Wall clock time and date at job start Tue Mar 31 2020 04:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00335 * 2 1 4 4 H 1.48497 * 109.47223 * 270.00111 * 3 2 1 5 5 H 1.48501 * 109.47186 * 30.00336 * 3 2 1 6 6 H 1.48497 * 109.47112 * 150.00058 * 3 2 1 7 7 C 1.38812 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00250 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99868 * 359.97438 * 7 2 1 10 10 C 1.47582 * 134.49304 * 179.97438 * 9 7 2 11 11 C 1.53946 * 86.11638 * 155.36386 * 10 9 7 12 12 N 1.46502 * 113.73900 * 137.95241 * 11 10 9 13 13 C 1.46764 * 124.34707 * 121.93077 * 12 11 10 14 14 C 1.54480 * 105.47241 * 197.03818 * 13 12 11 15 15 H 1.09008 * 110.96860 * 216.42712 * 14 13 12 16 16 N 1.46495 * 110.97225 * 92.70335 * 14 13 12 17 17 C 1.34774 * 120.00430 * 154.99963 * 16 14 13 18 18 O 1.21512 * 119.99831 * 359.97438 * 17 16 14 19 19 C 1.48152 * 120.00298 * 179.97438 * 17 16 14 20 20 C 1.39816 * 120.92297 * 359.72230 * 19 17 16 21 21 C 1.38144 * 119.00592 * 179.75307 * 20 19 17 22 22 N 1.31817 * 120.89348 * 0.53118 * 21 20 19 23 23 C 1.31819 * 122.04584 * 359.74152 * 22 21 20 24 24 C 1.38146 * 120.89681 * 359.97241 * 23 22 21 25 25 C 1.54784 * 101.69261 * 334.38904 * 14 13 12 26 26 C 1.34420 * 124.35242 * 301.95377 * 12 11 10 27 27 O 1.21283 * 124.93917 * 359.53285 * 26 12 11 28 28 C 1.47812 * 134.45859 * 359.87639 * 9 7 2 29 29 H 0.97007 * 119.99848 * 359.97438 * 1 2 3 30 30 H 1.09001 * 113.76782 * 41.06868 * 10 9 7 31 31 H 1.08994 * 113.77552 * 269.66818 * 10 9 7 32 32 H 1.08991 * 113.74822 * 269.16167 * 11 10 9 33 33 H 1.09003 * 110.24343 * 316.03631 * 13 12 11 34 34 H 1.09001 * 110.24815 * 78.03591 * 13 12 11 35 35 H 0.97004 * 119.99548 * 334.99955 * 16 14 13 36 36 H 1.08007 * 120.49500 * 359.97438 * 20 19 17 37 37 H 1.07995 * 119.55757 * 180.26854 * 21 20 19 38 38 H 1.08003 * 119.54828 * 180.02562 * 23 22 21 39 39 H 1.08001 * 120.49517 * 180.02562 * 24 23 22 40 40 H 1.08996 * 110.61291 * 266.40068 * 25 14 13 41 41 H 1.09001 * 110.42713 * 143.71017 * 25 14 13 42 42 H 1.09004 * 113.77061 * 90.36669 * 28 9 7 43 43 H 1.09007 * 113.83181 * 318.91229 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 1.7199 -3.8102 -0.0015 11 6 0.3473 -4.0832 0.6397 12 7 -0.3335 -5.2613 0.0967 13 6 -0.7614 -6.4134 0.8988 14 6 -1.0131 -7.5511 -0.1154 15 1 -1.8633 -8.1626 0.1873 16 7 0.1862 -8.3743 -0.2883 17 6 0.0725 -9.6536 -0.6969 18 8 -1.0250 -10.1243 -0.9215 19 6 1.2855 -10.4859 -0.8723 20 6 2.5581 -9.9623 -0.6249 21 6 3.6618 -10.7752 -0.7962 22 7 3.5271 -12.0239 -1.1966 23 6 2.3467 -12.5549 -1.4460 24 6 1.1898 -11.8151 -1.2952 25 6 -1.3364 -6.7567 -1.4040 26 6 -0.6460 -5.4262 -1.2002 27 8 -0.4131 -4.6227 -2.0784 28 6 -0.1059 -2.7571 0.0022 29 1 -0.4850 0.8401 0.0004 30 1 2.5626 -4.0327 0.6531 31 1 1.8311 -4.2347 -0.9992 32 1 0.3603 -4.0646 1.7294 33 1 0.0243 -6.6988 1.5983 34 1 -1.6795 -6.1781 1.4373 35 1 1.0623 -7.9986 -0.1087 36 1 2.6761 -8.9386 -0.3013 37 1 4.6487 -10.3813 -0.6034 38 1 2.2831 -13.5827 -1.7719 39 1 0.2260 -12.2569 -1.5009 40 1 -2.4122 -6.6163 -1.5084 41 1 -0.9307 -7.2672 -2.2775 42 1 -0.5320 -2.8716 -0.9945 43 1 -0.7185 -2.1401 0.6597 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094693628.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:15 Heat of formation + Delta-G solvation = 16.375264 kcal Electronic energy + Delta-G solvation = -27624.427656 eV Core-core repulsion = 23671.025626 eV Total energy + Delta-G solvation = -3953.402030 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.06040 -41.37016 -40.06989 -38.91193 -37.64250 -35.29007 -34.29150 -33.58856 -32.26297 -31.50937 -29.19336 -28.47003 -26.60394 -25.94854 -25.19046 -24.42284 -22.83646 -22.11535 -21.77426 -19.75437 -19.36584 -18.80255 -18.14311 -17.71536 -17.16641 -16.86113 -16.70643 -16.51054 -16.29861 -16.13358 -15.76796 -15.50995 -15.09801 -14.84439 -14.78913 -14.61157 -14.47823 -14.20394 -14.09637 -13.41797 -13.39346 -13.18256 -12.87650 -12.78233 -12.73226 -12.63973 -12.46936 -12.01109 -11.88896 -11.53269 -11.42059 -11.07199 -10.98883 -10.66229 -10.52292 -10.20991 -10.18431 -9.56690 -8.93921 -7.92934 -5.27225 -0.34626 0.11130 1.42887 1.46336 1.54761 1.60855 1.76014 1.87835 2.00164 2.48251 2.85268 3.25027 3.31610 3.43819 3.47204 3.47710 3.53006 3.79065 3.82394 3.83769 3.96035 4.08401 4.20892 4.26805 4.52835 4.56251 4.62014 4.65951 4.74196 4.78166 4.82748 4.83043 4.86953 4.94154 5.03194 5.21809 5.23232 5.31164 5.48514 5.62365 5.85915 5.89944 6.26606 6.31705 6.88094 6.91937 6.98549 7.25158 7.57660 8.52894 9.24333 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.019766 B = 0.002559 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.219203 B =10940.058320 C =11900.274851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.071 4.071 3 Si 0.983 3.017 4 H -0.292 1.292 5 H -0.291 1.291 6 H -0.261 1.261 7 C -0.235 4.235 8 H 0.087 0.913 9 N -0.636 5.636 10 C 0.115 3.885 11 C 0.138 3.862 12 N -0.606 5.606 13 C 0.095 3.905 14 C 0.146 3.854 15 H 0.139 0.861 16 N -0.703 5.703 17 C 0.566 3.434 18 O -0.558 6.558 19 C -0.104 4.104 20 C -0.135 4.135 21 C 0.090 3.910 22 N -0.493 5.493 23 C 0.092 3.908 24 C -0.122 4.122 25 C -0.156 4.156 26 C 0.501 3.499 27 O -0.575 6.575 28 C 0.146 3.854 29 H 0.248 0.752 30 H 0.072 0.928 31 H 0.023 0.977 32 H 0.138 0.862 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.413 0.587 36 H 0.163 0.837 37 H 0.186 0.814 38 H 0.186 0.814 39 H 0.151 0.849 40 H 0.130 0.870 41 H 0.095 0.905 42 H 0.020 0.980 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.419 -26.795 4.677 27.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.811 3.189 4 H -0.219 1.219 5 H -0.218 1.218 6 H -0.186 1.186 7 C -0.363 4.363 8 H 0.105 0.895 9 N -0.362 5.362 10 C -0.011 4.011 11 C 0.034 3.966 12 N -0.339 5.339 13 C -0.027 4.027 14 C 0.040 3.960 15 H 0.156 0.844 16 N -0.355 5.355 17 C 0.353 3.647 18 O -0.436 6.436 19 C -0.115 4.115 20 C -0.155 4.155 21 C -0.066 4.066 22 N -0.203 5.203 23 C -0.065 4.065 24 C -0.143 4.143 25 C -0.197 4.197 26 C 0.290 3.710 27 O -0.454 6.454 28 C 0.019 3.981 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.041 0.959 32 H 0.156 0.844 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.251 0.749 36 H 0.181 0.819 37 H 0.202 0.798 38 H 0.203 0.797 39 H 0.169 0.831 40 H 0.148 0.852 41 H 0.114 0.886 42 H 0.038 0.962 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.579 -26.813 4.037 27.161 hybrid contribution -0.171 2.147 -0.515 2.215 sum 1.409 -24.665 3.523 24.955 Atomic orbital electron populations 1.70042 1.06668 1.25631 1.58020 1.25726 0.96603 1.01200 1.02819 0.85015 0.77917 0.78728 0.77287 1.21903 1.21765 1.18555 1.19440 0.90874 0.83157 1.42859 0.89529 1.46150 1.03555 1.00709 1.85830 1.23003 0.96742 0.83949 0.97431 1.23361 0.91628 0.82465 0.99122 1.48486 1.57757 1.19420 1.08255 1.22718 1.03948 0.82518 0.93474 1.21924 0.89561 0.91244 0.93244 0.84377 1.45856 1.10863 1.11013 1.67815 1.18326 0.88374 0.81790 0.76188 1.90782 1.28387 1.73219 1.51223 1.20404 0.93600 0.95494 1.01970 1.22622 0.91791 1.02499 0.98579 1.23250 1.00328 0.88853 0.94180 1.67632 1.28284 1.14229 1.10152 1.23218 0.86492 1.01391 0.95364 1.22460 1.01710 0.93250 0.96862 1.22829 1.03671 0.92411 1.00825 1.21534 0.78166 0.88943 0.82398 1.90768 1.56743 1.50310 1.47614 1.22602 0.87374 0.90894 0.97186 0.94305 0.90949 0.95887 0.84432 0.86653 0.86871 0.74879 0.81944 0.79751 0.79714 0.83120 0.85189 0.88615 0.96180 0.94186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.04 11.39 21.65 0.25 -59.79 16 2 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 3 Si 0.98 46.85 29.55 68.60 2.03 48.88 16 4 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 7 C -0.23 -13.60 10.70 84.03 0.90 -12.71 16 8 H 0.09 4.73 7.83 -2.91 -0.02 4.71 16 9 N -0.64 -33.90 3.70 -716.64 -2.65 -36.55 16 10 C 0.11 4.62 8.44 86.49 0.73 5.35 16 11 C 0.14 4.74 4.81 46.75 0.22 4.97 16 12 N -0.61 -15.77 3.16 -799.68 -2.52 -18.29 16 13 C 0.10 1.26 6.97 86.83 0.61 1.87 16 14 C 0.15 1.98 3.53 46.10 0.16 2.14 16 15 H 0.14 1.59 7.54 -2.38 -0.02 1.57 16 16 N -0.70 -9.16 5.09 -439.86 -2.24 -11.40 16 17 C 0.57 9.63 7.80 86.88 0.68 10.30 16 18 O -0.56 -12.93 16.09 -3.75 -0.06 -12.99 16 19 C -0.10 -1.53 5.91 -19.88 -0.12 -1.65 16 20 C -0.13 -1.50 9.62 22.63 0.22 -1.28 16 21 C 0.09 1.10 11.17 84.67 0.95 2.05 16 22 N -0.49 -7.73 10.34 -196.01 -2.03 -9.76 16 23 C 0.09 1.19 11.17 84.67 0.95 2.14 16 24 C -0.12 -1.73 9.68 22.63 0.22 -1.52 16 25 C -0.16 -3.20 6.60 30.64 0.20 -3.00 16 26 C 0.50 15.76 7.41 87.90 0.65 16.42 16 27 O -0.58 -25.93 14.61 -3.04 -0.04 -25.98 16 28 C 0.15 7.33 6.90 86.45 0.60 7.92 16 29 H 0.25 15.10 8.31 -92.70 -0.77 14.33 16 30 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.02 1.02 7.25 -2.39 -0.02 1.00 16 32 H 0.14 3.95 8.14 -2.39 -0.02 3.93 16 33 H 0.12 0.94 8.08 -2.39 -0.02 0.92 16 34 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.41 4.04 6.81 -92.71 -0.63 3.41 16 36 H 0.16 0.96 6.54 -2.91 -0.02 0.94 16 37 H 0.19 1.27 8.06 -2.91 -0.02 1.25 16 38 H 0.19 1.33 8.06 -2.91 -0.02 1.31 16 39 H 0.15 1.99 7.74 -2.91 -0.02 1.97 16 40 H 0.13 2.28 8.14 -2.39 -0.02 2.27 16 41 H 0.10 2.12 8.09 -2.39 -0.02 2.10 16 42 H 0.02 1.17 5.72 -2.38 -0.01 1.15 16 43 H 0.04 2.22 7.17 -2.38 -0.02 2.20 16 Total: -1.00 -87.67 361.22 0.58 -87.09 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 0.43 Total: 9.49 kcal Atomic # 6 Polarization: 21.87 SS G_CDS: 7.43 Total: 29.30 kcal Atomic # 7 Polarization: -126.60 SS G_CDS: -9.20 Total: -135.79 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -0.10 Total: -38.97 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -87.67 0.58 -87.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094693628.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.467 kcal (2) G-P(sol) polarization free energy of solvation -87.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds