Wall clock time and date at job start Tue Mar 31 2020 04:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00047 * 2 1 4 4 H 1.48496 * 109.46879 * 274.98771 * 3 2 1 5 5 H 1.48496 * 109.47066 * 34.98793 * 3 2 1 6 6 H 1.48502 * 109.46998 * 154.99195 * 3 2 1 7 7 C 1.38814 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00017 * 185.05853 * 7 2 1 9 9 N 1.36935 * 119.99916 * 5.06415 * 7 2 1 10 10 C 1.47584 * 134.49101 * 173.48137 * 9 7 2 11 11 C 1.53949 * 86.11573 * 155.35483 * 10 9 7 12 12 O 1.42907 * 113.74069 * 137.95208 * 11 10 9 13 13 C 1.42893 * 114.00047 * 151.92402 * 12 11 10 14 14 C 1.53031 * 109.46157 * 149.99906 * 13 12 11 15 15 C 1.53194 * 109.31489 * 181.37305 * 14 13 12 16 16 N 1.46926 * 108.77649 * 305.36306 * 15 14 13 17 17 C 1.34770 * 120.63660 * 233.63003 * 16 15 14 18 18 O 1.21294 * 119.99876 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00517 * 179.97438 * 17 16 15 20 20 H 1.09000 * 115.54686 * 34.33590 * 19 17 16 21 21 C 1.52991 * 117.50168 * 248.62442 * 19 17 16 22 22 C 1.53001 * 60.00237 * 252.50732 * 21 19 17 23 23 F 1.39900 * 117.49747 * 252.51113 * 22 21 19 24 24 F 1.39906 * 117.49818 * 107.48718 * 22 21 19 25 25 C 1.46930 * 118.73430 * 53.61122 * 16 15 14 26 26 C 1.53037 * 109.45018 * 270.06136 * 13 12 11 27 27 C 1.47816 * 134.45997 * 353.34175 * 9 7 2 28 28 H 0.96996 * 120.00100 * 359.97438 * 1 2 3 29 29 H 1.08996 * 113.77201 * 41.05616 * 10 9 7 30 30 H 1.08994 * 113.76799 * 269.65313 * 10 9 7 31 31 H 1.09005 * 113.74143 * 269.15088 * 11 10 9 32 32 H 1.09011 * 109.46266 * 30.02476 * 13 12 11 33 33 H 1.09001 * 109.49869 * 61.42436 * 14 13 12 34 34 H 1.09005 * 109.52846 * 301.33631 * 14 13 12 35 35 H 1.09000 * 109.58665 * 65.15144 * 15 14 13 36 36 H 1.09003 * 109.59055 * 185.57671 * 15 14 13 37 37 H 1.09004 * 117.50236 * 359.97438 * 21 19 17 38 38 H 1.09005 * 117.50148 * 145.02008 * 21 19 17 39 39 H 1.08996 * 109.58423 * 186.60415 * 25 16 15 40 40 H 1.08997 * 109.58591 * 66.17806 * 25 16 15 41 41 H 1.08996 * 109.50224 * 298.57103 * 26 13 12 42 42 H 1.09006 * 109.50113 * 58.67319 * 26 13 12 43 43 H 1.09002 * 113.76312 * 90.38266 * 27 9 7 44 44 H 1.08996 * 113.83409 * 318.92395 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5044 2.6199 0.8028 6 1 3.5965 1.4120 0.5919 7 6 2.0103 -1.2022 -0.0005 8 1 3.0871 -1.2041 0.0819 9 7 1.3296 -2.3857 -0.1057 10 6 1.7286 -3.7983 -0.2583 11 6 0.3710 -4.1420 0.3809 12 8 -0.3006 -5.2356 -0.2477 13 6 -1.1661 -5.9650 0.6245 14 6 -2.3270 -6.5510 -0.1822 15 6 -3.2709 -7.3031 0.7612 16 7 -2.4944 -8.2992 1.5120 17 6 -2.8668 -9.5944 1.5229 18 8 -3.8513 -9.9475 0.9087 19 6 -2.0596 -10.6041 2.2973 20 1 -1.6103 -10.2384 3.2206 21 6 -1.2793 -11.6486 1.4967 22 6 -2.5341 -12.0585 2.2704 23 9 -2.3574 -12.8172 3.4324 24 9 -3.6842 -12.3491 1.5286 25 6 -1.3038 -7.8564 2.2503 26 6 -0.3819 -7.0981 1.2900 27 6 -0.1002 -2.7609 -0.1095 28 1 -0.4850 0.8400 0.0004 29 1 2.5859 -4.0811 0.3525 30 1 1.8195 -4.1195 -1.2959 31 1 0.4076 -4.2332 1.4665 32 1 -1.5578 -5.2956 1.3906 33 1 -1.9378 -7.2395 -0.9323 34 1 -2.8713 -5.7455 -0.6753 35 1 -3.7308 -6.5996 1.4552 36 1 -4.0446 -7.8052 0.1803 37 1 -1.3501 -11.6057 0.4098 38 1 -0.3162 -11.9702 1.8931 39 1 -0.7795 -8.7235 2.6519 40 1 -1.6033 -7.1980 3.0657 41 1 -0.0110 -7.7814 0.5262 42 1 0.4585 -6.6817 1.8455 43 1 -0.5476 -2.7767 -1.1033 44 1 -0.7002 -2.2169 0.6199 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093533341.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:59 Heat of formation + Delta-G solvation = -81.772470 kcal Electronic energy + Delta-G solvation = -28334.191826 eV Core-core repulsion = 23925.844605 eV Total energy + Delta-G solvation = -4408.347222 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.154 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.03341 -47.67247 -40.66341 -38.89966 -37.56791 -36.08466 -35.52959 -32.34889 -31.67892 -31.33216 -27.53618 -26.08521 -24.82359 -24.32050 -23.46598 -23.01490 -22.63445 -21.00900 -19.61936 -19.22645 -18.68291 -17.23734 -17.19881 -16.83658 -16.39504 -16.36805 -15.67071 -15.62819 -15.06170 -14.61999 -14.57540 -14.33592 -14.25685 -14.08352 -13.89229 -13.79392 -13.62785 -13.35574 -12.96427 -12.85210 -12.59906 -12.10812 -11.98381 -11.79698 -11.69337 -11.49259 -11.25991 -11.19440 -10.91403 -10.74683 -10.61116 -10.53059 -10.32638 -10.12676 -10.01881 -9.57775 -9.04337 -8.83448 -8.78829 -6.93044 -5.83253 -3.15347 1.84356 2.30617 2.57708 2.88226 3.36165 3.40931 3.43349 3.68742 3.69301 3.89557 4.11972 4.20813 4.44414 4.47385 4.66432 4.76713 4.86290 5.00966 5.02076 5.02933 5.15684 5.22118 5.24230 5.32094 5.35115 5.45582 5.51449 5.61152 5.64167 5.71270 5.80934 5.96918 6.12324 6.22759 6.36105 6.58241 6.61944 6.95070 7.06052 7.18306 7.48482 7.72248 7.81960 7.92571 8.99023 9.65041 10.54338 11.34604 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.036637 B = 0.002034 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.070258 B =13759.517674 C =14105.742529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.224 4.224 8 H 0.082 0.918 9 N -0.609 5.609 10 C 0.121 3.879 11 C 0.034 3.966 12 O -0.372 6.372 13 C 0.091 3.909 14 C -0.131 4.131 15 C 0.114 3.886 16 N -0.603 5.603 17 C 0.543 3.457 18 O -0.523 6.523 19 C -0.198 4.198 20 H 0.150 0.850 21 C -0.146 4.146 22 C 0.229 3.771 23 F -0.156 7.156 24 F -0.138 7.138 25 C 0.106 3.894 26 C -0.157 4.157 27 C 0.152 3.848 28 H 0.255 0.745 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.036 0.964 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.727 -23.077 6.533 24.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.351 4.351 8 H 0.100 0.900 9 N -0.338 5.338 10 C -0.005 4.005 11 C -0.025 4.025 12 O -0.290 6.290 13 C 0.032 3.968 14 C -0.169 4.169 15 C -0.007 4.007 16 N -0.337 5.337 17 C 0.330 3.670 18 O -0.398 6.398 19 C -0.220 4.220 20 H 0.168 0.832 21 C -0.184 4.184 22 C 0.192 3.808 23 F -0.137 7.137 24 F -0.118 7.118 25 C -0.016 4.016 26 C -0.195 4.195 27 C 0.026 3.974 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.117 0.883 37 H 0.147 0.853 38 H 0.153 0.847 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.054 0.946 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.250 -22.988 6.047 24.147 hybrid contribution 0.458 1.037 0.342 1.184 sum -3.792 -21.951 6.389 23.175 Atomic orbital electron populations 1.69839 1.05105 1.25501 1.56057 1.24854 0.95720 0.97653 1.02157 0.86099 0.78713 0.83376 0.77593 1.21524 1.21651 1.20483 1.18987 0.90730 0.81704 1.43680 0.90029 1.45684 1.02532 1.00704 1.84833 1.22722 0.93855 0.86072 0.97862 1.25059 0.94650 0.86454 0.96321 1.87969 1.59741 1.44574 1.36705 1.21955 0.90203 0.92134 0.92505 1.21984 0.96046 1.00502 0.98369 1.21693 0.94210 0.90126 0.94704 1.48060 1.28321 1.06994 1.50305 1.19197 0.84591 0.82266 0.80971 1.90797 1.26528 1.78880 1.43631 1.23684 1.03351 0.90781 1.04183 0.83202 1.24295 0.95933 0.96363 1.01797 1.19477 0.86870 0.91308 0.83183 1.93057 1.95190 1.77040 1.48383 1.93137 1.49854 1.93931 1.74900 1.21856 0.85493 0.99810 0.94476 1.22478 0.98764 0.98807 0.99477 1.22692 0.88073 0.87928 0.98684 0.93542 0.93681 0.94030 0.90234 0.91945 0.90768 0.89429 0.90796 0.88341 0.85253 0.84714 0.89429 0.90602 0.90589 0.90016 0.94629 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.12 11.51 55.49 0.64 -26.48 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 21.89 29.56 -169.99 -5.02 16.87 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.22 -6.25 10.70 -15.06 -0.16 -6.42 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.77 16 9 N -0.61 -15.68 3.70 -177.96 -0.66 -16.34 16 10 C 0.12 2.49 8.77 -2.96 -0.03 2.46 16 11 C 0.03 0.62 4.29 -25.81 -0.11 0.51 16 12 O -0.37 -6.04 10.01 -35.23 -0.35 -6.39 16 13 C 0.09 1.09 2.45 -26.70 -0.07 1.02 16 14 C -0.13 -1.42 5.73 -26.62 -0.15 -1.57 16 15 C 0.11 1.11 6.43 -3.71 -0.02 1.08 16 16 N -0.60 -5.52 2.97 -172.76 -0.51 -6.03 16 17 C 0.54 5.62 7.48 -10.99 -0.08 5.54 16 18 O -0.52 -7.39 14.56 5.55 0.08 -7.31 16 19 C -0.20 -1.41 4.95 -91.78 -0.45 -1.87 16 20 H 0.15 0.66 6.82 -51.93 -0.35 0.30 16 21 C -0.15 -0.80 10.20 -26.74 -0.27 -1.08 16 22 C 0.23 1.99 5.19 -26.73 -0.14 1.85 16 23 F -0.16 -1.39 17.60 2.25 0.04 -1.35 16 24 F -0.14 -1.66 15.71 2.25 0.04 -1.63 16 25 C 0.11 0.75 6.30 -3.71 -0.02 0.72 16 26 C -0.16 -1.44 5.69 -26.61 -0.15 -1.59 16 27 C 0.15 3.58 7.27 -2.84 -0.02 3.56 16 28 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.36 7.80 -51.93 -0.41 0.95 16 32 H 0.06 0.75 7.74 -51.92 -0.40 0.35 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.10 1.04 7.00 -51.93 -0.36 0.68 16 37 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.13 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.40 5.67 -51.93 -0.29 0.11 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 1.73 7.37 -51.93 -0.38 1.35 16 LS Contribution 366.01 15.07 5.52 5.52 Total: -1.00 -34.08 366.01 -8.42 -42.49 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -6.40 Total: -3.29 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -1.78 Total: 3.94 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.53 Total: -48.85 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.27 Total: -13.70 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.08 Total: -2.97 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.08 -8.42 -42.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093533341.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.279 kcal (2) G-P(sol) polarization free energy of solvation -34.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds