 15 15 C 1.34784 * 119.99577 * 275.02086 * 14 12 11 16 16 O 1.21606 * 120.00295 * 0.02562 * 15 14 12 17 17 C 1.47381 * 119.99484 * 180.02562 * 15 14 12 18 18 C 1.39256 * 120.83929 * 359.97438 * 17 15 14 19 19 N 1.31906 * 120.97005 * 180.02562 * 18 17 15 20 20 C 1.31914 * 122.72201 * 359.97438 * 19 18 17 21 21 C 1.38700 * 120.79159 * 0.02562 * 20 19 18 22 22 N 1.37748 * 134.29984 * 179.97438 * 21 20 19 23 23 H 0.97002 * 125.56213 * 0.04736 * 22 21 20 24 24 C 1.36565 * 108.87884 * 180.02562 * 22 21 20 25 25 C 1.34644 * 109.66006 * 359.97438 * 24 22 21 26 26 C 1.40986 * 118.84343 * 0.02562 * 21 20 19 27 27 C 1.53039 * 109.52187 * 61.36999 * 12 11 10 28 28 H 1.08997 * 109.50156 * 58.63041 * 27 12 11 29 29 O 1.42905 * 109.49702 * 178.68919 * 27 12 11 30 30 C 1.46926 * 120.63272 * 151.82741 * 9 7 2 31 31 H 0.96995 * 119.99927 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.59330 * 353.42255 * 10 9 7 33 33 H 1.09010 * 109.58653 * 113.84991 * 10 9 7 34 34 H 1.09003 * 109.48017 * 185.40690 * 11 10 9 35 35 H 1.08997 * 109.49994 * 65.32700 * 11 10 9 36 36 H 0.96992 * 120.00384 * 95.02983 * 14 12 11 37 37 H 1.07998 * 119.51158 * 0.02562 * 18 17 15 38 38 H 1.07998 * 119.60515 * 179.97438 * 20 19 18 39 39 H 1.07998 * 125.16947 * 180.02562 * 24 22 21 40 40 H 1.07995 * 126.08821 * 180.26141 * 25 24 22 41 41 H 0.96690 * 114.00067 * 180.02562 * 29 27 12 42 42 H 1.09005 * 109.58427 * 6.58274 * 30 9 7 43 43 H 1.08997 * 109.70481 * 246.22903 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7002 7 6 2.0104 -1.2022 0.0005 8 1 3.0553 -1.2225 -0.2715 9 7 1.3701 -2.3623 0.3460 10 6 0.2265 -2.3401 1.2681 11 6 0.4987 -3.3188 2.4144 12 6 0.8133 -4.7007 1.8367 13 1 0.9832 -5.4047 2.6513 14 7 -0.3161 -5.1584 1.0236 15 6 -1.3583 -5.7819 1.6081 16 8 -1.3614 -5.9641 2.8105 17 6 -2.4942 -6.2429 0.7900 18 6 -2.5091 -6.0429 -0.5881 19 7 -3.5246 -6.4539 -1.3227 20 6 -4.5723 -7.0700 -0.8100 21 6 -4.6542 -7.3174 0.5523 22 7 -5.5880 -7.9198 1.3663 23 1 -6.4271 -8.3072 1.0716 24 6 -5.1396 -7.8831 2.6557 25 6 -3.9398 -7.2737 2.7008 26 6 -3.5963 -6.8980 1.3845 27 6 2.0683 -4.6169 0.9650 28 1 2.9035 -4.2534 1.5636 29 8 2.3791 -5.9134 0.4506 30 6 1.8140 -3.6529 -0.1980 31 1 -0.4850 0.8400 -0.0004 32 1 0.0993 -1.3344 1.6686 33 1 -0.6768 -2.6411 0.7373 34 1 -0.3817 -3.3837 3.0538 35 1 1.3484 -2.9669 2.9993 36 1 -0.3138 -5.0129 0.0647 37 1 -1.6769 -5.5439 -1.0622 38 1 -5.3763 -7.3848 -1.4587 39 1 -5.6668 -8.2828 3.5093 40 1 -3.3447 -7.1055 3.5862 41 1 3.1653 -5.9353 -0.1119 42 1 2.7346 -3.5133 -0.7649 43 1 1.0421 -4.0621 -0.8498 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090394148.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:34 Heat of formation + Delta-G solvation = 17.451764 kcal Electronic energy + Delta-G solvation = -28610.979228 eV Core-core repulsion = 24657.623878 eV Total energy + Delta-G solvation = -3953.355350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.87086 -39.75088 -38.21064 -37.58094 -35.40765 -34.02242 -32.71072 -31.72854 -30.46136 -30.02253 -29.42738 -28.43348 -25.42718 -24.47947 -22.68208 -22.33223 -21.95123 -21.28274 -20.70398 -18.73614 -18.57315 -17.35184 -17.06137 -16.75741 -16.48278 -15.44347 -15.23221 -15.07538 -14.88326 -14.79364 -14.40272 -14.18733 -13.88051 -13.61168 -13.30623 -13.23394 -12.81014 -12.62392 -12.52876 -12.25233 -12.06153 -11.95118 -11.62914 -11.16613 -10.86362 -10.65168 -10.37710 -10.22998 -10.16981 -10.14309 -9.93331 -9.77959 -9.40276 -9.26949 -8.76804 -8.60483 -8.49676 -8.02768 -6.75069 -5.84974 -3.29563 0.46466 1.34762 2.58506 2.79759 3.14872 3.34465 3.42117 3.43778 3.49801 4.03123 4.32556 4.39416 4.54649 4.60746 4.65874 4.79129 5.03925 5.16454 5.27695 5.30633 5.35596 5.48755 5.58186 5.62090 5.72165 5.78696 5.99456 6.09086 6.11581 6.28048 6.33421 6.46964 6.50028 6.59135 6.67252 6.72062 6.74679 6.97752 7.18172 7.30002 7.61560 7.73372 7.88307 7.92705 7.94757 8.37659 8.58078 9.13147 9.75489 10.31095 11.23074 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.016320 B = 0.003324 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.284928 B = 8421.654710 C = 8907.090658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.007 3.993 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.586 5.586 10 C 0.172 3.828 11 C -0.153 4.153 12 C 0.167 3.833 13 H 0.080 0.920 14 N -0.698 5.698 15 C 0.565 3.435 16 O -0.542 6.542 17 C -0.135 4.135 18 C 0.102 3.898 19 N -0.471 5.471 20 C 0.133 3.867 21 C 0.017 3.983 22 N -0.579 5.579 23 H 0.420 0.580 24 C 0.062 3.938 25 C -0.188 4.188 26 C -0.022 4.022 27 C 0.075 3.925 28 H 0.067 0.933 29 O -0.571 6.571 30 C 0.118 3.882 31 H 0.255 0.745 32 H 0.089 0.911 33 H 0.022 0.978 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.401 0.599 37 H 0.160 0.840 38 H 0.156 0.844 39 H 0.177 0.823 40 H 0.160 0.840 41 H 0.374 0.626 42 H 0.059 0.941 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.760 -16.325 2.081 18.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.193 4.193 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.389 4.389 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.046 3.954 11 C -0.193 4.193 12 C 0.063 3.937 13 H 0.098 0.902 14 N -0.350 5.350 15 C 0.351 3.649 16 O -0.421 6.421 17 C -0.140 4.140 18 C -0.050 4.050 19 N -0.179 5.179 20 C -0.033 4.033 21 C -0.093 4.093 22 N -0.182 5.182 23 H 0.258 0.742 24 C -0.068 4.068 25 C -0.213 4.213 26 C -0.034 4.034 27 C 0.014 3.986 28 H 0.085 0.915 29 O -0.375 6.375 30 C -0.010 4.010 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.040 0.960 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.238 0.762 37 H 0.177 0.823 38 H 0.173 0.827 39 H 0.194 0.806 40 H 0.177 0.823 41 H 0.220 0.780 42 H 0.078 0.922 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -9.390 -16.315 2.352 18.971 hybrid contribution 0.454 0.877 -0.058 0.989 sum -8.937 -15.438 2.294 17.985 Atomic orbital electron populations 1.70031 1.05285 1.25707 1.53122 1.25062 0.95277 0.98487 1.00450 0.86297 0.79173 0.83540 0.77725 1.21351 1.21511 1.20434 1.19133 0.92514 0.84608 1.42662 0.91627 1.44000 1.35996 1.01001 1.50055 1.20791 0.88507 0.98278 0.87809 1.22590 1.01548 0.94781 1.00429 1.20842 0.83565 0.96534 0.92796 0.90184 1.45859 1.19284 1.58053 1.11764 1.17804 0.81978 0.77838 0.87294 1.90707 1.79682 1.57373 1.14341 1.20483 0.95795 1.03173 0.94593 1.22691 0.96402 0.96525 0.89383 1.67580 1.00784 1.10693 1.38831 1.21906 0.96631 0.95832 0.88944 1.19352 0.92388 1.03434 0.94081 1.41730 1.19267 1.50975 1.06237 0.74206 1.22179 0.96440 1.01793 0.86418 1.20909 0.97285 1.05809 0.97256 1.18175 0.92788 0.98157 0.94256 1.22754 0.96164 0.83048 0.96595 0.91514 1.86489 1.50552 1.30456 1.69984 1.21539 0.98522 0.87747 0.93149 0.93497 0.89265 0.96004 0.91783 0.91438 0.76245 0.82335 0.82728 0.80571 0.82291 0.78000 0.92229 0.96044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.46 11.20 55.49 0.62 -24.84 16 2 C 0.01 0.18 4.92 -17.43 -0.09 0.09 16 3 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.26 -6.83 9.58 -15.06 -0.14 -6.97 16 8 H 0.07 1.68 7.88 -52.49 -0.41 1.27 16 9 N -0.59 -13.88 2.99 -172.33 -0.52 -14.40 16 10 C 0.17 4.00 5.05 -3.72 -0.02 3.98 16 11 C -0.15 -3.03 5.77 -26.62 -0.15 -3.18 16 12 C 0.17 3.04 2.47 -67.89 -0.17 2.87 16 13 H 0.08 1.51 7.58 -51.93 -0.39 1.11 16 14 N -0.70 -12.24 4.11 -54.86 -0.23 -12.47 16 15 C 0.56 10.23 7.73 -12.54 -0.10 10.13 16 16 O -0.54 -10.92 14.88 5.27 0.08 -10.84 16 17 C -0.13 -2.19 5.91 -104.63 -0.62 -2.80 16 18 C 0.10 1.54 10.71 -17.14 -0.18 1.36 16 19 N -0.47 -6.73 10.30 -12.85 -0.13 -6.86 16 20 C 0.13 1.55 11.21 -17.35 -0.19 1.35 16 21 C 0.02 0.20 7.31 -83.99 -0.61 -0.41 16 22 N -0.58 -4.70 6.13 -10.63 -0.07 -4.76 16 23 H 0.42 1.76 8.96 -40.82 -0.37 1.39 16 24 C 0.06 0.53 11.84 -16.72 -0.20 0.34 16 25 C -0.19 -2.44 10.09 -39.76 -0.40 -2.84 16 26 C -0.02 -0.32 6.04 -106.59 -0.64 -0.97 16 27 C 0.08 1.28 3.36 -26.61 -0.09 1.19 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 O -0.57 -8.58 13.21 -35.23 -0.47 -9.05 16 30 C 0.12 2.28 5.84 -3.71 -0.02 2.25 16 31 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16 33 H 0.02 0.54 7.74 -51.92 -0.40 0.14 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.40 6.75 4.94 -40.82 -0.20 6.55 16 37 H 0.16 2.24 6.42 -52.49 -0.34 1.90 16 38 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.18 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.16 2.21 7.19 -52.49 -0.38 1.83 16 41 H 0.37 4.02 9.08 45.56 0.41 4.43 16 42 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 43 H 0.02 0.42 6.65 -51.93 -0.35 0.07 16 LS Contribution 350.84 15.07 5.29 5.29 Total: -1.00 -34.01 350.84 -8.48 -42.48 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -4.40 Total: 12.92 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: -3.63 Total: 6.39 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: -0.32 Total: -63.33 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.39 Total: -19.89 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.01 -8.48 -42.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090394148.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.933 kcal (2) G-P(sol) polarization free energy of solvation -34.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds