Wall clock time and date at job start Tue Mar 31 2020 04:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00335 * 2 1 4 4 H 1.48497 * 109.47223 * 270.00111 * 3 2 1 5 5 H 1.48501 * 109.47186 * 30.00336 * 3 2 1 6 6 H 1.48497 * 109.47112 * 150.00058 * 3 2 1 7 7 C 1.38812 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00250 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99868 * 359.97438 * 7 2 1 10 10 C 1.47582 * 134.49304 * 179.97438 * 9 7 2 11 11 C 1.53946 * 86.11638 * 155.36386 * 10 9 7 12 12 N 1.46502 * 113.73900 * 137.95241 * 11 10 9 13 13 C 1.46764 * 124.34707 * 121.93077 * 12 11 10 14 14 C 1.54480 * 105.47241 * 197.03818 * 13 12 11 15 15 H 1.09008 * 110.96860 * 216.42712 * 14 13 12 16 16 N 1.46495 * 110.97225 * 92.70335 * 14 13 12 17 17 C 1.34774 * 120.00430 * 154.99963 * 16 14 13 18 18 O 1.21512 * 119.99831 * 359.97438 * 17 16 14 19 19 C 1.48152 * 120.00298 * 179.97438 * 17 16 14 20 20 C 1.39816 * 120.92297 * 359.72230 * 19 17 16 21 21 C 1.38144 * 119.00592 * 179.75307 * 20 19 17 22 22 N 1.31817 * 120.89348 * 0.53118 * 21 20 19 23 23 C 1.31819 * 122.04584 * 359.74152 * 22 21 20 24 24 C 1.38146 * 120.89681 * 359.97241 * 23 22 21 25 25 C 1.54784 * 101.69261 * 334.38904 * 14 13 12 26 26 C 1.34420 * 124.35242 * 301.95377 * 12 11 10 27 27 O 1.21283 * 124.93917 * 359.53285 * 26 12 11 28 28 C 1.47812 * 134.45859 * 359.87639 * 9 7 2 29 29 H 0.97007 * 119.99848 * 359.97438 * 1 2 3 30 30 H 1.09001 * 113.76782 * 41.06868 * 10 9 7 31 31 H 1.08994 * 113.77552 * 269.66818 * 10 9 7 32 32 H 1.08991 * 113.74822 * 269.16167 * 11 10 9 33 33 H 1.09003 * 110.24343 * 316.03631 * 13 12 11 34 34 H 1.09001 * 110.24815 * 78.03591 * 13 12 11 35 35 H 0.97004 * 119.99548 * 334.99955 * 16 14 13 36 36 H 1.08007 * 120.49500 * 359.97438 * 20 19 17 37 37 H 1.07995 * 119.55757 * 180.26854 * 21 20 19 38 38 H 1.08003 * 119.54828 * 180.02562 * 23 22 21 39 39 H 1.08001 * 120.49517 * 180.02562 * 24 23 22 40 40 H 1.08996 * 110.61291 * 266.40068 * 25 14 13 41 41 H 1.09001 * 110.42713 * 143.71017 * 25 14 13 42 42 H 1.09004 * 113.77061 * 90.36669 * 28 9 7 43 43 H 1.09007 * 113.83181 * 318.91229 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 1.7199 -3.8102 -0.0015 11 6 0.3473 -4.0832 0.6397 12 7 -0.3335 -5.2613 0.0967 13 6 -0.7614 -6.4134 0.8988 14 6 -1.0131 -7.5511 -0.1154 15 1 -1.8633 -8.1626 0.1873 16 7 0.1862 -8.3743 -0.2883 17 6 0.0725 -9.6536 -0.6969 18 8 -1.0250 -10.1243 -0.9215 19 6 1.2855 -10.4859 -0.8723 20 6 2.5581 -9.9623 -0.6249 21 6 3.6618 -10.7752 -0.7962 22 7 3.5271 -12.0239 -1.1966 23 6 2.3467 -12.5549 -1.4460 24 6 1.1898 -11.8151 -1.2952 25 6 -1.3364 -6.7567 -1.4040 26 6 -0.6460 -5.4262 -1.2002 27 8 -0.4131 -4.6227 -2.0784 28 6 -0.1059 -2.7571 0.0022 29 1 -0.4850 0.8401 0.0004 30 1 2.5626 -4.0327 0.6531 31 1 1.8311 -4.2347 -0.9992 32 1 0.3603 -4.0646 1.7294 33 1 0.0243 -6.6988 1.5983 34 1 -1.6795 -6.1781 1.4373 35 1 1.0623 -7.9986 -0.1087 36 1 2.6761 -8.9386 -0.3013 37 1 4.6487 -10.3813 -0.6034 38 1 2.2831 -13.5827 -1.7719 39 1 0.2260 -12.2569 -1.5009 40 1 -2.4122 -6.6163 -1.5084 41 1 -0.9307 -7.2672 -2.2775 42 1 -0.5320 -2.8716 -0.9945 43 1 -0.7185 -2.1401 0.6597 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094693628.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:15 Heat of formation + Delta-G solvation = 44.926949 kcal Electronic energy + Delta-G solvation = -27623.189562 eV Core-core repulsion = 23671.025626 eV Total energy + Delta-G solvation = -3952.163936 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.19252 -40.47351 -39.24420 -37.31069 -36.47182 -34.29218 -33.09874 -32.16993 -31.67022 -30.36760 -27.67039 -27.23429 -25.24093 -24.78674 -23.91521 -23.45083 -22.05790 -21.06971 -20.45722 -18.73169 -18.36402 -17.40358 -16.83694 -16.41605 -16.31181 -16.15703 -15.81606 -15.48579 -15.12222 -14.89573 -14.50751 -14.25850 -14.19118 -13.96832 -13.82701 -13.56290 -13.45119 -12.99880 -12.62643 -12.18652 -12.01496 -11.89030 -11.78256 -11.45708 -11.40231 -10.87677 -10.72647 -10.68004 -10.37623 -10.24651 -10.01868 -9.94509 -9.74924 -9.67519 -9.53910 -9.24448 -8.69864 -8.24867 -6.85361 -5.75407 -3.07663 0.24689 0.62257 2.44253 2.54392 2.87990 3.18143 3.40315 3.41003 3.45193 3.46593 3.96584 4.02666 4.17496 4.32391 4.34083 4.47002 4.48363 4.60015 4.66434 4.92489 5.04528 5.19028 5.26803 5.28973 5.32964 5.35628 5.46148 5.49976 5.57197 5.60328 5.63282 5.78951 6.00527 6.12680 6.22266 6.45404 6.51528 6.81683 6.96884 7.25444 7.43568 7.44223 7.55225 7.58651 7.67136 7.97935 8.50217 9.05107 9.71498 10.59856 11.41776 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.019766 B = 0.002559 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.219203 B =10940.058320 C =11900.274851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.222 4.222 8 H 0.080 0.920 9 N -0.604 5.604 10 C 0.112 3.888 11 C 0.098 3.902 12 N -0.610 5.610 13 C 0.095 3.905 14 C 0.133 3.867 15 H 0.120 0.880 16 N -0.712 5.712 17 C 0.562 3.438 18 O -0.526 6.526 19 C -0.088 4.088 20 C -0.140 4.140 21 C 0.098 3.902 22 N -0.470 5.470 23 C 0.095 3.905 24 C -0.115 4.115 25 C -0.167 4.167 26 C 0.511 3.489 27 O -0.508 6.508 28 C 0.153 3.847 29 H 0.254 0.746 30 H 0.042 0.958 31 H 0.039 0.961 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.405 0.595 36 H 0.141 0.859 37 H 0.164 0.836 38 H 0.164 0.836 39 H 0.149 0.851 40 H 0.114 0.886 41 H 0.100 0.900 42 H 0.056 0.944 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.349 -24.988 2.838 25.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.349 4.349 8 H 0.098 0.902 9 N -0.331 5.331 10 C -0.015 4.015 11 C -0.004 4.004 12 N -0.345 5.345 13 C -0.030 4.030 14 C 0.028 3.972 15 H 0.138 0.862 16 N -0.364 5.364 17 C 0.349 3.651 18 O -0.402 6.402 19 C -0.099 4.099 20 C -0.160 4.160 21 C -0.059 4.059 22 N -0.179 5.179 23 C -0.061 4.061 24 C -0.136 4.136 25 C -0.209 4.209 26 C 0.297 3.703 27 O -0.382 6.382 28 C 0.027 3.973 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.124 0.876 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.241 0.759 36 H 0.159 0.841 37 H 0.181 0.819 38 H 0.181 0.819 39 H 0.167 0.833 40 H 0.132 0.868 41 H 0.119 0.881 42 H 0.074 0.926 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.481 -24.933 2.152 25.031 hybrid contribution 0.151 1.669 0.113 1.680 sum 0.632 -23.264 2.265 23.383 Atomic orbital electron populations 1.69827 1.05037 1.25347 1.56349 1.24805 0.95691 0.97576 1.02353 0.86102 0.78552 0.83359 0.77626 1.21575 1.21613 1.20608 1.18975 0.90172 0.81711 1.44075 0.90202 1.45704 1.02430 0.99095 1.85830 1.22911 0.94129 0.87091 0.97414 1.24079 0.94167 0.83839 0.98350 1.48557 1.58838 1.19153 1.07986 1.22357 1.01747 0.85059 0.93824 1.21951 0.88791 0.91398 0.95107 0.86189 1.45905 1.10475 1.11525 1.68487 1.18170 0.88496 0.81534 0.76914 1.90796 1.27185 1.72515 1.49674 1.20358 0.93452 0.95250 1.00872 1.22416 0.92621 1.01582 0.99429 1.22824 0.99162 0.89158 0.94707 1.67593 1.27608 1.13306 1.09409 1.22858 0.87023 1.00415 0.95841 1.22339 1.01338 0.93143 0.96756 1.22869 1.03411 0.95168 0.99450 1.20678 0.78897 0.88064 0.82617 1.90798 1.54091 1.47793 1.45513 1.22790 0.88294 0.87235 0.99003 0.93617 0.94033 0.94389 0.87629 0.89795 0.89373 0.75884 0.84131 0.81871 0.81902 0.83330 0.86816 0.88120 0.92604 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.89 11.39 55.49 0.63 -27.26 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.22 -6.35 10.70 -15.06 -0.16 -6.52 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 9 N -0.60 -15.91 3.70 -177.86 -0.66 -16.57 16 10 C 0.11 2.31 8.44 -2.97 -0.03 2.29 16 11 C 0.10 1.77 4.81 -70.13 -0.34 1.43 16 12 N -0.61 -8.59 3.16 -166.63 -0.53 -9.12 16 13 C 0.09 0.83 6.97 -3.12 -0.02 0.81 16 14 C 0.13 1.13 3.53 -66.22 -0.23 0.90 16 15 H 0.12 0.94 7.54 -51.92 -0.39 0.55 16 16 N -0.71 -5.75 5.09 -52.99 -0.27 -6.02 16 17 C 0.56 5.40 7.80 -12.19 -0.10 5.30 16 18 O -0.53 -6.55 16.09 5.36 0.09 -6.46 16 19 C -0.09 -0.73 5.91 -104.65 -0.62 -1.35 16 20 C -0.14 -0.95 9.62 -39.03 -0.38 -1.32 16 21 C 0.10 0.70 11.17 -17.59 -0.20 0.50 16 22 N -0.47 -4.05 10.34 -13.31 -0.14 -4.19 16 23 C 0.10 0.69 11.17 -17.59 -0.20 0.49 16 24 C -0.12 -0.89 9.68 -39.03 -0.38 -1.26 16 25 C -0.17 -1.86 6.60 -26.66 -0.18 -2.04 16 26 C 0.51 8.15 7.41 -10.86 -0.08 8.07 16 27 O -0.51 -10.96 14.61 5.55 0.08 -10.88 16 28 C 0.15 3.72 6.90 -2.83 -0.02 3.70 16 29 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.84 7.25 -51.93 -0.38 0.46 16 32 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 33 H 0.08 0.59 8.08 -51.93 -0.42 0.18 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.40 2.72 6.81 -40.82 -0.28 2.44 16 36 H 0.14 0.65 6.54 -52.48 -0.34 0.31 16 37 H 0.16 0.77 8.06 -52.49 -0.42 0.34 16 38 H 0.16 0.71 8.06 -52.48 -0.42 0.29 16 39 H 0.15 1.04 7.74 -52.49 -0.41 0.63 16 40 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.10 1.17 8.09 -51.93 -0.42 0.75 16 42 H 0.06 1.51 5.72 -51.93 -0.30 1.22 16 43 H 0.07 1.87 7.17 -51.93 -0.37 1.49 16 LS Contribution 361.22 15.07 5.44 5.44 Total: -1.00 -37.75 361.22 -8.77 -46.52 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -5.39 Total: 0.40 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: -3.01 Total: 10.69 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: -0.96 Total: -63.16 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: 0.17 Total: -17.34 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -37.75 -8.77 -46.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094693628.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.451 kcal (2) G-P(sol) polarization free energy of solvation -37.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds